dsi_22508

CDS [3r_12085547_12085675_-]; five_prime_UTR [3r_12085676_12085712_-]; exon [3r_12085547_12085712_-]; intron [3r_12085713_12086869_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AAAATATTATGAGGTCACTTTCTTAATGCGCGTATCAAATTTATGACATGTGTTTTGCTTATTAAAAGTAAACGAAATGCAGAGCTCCAAGTCTTGAAGTTTTTAATGAGATCTGCTCTTTTAAGAAGGCGACTGATTAGCTTCAGTTTTTTATGGATCTTTCTACTAATAAGATCCCTTGTATTTATCTTATCGCACAGCTGAAATCGCTCTGAACAAACAACACCACTCATCACGATGCCCAATCCAC ************************************************...(((((((.....)))))))..((((((((.(((...))).(((((((...((((.((.((.((.((((...)))))))))).)))))))))))........(((((((.........))))))).))))))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
...................................................................................................................................................................................................................CTGAACAAACAACACCACT....................	19	0	1	2.00	2	0	2	0	0	0	0	0	0
...................................................................GTAAACGAAATGCAGAGCTCC..................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CTGAACAAACAACACCACTCATCACG.............	26	0	1	1.00	1	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................ATCGCTCTGAACAAACAACACCACTCATC................	29	0	1	1.00	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CGCTCTGAACAAACAACACC.......................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CTGAACAAACAACACCACTC...................	20	0	1	1.00	1	0	0	1	0	0	0	0	0
......................................................................................................................................................................TAATAGGATGCCTTGTATTTATT.............................................................	23	3	2	0.50	1	0	0	0	1	0	0	0	0
...........................................................................AATCGAGAGCTCCAAGT..............................................................................................................................................................	17	2	20	0.20	4	0	0	0	3	1	0	0	0
..........................................................................AAATCGAGAGCTCCAAGT..............................................................................................................................................................	18	2	5	0.20	1	0	0	0	1	0	0	0	0
......................................................................................................TTAATGAGATCTGAT.....................................................................................................................................	15	1	15	0.13	2	0	0	0	1	1	0	0	0
......................................................................................................TGAATGAGATCCGGTCTTTT................................................................................................................................	20	3	10	0.10	1	0	0	0	0	0	1	0	0
.....................................................................................................................................................................CTTATAAGATCCCTT......................................................................	15	1	12	0.08	1	0	0	0	0	0	0	1	0
........................................................................CGGAATCGAGAGCTCCAAGT..............................................................................................................................................................	20	3	14	0.07	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................CTAGTAAGATCCCTTA.....................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1

TTTTATAATACTCCAGTGAAAGAATTACGCGCATAGTTTAAATACTGTACACAAAACGAATAATTTTCATTTGCTTTACGTCTCGAGGTTCAGAACTTCAAAAATTACTCTAGACGAGAAAATTCTTCCGCTGACTAATCGAAGTCAAAAAATACCTAGAAAGATGATTATTCTAGGGAACATAAATAGAATAGCGTGTCGACTTTAGCGAGACTTGTTTGTTGTGGTGAGTAGTGCTACGGGTTAGGTG ************************************************...(((((((.....)))))))..((((((((.(((...))).(((((((...((((.((.((.((.((((...)))))))))).)))))))))))........(((((((.........))))))).))))))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	O001 Testis	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
............................................................................................................................................................................................................................GTTGTGGTGAGTAGTGCTAC..........	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0
