ID:

dsi_22533

Coordinate:

3l:7990354-7990562 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7990283_7990353_+]; exon [3l_7990256_7990353_+]; CDS [3l_7990563_7991330_+]; exon [3l_7990563_7991330_+]; intron [3l_7990354_7990562_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACCGATGTGGATGCGGGCGAAGTGTTCGTCAACTTCAACCAGAATATAACGTAAGTTACAGTGCACACTGGCTAAGGGAACGATGATAAAGTTGTGCCAGTAATATTTGTTCTACTTATGCTTATGTTTGTATATAATTGCTATAAATTGCTATTAATTTAGTTTACAAACTATATGAGTCATAGTTTCTGCGAAGCGAATTAAAATTCTTAACACCACCTACTACTTGCTAACCCACTCACACTTTCCACCCTTTCAGTTCCCTGGCCGTGGCCACCAGTGGAGGCTACAGCCTGTACAGCCTGGGCT ************************************************.................(((......((((...(((....((((.((.((((.(((((((.....(((((((((((((((((..((((.((........)).))))........)))))))...))))).))))).....))))).........................)).)))).))))))....)))....)))).......)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M053 female body	M025 embryo	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs
.CCGATGTGGATGCGGGCGAAG...............................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.................CGAAGTGTTCGTCAACTT..................................................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0
.....................GTGTTCGTCAACTTCAACCAGA..........................................................................................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0
............GCGGGCGTTGTGTTCGTC.......................................................................................................................................................................................................................................................................................	18	2	2	0.50	1	1	0	0	0	0	0
.......TGGATGCGGGCGAGGGGTT...........................................................................................................................................................................................................................................................................................	19	2	4	0.25	1	0	1	0	0	0	0
...................................................................................................................................................................................TGATAGTTGCTGCGAAGAGAA.............................................................................................................	21	3	5	0.20	1	0	0	0	1	0	0
.......................................................................................................................................GATTGCTATAAATTGCT.............................................................................................................................................................	17	1	6	0.17	1	1	0	0	0	0	0
.........................................................................AAGGGAACGGTGATAAACTA........................................................................................................................................................................................................................	20	3	7	0.14	1	1	0	0	0	0	0
.......................................................................................................TATTTGGTCTACTGATGGTT..........................................................................................................................................................................................	20	3	15	0.07	1	0	0	0	0	1	0
......................................................................................TAAAGTTGTGCCAGGTA..............................................................................................................................................................................................................	17	2	16	0.06	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................ACTACTCGCTAACCTA........................................................................	16	2	20	0.05	1	0	0	0	0	0	1
...........................................................AGTGCATACTGGCTTA..........................................................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0

Anti-sense strand reads

TGGCTACACCTACGCCCGCTTCACAAGCAGTTGAAGTTGGTCTTATATTGCATTCAATGTCACGTGTGACCGATTCCCTTGCTACTATTTCAACACGGTCATTATAAACAAGATGAATACGAATACAAACATATATTAACGATATTTAACGATAATTAAATCAAATGTTTGATATACTCAGTATCAAAGACGCTTCGCTTAATTTTAAGAATTGTGGTGGATGATGAACGATTGGGTGAGTGTGAAAGGTGGGAAAGTCAAGGGACCGGCACCGGTGGTCACCTCCGATGTCGGACATGTCGGACCCGA ************************************************.................(((......((((...(((....((((.((.((((.(((((((.....(((((((((((((((((..((((.((........)).))))........)))))))...))))).))))).....))))).........................)).)))).))))))....)))....)))).......)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	O001 Testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
......................................................................................................................................................................................................................................ATTGGGTGCGTGTAAAAGGT...........................................................	20	2	5	5.40	27	27	0	0	0	0	0
......................................................................................................................................................................................................................................TTTGGGTGCGTGTGAAAGGT...........................................................	20	2	3	2.00	6	6	0	0	0	0	0
.......................................................................................................................................................................................................................................TTGGGTGCGTGTGAAAGGT...........................................................	19	1	1	1.00	1	1	0	0	0	0	0
................................................................................GCTACTATTTCAACACGGTC.................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0
...........ACGCCTGCTTCACAAGCTGAT.....................................................................................................................................................................................................................................................................................	21	3	1	1.00	1	0	0	1	0	0	0
.........CTACGCCCGCTTCACAAGCAGT......................................................................................................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................AGTGAAAGGTGGGAAA.....................................................	16	1	10	0.40	4	0	0	0	4	0	0
............................................................................................................................................................................................................................................................CAAAGTCAAGGGACC..........................................	15	1	19	0.21	4	0	0	0	2	0	2
.....................................................................................................................................................................................................................................TTTTGGGTGCGTGTGAAAGGT...........................................................	21	3	20	0.20	4	4	0	0	0	0	0
.....................................................................................................................................................................................................................................ATTTGGGTGCGTGTGAAAGGT...........................................................	21	3	6	0.17	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................GGTGTGTGCGAAAGGT...........................................................	16	2	20	0.10	2	0	0	0	0	2	0
................................................................................................................................................................................................................................................AGTGAAAGGTGGGAA......................................................	15	1	20	0.10	2	0	0	0	2	0	0
.....................................................................................................................................................................................................................................AATTGGGTGCGTGTAAAAGGT...........................................................	21	3	10	0.10	1	1	0	0	0	0	0
.................................................GCAGTCAATGTCAGGT....................................................................................................................................................................................................................................................	16	2	20	0.10	2	0	0	0	0	2	0
.............................................................................................................................................................................................................................................................AAAGTCAAGGGACCA.........................................	15	1	16	0.06	1	0	0	0	1	0	0
....................................................................ACCGATTCCCGCGCAACTA..............................................................................................................................................................................................................................	19	3	19	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................GAAAGTGAAAGGTGGGAA......................................................	18	2	20	0.05	1	0	0	0	1	0	0
..........................GGAGTTGTAGTTGGTCT..........................................................................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0

Generated: 04/24/2015 at 10:36 AM