................................ATAGTTTAAATACTGTAAA.......................................................................................................................................................................................................	19	1	1	1.00	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TGTTTGTTGTGCTGAG...................	16	1	9	0.22	2	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................ATAAATGGAATAGCGTGTA..................................................	19	2	5	0.20	1	0	0	0	1	0	0	0	0	0
...................................................................................................................................................AAAAATACCTGCAAAGATGAC..................................................................................	21	3	6	0.17	1	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................AAATGGAATAGCGTG....................................................	15	1	12	0.08	1	0	0	0	0	0	0	1	0	0
.............................................................................................................................................................................................................TAGCGAGTCTTGTTT..............................	15	1	19	0.05	1	0	0	0	0	0	1	0	0	0
...................................................................................................................................................AAAAAAACCTAGAAAG.......................................................................................	16	1	20	0.05	1	0	0	0	0	0	0	0	1	0
.........ACTTCAGTGTAAGAATT................................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	0	1
....................................................................................GAGATTCAGAACTTCG......................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:12085663-12085912 -	dsi_22508	AAAATATTATGAG--GTCACTTTCTTAAT----------GCGCGTAT----CAAA---------TTTATGACATGTGTTTTGCTTA--------------------------TTAAAAGTAAACGAAATG---------------C-----------AG--------------------------A------------------------GCTCCAAGTCTTGAAGTTTTTAATGAGAT--CTGCTCTTTTAAGAAG-GC-GACT---GATTAGCTTCAGTT-TTTTATGG-ATCTTTCTACTA-ATAAGA-TCCCTTGTATTTATCTTATCG-CACAGCTGAAATCGCTCTGAACAAACAACAC--------CACTCA-TCACGATGCCCAATCCAC
droSec2	scaffold_0:12917013-12917265 -		AAAATATTATGAG--GTCACTTTGTTAAT----------GCGCGTAT----CAAA---------TTAATGACATGTGTTTTGCTTA--------------------------TTAAAAGTAAACGAAATG---------------C-----------AG--------------------------A------------------------GCTCCAAGTCTTGAAGTTTTTAATGAGAT--CTGCTCTATTAAGAAG-GC-GACTGATGATCAGCTTCAGTT-TCTTATGG-ATCTTTCCACTA-ACAAGA-TCCCTTGTATTTATCTTATCG-CACAGCTGAAATCGCTCTGAACAAACAACAC--------CACTCA-TCACGATGCCCAATCCAC
dm3	chr3R:9087105-9087376 +		AAAATATTATGAG--GTCACTTTTTTAAG----------GCGCATAT----CAAA---------TTAATGACATGTGTTTTGCTTA--------------------------TTAAAAATATACGAAATG---------------C-----------AGAAATTAG-------------------TTTTATGCTCGA---------GCAAGCTCCAAGTCTTGAAGTTTTTAATGAGAT--ATGCTCTATTAAGAAG-AC-GACT---GATAAGCTTCAGTT-TTTTATGG-ATCTTTCCACTA-ATAAGA-TCCCTTGTATTTATCTTATCG-CACAGCTGAAATCGCTCTGAACAAACAACAC--------CACTCA-TCACGATGCCAAATCCAC
droEre2	scaffold_4770:12562277-12562535 -		AAATTTTTATGAA--GTCACACT-TTAGA----------GCACGTAT----CAAG---------TAAATGACAAGTGTTTTGGTTA--------------------------ATAAAATGAAGCGAAGAT---------------C-----------AAAAGTTAG-------------------TTTTATGATCGA---------CCGAGTTCCAAGACT------------TGAGAT--CTGCTCTATTTAGCAG-GC-AACT---GATAAGCTTAATTT-TTTTTC--TGAACACCCACTAAATAAGA-TCCCTTGTGTTTATCTTATCG-CACAGCTGAAATCGCTCTACACAAACAACAC--------CACTCA-TCACGATGCCCAATCCAC
droYak3	3R:13391092-13391293 +		AAATCATTATAAA--ATCACATT-TTAGA----------GCGCGTAT----AAAA---------T-----------------------------------------------------------------------------------------------------------------------------------------------------AAAGACTTGAAGTTTTTCATAAGAT--CTGCTCTATTTAGAAG-AC-AACT---GATAATCTTTGTTT-TTTTTC--TGACCACCCACTAAATAAGA-GCCCTTGTATTTATCTTATCG-CACAGCTGAAATCGCGCTGAACAAACAACAC--------CACTCA-TCACGATGCCCAATCCAC
droEug1	scf7180000409802:923154-923424 -		GAAAACCTATCAT--ATTACTTT---------------------------------------AATTAAGAACATGTGGTTTTCTTAT-------------------------GTAAATATGTACGTGTTA---------------TGTATGATATACAATAA--------GACTTTT----TTAGTTGGGTG--------GTCTGACT------GAAGTCTTAAA-CTTTTAATTGGAT--CTGCTTTATTAAGACG-GT-GCCT---GATAAGAGTTGTATT-TTTATTTTCCCCACCCACTATATAAGA-TTCGTTGTATTTATCTTATCG-CACAGCTTGAATCTTACTGAACAATCCAAAC--------CACTCA-TCACGATGGCTAATCCAC
droBia1	scf7180000299102:862002-862260 -		GAGAGGCTATAAGCTGTTA--TTTTTAAA----------GAGCGTAG----TATATTACG----TATCCGACATGTGTTTCG--TA--------------------------GTACAAATATACGCATCT--GAT----------C-----------AAAAAGTGG-------------------T------------------------TCTTCCAGTCTTAAA-CTTTTAATGGGAT--ACGCTCCATTTAGACG-GC-GCCT---GATAAGCCTCGTTTT-GT-----AGCCCACCCACTAAATAAGA-TCCCTTGTATTTATCTTATCG-CACAGCTGGAATAACTCAGAGCAAACAACAC--------AACTCA-TCACGATGCCCAATCCAC
droTak1	scf7180000415377:240525-240793 +		TT------ATATT--GTTACTT--TTAGG---GAG-CGTACGCGTAT----TATATTACTT-AATTTGCCACATGTGTTTTAAC----------------------------GATAAAATCAGCGTAATT---------------CTTAAAAAAA-------AT-GTTATAATT----------------------------TTTT------TTTATATCTTGAA-ATTTTAATGAGAT--CCGCTTCATTTATACG-GC-GCTT---GATAAGCTTCGTTTC-TT-----AGCCCACCCACTAAATAAGA-ACCCTTGTATTTATCTTATCG-CACAGCTGAAATAGCTCTGAACAAACAACAC--------CACTCA-TCGCGATGCCCAATCCAC
droEle1	scf7180000486474:413353-413614 +		AAAATTC---------ATAT-----TAGCAGATGG-CAACAAAATAT----CCTGTTAGTTTAATTAATAACAAGCGTTTTTGA----------------------------TAAGAAATCAACGCAATC-TGTTAAACTTCGTAC-----------AGA----------------------------------------------AA------GAAGTCTAAAAAATTTTAATGGGAT--CTGCTCCATTTAGACA-GC-CCAC---GATAAGCTCCATTTC-G------AGGCCATACACTAAACAAGA-TCCCTTGTATTTATCTTATCG-CACAGCCGGAATCGCTCTGAACAAACCACAC--------CACTCA-TCACGATGCCCAATCCAC
droRho1	scf7180000773780:7520-7798 +		AAAAAAT---------ATTT-----TAGTGGATAGATAACAAAAAA-CAATTCT-TTACTTAAATTAATAACATGTGTTTTTCAT---------------------------TAAGAAATCAACGGAATC---------------C-----------ATCAAGT-G---------TTTTCCCTGTACG--------ACTGTTCTTTCC------GAAGTCGACAA-ATTTTAATGGCAT--CTGCTCTATTTAGGCA-GC-GCCT---GATAAGCTTCGTTTT-G------TGGGCACCTACTAAACAAGA-TCCCTTGTATTTATCTTATCG-CACAGCTGGAATCACTCTGAACAAACAACAC--------CACTCA-TCACGATGCCCAATCCTC
droFic1	scf7180000453800:1556837-1557024 +		AAAAG----------GTTCCTTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------TCA--------AGTGTTATTTCC------GAAGTCTTAAG-TTTTTAATGGGAT--GTGCTCCACTTGGAGG-GC-GACT---GATAAGATTCATGTT-T------TGCACATCCACTAAACAAGA-TCCATTGTATTTATCTTATCG-TACAGCTCAAATCGCTCTGAACAAACAACAC--------CACTCA-TCACGATGCCGAATCCAC
droKik1	scf7180000302392:756636-756909 -		GATATATT-------TATACT-----------TAG-AAACAAAAAATCATTGCT-T-------------------------TATAATACAAGTTTATGGCGAAGAATGTTGATGGGAAATCGTATTAAT----------------C-----------ATCAA--------AGCTATT----TTCCCTGGGTG----A------CTTGT------GAAGTCTTGAA-ATTTTAATGGGATCTCTGTTCCGTTTTGACG-ACTGCCT---GATAAGCGTCGTGTT-TA-----TACCCAGCCCCTAA--CAGA-TCCCTTACATTTATCTTATCG-CGCAGCTGGAATCGTTCTGAACAAACAACAC--------CACTCA-TCACGATGCCCAATCCAC
droAna3	scaffold_13340:1638992-1639139 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAATAGGAT--TCGCTTTATTTGGACGTGC-GGCT---GATAAGCTTTTATG-ATTT-TG-TTCCCACCCACTAAA-AAGA-TTCCTTTCAT-TATCTTATCG-C-CAGCTTGAATCATTCTGAACAAACAACAC--------CACACA-TCACGATGCCCAATCCAC
droBip1	scf7180000396712:2687088-2687236 -		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACAGACT--TCGCTTTATATAGAAGGGC-GGCT---GATAAGCTTTTATG-ATTTTTGTTTCCCACCCACTAAA-AAGA-TTCCTTTCAC-TATCTTATCG-C-CAGCTTGAATCATTCTGAACAAACAACCC--------CACACA-TCACGATGCCCAATCCAC
dp5	2:11000974-11001089 -		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---GATAAGATTCGCAAT-TTG----TTCAGACCCTCTAAAAGACA-TCTCTTTCATTTATCTTATCT-TGCAGCTCGAATTACGTCGAACAAGAAACTC--------TACACA-TCAAGATGGTCAATCCAC
droPer2	scaffold_0:9466019-9466205 +		GTATTA----------------------------------------------------------------------------CTTC--------------------------ATGAAATTAACTAAGATGC-AAT----------C-----------AG--------------------------A------------------------AGT-CAAGAGTTTTA-ATTTTAATGGGTT--G------------GGG-CG-ATCT---GATAAGATTCGCAAT-TTG----TTCAGACCCTCTAAAAGACA-TCTCTTTCATTTATCTTATCT-TGCAGCTCGAATTACGTCGAACAAGAAACTC--------TACACA-TCAAGATGGCCAATCCAC
droWil2	scf2_1100000004921:3362685-3362776 -		TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATTCCCTTTCATTTCTTATCTTT-CAGAAACGAATTGCATTTAAACAAAACATAACCCCCACACACTAA-CAATTATGGCAAATCCAT
droVir3	scaffold_12855:3656510-3656590 -		ATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCGTTTTTAT--TTCTTATCTTTTTAGCTTAAAACGAATTCAACAAACAACTC--------TACTGATTGAAAATGGGTAATCCAG
droMoj3	scaffold_6540:7950566-7950583 -		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACGATGGGCAACCCAG
droGri2	scaffold_14906:6313174-6313191 -		TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATGGGCAATCCGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAAATATTATGAG--GTCACTTTCTTAAT----------GCGCGTAT----CAAA---------TTTATGACATGTGTTTTGCTTA--------------------------TTAAAAGTAAACGAAATG---------------C-----------AG--------------------------A------------------------GCTCCAAGTCTTGAAGTTTTTAATGAGAT--CTGCTCTTTTAAGAAG-GC-GACT---GATTAGCTTCAGTT-TTTTATGG-ATCTTTCTACTA-ATAAGA-TCCCTTGTATTTATCTTATCG-CACAGCTGAAATCGCTCTGAACAAACAACAC--------CACTCA-TCACGATGCCCAATCCAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................CTGAACAAACAACAC--------CACT.....................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GTAAACGAAATG---------------C-----------AG--------------------------A------------------------GCTCC.......................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CTGAACAAACAACAC--------CACTCA-TCACG.............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ATCGCTCTGAACAAACAACAC--------CACTCA-TC................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CGCTCTGAACAAACAACAC--------C........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................CTGAACAAACAACAC--------CACTC....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

AAAATATTATGAG--GTCACTTTGTTAAT----------GCGCGTAT----CAAA---------TTAATGACATGTGTTTTGCTTA--------------------------TTAAAAGTAAACGAAATG---------------C-----------AG--------------------------A------------------------GCTCCAAGTCTTGAAGTTTTTAATGAGAT--CTGCTCTATTAAGAAG-GC-GACTGATGATCAGCTTCAGTT-TCTTATGG-ATCTTTCCACTA-ACAAGA-TCCCTTGTATTTATCTTATCG-CACAGCTGAAATCGCTCTGAACAAACAACAC--------CACTCA-TCACGATGCCCAATCCAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................................................................................AATCGCTCTGAACAAACAACAC--------CA.......................	24	1	1.00	1	1	0	0	0

dm3

AAAATATTATGAG--GTCACTTTTTTAAG----------GCGCATAT----CAAA---------TTAATGACATGTGTTTTGCTTA--------------------------TTAAAAATATACGAAATG---------------C-----------AGAAATTAG-------------------TTTTATGCTCGA---------GCAAGCTCCAAGTCTTGAAGTTTTTAATGAGAT--ATGCTCTATTAAGAAG-AC-GACT---GATAAGCTTCAGTT-TTTTATGG-ATCTTTCCACTA-ATAAGA-TCCCTTGTATTTATCTTATCG-CACAGCTGAAATCGCTCTGAACAAACAACAC--------CACTCA-TCACGATGCCAAATCCAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................TTAG-------------------TTTTATGCTCGA---------GCAAGCTCCAA.....................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TTATGCTCGA---------GCAAGCTCCAAGTC..................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TAG-------------------TTTTATGCTCGA---------GCAAGCTCCA......................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TAAG----------GCGCATAT----CAAA---------TTAATGACATGT..................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TAAG----------GCGCATAT----CAAA---------TTAATGACATG...................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAACAACAC--------CACTCA-TCAC..............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAACAACAC--------CACTCA-TCACGATGCCAA......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GAAATCGCTCTGAACAAACAA....................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CG-CACAGCTGAAATCGCTCTGAACA.........................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................A-TCACGATGCCAAATCCAC	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................G-AC-GACT---GATAAGCTTCAG......................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TGAACAAACAACAC--------CACTCA-TCACGA............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AAATTTTTATGAA--GTCACACT-TTAGA----------GCACGTAT----CAAG---------TAAATGACAAGTGTTTTGGTTA--------------------------ATAAAATGAAGCGAAGAT---------------C-----------AAAAGTTAG-------------------TTTTATGATCGA---------CCGAGTTCCAAGACT------------TGAGAT--CTGCTCTATTTAGCAG-GC-AACT---GATAAGCTTAATTT-TTTTTC--TGAACACCCACTAAATAAGA-TCCCTTGTGTTTATCTTATCG-CACAGCTGAAATCGCTCTACACAAACAACAC--------CACTCA-TCACGATGCCCAATCCAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................AAACAACAC--------CACTCA-TCACGAT...........	22	1	2.00	2	0	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CTCA-TCACGATGCCCAATCCA.	21	1	1.00	1	0	0	0	1	0	0	0

droYak3

AAATCATTATAAA--ATCACATT-TTAGA----------GCGCGTAT----AAAA---------T-----------------------------------------------------------------------------------------------------------------------------------------------------AAAGACTTGAAGTTTTTCATAAGAT--CTGCTCTATTTAGAAG-AC-AACT---GATAATCTTTGTTT-TTTTTC--TGACCACCCACTAAATAAGA-GCCCTTGTATTTATCTTATCG-CACAGCTGAAATCGCGCTGAACAAACAACAC--------CACTCA-TCACGATGCCCAATCCAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................ACAAACAACAC--------CACTCA-TCACGAT...........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TATCG-CACAGCTGAAATCGCGC...............................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TGAACAAACAACAC--------CACTCA-TCACGAT...........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

GAAAACCTATCAT--ATTACTTT---------------------------------------AATTAAGAACATGTGGTTTTCTTAT-------------------------GTAAATATGTACGTGTTA---------------TGTATGATATACAATAA--------GACTTTT----TTAGTTGGGTG--------GTCTGACT------GAAGTCTTAAA-CTTTTAATTGGAT--CTGCTTTATTAAGACG-GT-GCCT---GATAAGAGTTGTATT-TTTATTTTCCCCACCCACTATATAAGA-TTCGTTGTATTTATCTTATCG-CACAGCTTGAATCTTACTGAACAATCCAAAC--------CACTCA-TCACGATGGCTAATCCAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAGAGGCTATAAGCTGTTA--TTTTTAAA----------GAGCGTAG----TATATTACG----TATCCGACATGTGTTTCG--TA--------------------------GTACAAATATACGCATCT--GAT----------C-----------AAAAAGTGG-------------------T------------------------TCTTCCAGTCTTAAA-CTTTTAATGGGAT--ACGCTCCATTTAGACG-GC-GCCT---GATAAGCCTCGTTTT-GT-----AGCCCACCCACTAAATAAGA-TCCCTTGTATTTATCTTATCG-CACAGCTGGAATAACTCAGAGCAAACAACAC--------AACTCA-TCACGATGCCCAATCCAC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TT------ATATT--GTTACTT--TTAGG---GAG-CGTACGCGTAT----TATATTACTT-AATTTGCCACATGTGTTTTAAC----------------------------GATAAAATCAGCGTAATT---------------CTTAAAAAAA-------AT-GTTATAATT----------------------------TTTT------TTTATATCTTGAA-ATTTTAATGAGAT--CCGCTTCATTTATACG-GC-GCTT---GATAAGCTTCGTTTC-TT-----AGCCCACCCACTAAATAAGA-ACCCTTGTATTTATCTTATCG-CACAGCTGAAATAGCTCTGAACAAACAACAC--------CACTCA-TCGCGATGCCCAATCCAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAATTC---------ATAT-----TAGCAGATGG-CAACAAAATAT----CCTGTTAGTTTAATTAATAACAAGCGTTTTTGA----------------------------TAAGAAATCAACGCAATC-TGTTAAACTTCGTAC-----------AGA----------------------------------------------AA------GAAGTCTAAAAAATTTTAATGGGAT--CTGCTCCATTTAGACA-GC-CCAC---GATAAGCTCCATTTC-G------AGGCCATACACTAAACAAGA-TCCCTTGTATTTATCTTATCG-CACAGCCGGAATCGCTCTGAACAAACCACAC--------CACTCA-TCACGATGCCCAATCCAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAAAAT---------ATTT-----TAGTGGATAGATAACAAAAAA-CAATTCT-TTACTTAAATTAATAACATGTGTTTTTCAT---------------------------TAAGAAATCAACGGAATC---------------C-----------ATCAAGT-G---------TTTTCCCTGTACG--------ACTGTTCTTTCC------GAAGTCGACAA-ATTTTAATGGCAT--CTGCTCTATTTAGGCA-GC-GCCT---GATAAGCTTCGTTTT-G------TGGGCACCTACTAAACAAGA-TCCCTTGTATTTATCTTATCG-CACAGCTGGAATCACTCTGAACAAACAACAC--------CACTCA-TCACGATGCCCAATCCTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAAG----------GTTCCTTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------TCA--------AGTGTTATTTCC------GAAGTCTTAAG-TTTTTAATGGGAT--GTGCTCCACTTGGAGG-GC-GACT---GATAAGATTCATGTT-T------TGCACATCCACTAAACAAGA-TCCATTGTATTTATCTTATCG-TACAGCTCAAATCGCTCTGAACAAACAACAC--------CACTCA-TCACGATGCCGAATCCAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GATATATT-------TATACT-----------TAG-AAACAAAAAATCATTGCT-T-------------------------TATAATACAAGTTTATGGCGAAGAATGTTGATGGGAAATCGTATTAAT----------------C-----------ATCAA--------AGCTATT----TTCCCTGGGTG----A------CTTGT------GAAGTCTTGAA-ATTTTAATGGGATCTCTGTTCCGTTTTGACG-ACTGCCT---GATAAGCGTCGTGTT-TA-----TACCCAGCCCCTAA--CAGA-TCCCTTACATTTATCTTATCG-CGCAGCTGGAATCGTTCTGAACAAACAACAC--------CACTCA-TCACGATGCCCAATCCAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAATAGGAT--TCGCTTTATTTGGACGTGC-GGCT---GATAAGCTTTTATG-ATTT-TG-TTCCCACCCACTAAA-AAGA-TTCCTTTCAT-TATCTTATCG-C-CAGCTTGAATCATTCTGAACAAACAACAC--------CACACA-TCACGATGCCCAATCCAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................TCATTCTGAACAAACAACAC--------CACACA-..................	26	1	22.00	22	16	6	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCATTCTGAACAAACAACAC--------CACACA-TC................	28	1	16.00	16	9	7	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TTCTGAACAAACAACAC--------CACACA-TCACGA............	29	1	7.00	7	6	1	0	0	0	0
......................................................................................................................................................................................................................................................TTATTTGGACGTGC-GGCT---GATAAGC...........................................................................................................................	25	1	5.00	5	1	3	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TTCTGAACAAACAACAC--------CACACA-TC................	25	1	4.00	4	1	3	0	0	0	0
.........................................................................................................................................................................................................................................TAGGAT--TCGCTTTATTTGGACGTGC-GGC......................................................................................................................................	28	1	4.00	4	3	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................CATTCTGAACAAACAACAC--------CACACA-TC................	27	1	4.00	4	2	2	0	0	0	0
.......................................................................................................................................................................................................................................................TATTTGGACGTGC-GGCT---GATAAGCTTT........................................................................................................................	27	1	4.00	4	2	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CACTAAA-AAGA-TTCCTTTCAT-TATCT......................................................................	26	1	3.00	3	2	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ATCATTCTGAACAAACAACAC--------CACACA-TC................	29	1	3.00	3	2	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AAGA-TTCCTTTCAT-TATCTTATCG-C-C.............................................................	26	1	3.00	3	0	3	0	0	0	0
.......................................................................................................................................................................................................................................................TATTTGGACGTGC-GGCT---GATAAGC...........................................................................................................................	24	1	3.00	3	0	2	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTGAATCATTCTGAACAAACAACAC--------CACA.....................	29	1	3.00	3	2	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CAAACAACAC--------CACACA-TCACGATGCC........	26	1	3.00	3	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCATTCTGAACAAACAACAC--------CACACA-T.................	27	1	2.00	2	1	1	0	0	0	0
........................................................................................................................................................................................................................................................ATTTGGACGTGC-GGCT---GATAAGC...........................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TCTGAACAAACAACAC--------CACACA-TC................	24	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AACAAACAACAC--------CACACA-TCACGATGCC........	28	1	2.00	2	1	1	0	0	0	0
......................................................................................................................................................................................................................................................TTATTTGGACGTGC-GGCT---GATAAGCTTT........................................................................................................................	28	1	2.00	2	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................AAGCTTTTATG-ATTT-TG-TTCCCACC...................................................................................................	25	1	2.00	2	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TTCTGAACAAACAACAC--------CACACA-TCAC..............	27	1	2.00	2	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................TATTTGGACGTGC-GGCT---GATAAGCTT.........................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................TTATTTGGACGTGC-GGCT---GATAAGCTT.........................................................................................................................	27	1	2.00	2	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................TATTTGGACGTGC-GGCT---GATAAGCT..........................................................................................................................	25	1	2.00	2	1	0	1	0	0	0
.........................................................................................................................................................................................................................................TAGGAT--TCGCTTTATTTGGACGTGC-.........................................................................................................................................	25	1	2.00	2	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................TATTTGGACGTGC-GGCT---GATAAG............................................................................................................................	23	1	2.00	2	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................TCCTTTCAT-TATCTTATCG-C-CAGCT.........................................................	25	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TTGAATCATTCTGAACAAACAACAC--------C........................	26	1	2.00	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAACAACAC--------CACACA-TCACGATGCC........	25	1	2.00	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................................T--TCGCTTTATTTGGACGTGC-GGCT---GA................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TTTCAT-TATCTTATCG-C-CAGCT.........................................................	22	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCATTCTGAACAAACAACAC--------CACAC....................	25	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TTTCAT-TATCTTATCG-C-CAGCTTGAA.....................................................	26	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TTCTGAACAAACAACAC--------CACACA-TCA...............	26	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCAT-TATCTTATCG-C-CAGCTTGAATCA..................................................	27	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TGAATCATTCTGAACAAACAACAC--------CACA.....................	28	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................AATAGGAT--TCGCTTTATTTGGACGT............................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CATTCTGAACAAACAACAC--------CACACA-..................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................CGCTTTATTTGGACGTGC-GGCT---GATAA.............................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TG-ATTT-TG-TTCCCACCCACTAAA-AAGA-......................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................TTTAATAGGAT--TCGCTTTATTTGGACG.............................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TCCTTTCAT-TATCTTATCG-C-CAGCTTGAA.....................................................	29	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................GGACGTGC-GGCT---GATAAGCTTTTATG-AT.................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................TTGGACGTGC-GGCT---GATAAGCTTTTAT.....................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................T---GATAAGCTTTTATG-ATTT-TG-TTCCCACC...................................................................................................	29	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................GATAAGCTTTTATG-ATTT-TG-TTCCCACCC..................................................................................................	29	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................TAGGAT--TCGCTTTATTTGGACGTGT-.........................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................AAGA-TTCCTTTCAT-TATCTTATCG-C-CAG...........................................................	28	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................TTTGGACGTGC-GGCT---GATAAGCTT.........................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TGAACAAACAACAC--------CACACA-TCACGATGC.........	29	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCTTATCG-C-CAGCTTGAATCA..................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCAT-TATCTTATCG-C-CAGCT.........................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................A-AAGA-TTCCTTTCAT-TATCTTATCG-C-C.............................................................	27	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................T--TCGCTTTATTTGGACGTGC-GGCT---..................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................TTAATAGGAT--TCGCTTTATTTGGACG.............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................AGA-TTCCTTTCAT-TATCTTATCG-C-..............................................................	24	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TTCAT-TATCTTATCG-C-CAGCTTGAA.....................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CACACA-TCACGATGCCCAATC...	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................TATG-ATTT-TG-TTCCCACCCACTAAA-...........................................................................................	25	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TAAGCTTTTATG-ATTT-TG-TTCCCACC...................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TCATTCTGAACAAACAACAC--------CACACA-C.................	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................TTATTTGGACGTGC-GGCT---GATAAGCT..........................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................ATTCTGAACAAACAACAC--------CACACA-TC................	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................TTTTAATAGGAT--TCGCTTTATTTGGA...............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TTCCTTTCAT-TATCTTATCG-C-CAGCT.........................................................	26	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAACAACAC--------CACACA-TCAC..............	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GA-TTCCTTTCAT-TATCTTATCG-C-CAGC..........................................................	27	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCAT-TATCTTATCG-C-CAGCTTGAA.....................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TAAGCTTTTATG-ATTT-TG-TTCCCACCCAC................................................................................................	29	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TTCCTTTCAT-TATCTTATCG-C-CAG...........................................................	24	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TCTTATCG-C-CAGCTTGAATCATTCT..............................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TATCTTATCG-C-CAGCTTGAATCATTC...............................................	26	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TTCTGAACAAACAACAC--------CACACA-TCACG.............	28	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................CCACCCACTAAA-AAGA-TTCCTTTC..............................................................................	24	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................TT-TG-TTCCCACCCACTAAA-AAGA-TTCC..................................................................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................TTATTTGGACGTGC-GGCT---GATAAG............................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAACAACAC--------CACACA-TCACG.............	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................GAT--TCGCTTTATTTGGACGTGC-GG.......................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................ATAGGAT--TCGCTTTATTTGGACGTGC-.........................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................TAGGAT--TCGCTTTATTTGGACGTGC-GG.......................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................TAATAGGAT--TCGCTTTATTTGGACGTGC-.........................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CAAACAACAC--------CACACA-TCACGATGCCCA......	28	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................TCGCTTTATTTGGACGTGC-GGC......................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................TCGCTTTATTTGGACGTGC-GGCT---GA................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ACAACAC--------CACACA-TCACGATGCC........	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TTCAT-TATCTTATCG-C-CAGCTTG.......................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TTCAT-TATCTTATCG-C-CAGCTTGAATCA..................................................	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................TATTTGGACGTGC-GGCT---GATAA.............................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................TCGCTTTATTTGGACGTGC-GGCT---G.................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTTGGACGTGC-GGCT---GATAAGCTTTTA......................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................TAATAGGAT--TCGCTTTATTTGGACGT............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TG-ATTT-TG-TTCCCACCCACTAAA-AAGA-T.....................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................TTCAT-TATCTTATCG-C-CAGCTTGAAT....................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TG-ATTT-TG-TTCCCACCCACTAAA-AAGA-A.....................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................T--TCGCTTTATTTGGACGTGC-GGC......................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................AATAGGAT--TCGCTTTATTTGGACG.............................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TCCTTTCAT-TATCTTATCG-C-CAGCTTGA......................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TATCTTATCG-C-CAGCTTGAATC...................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................CCTTTCAT-TATCTTATCG-C-CAGCTTG.......................................................	26	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................GAATCATTCTGAACAAACAACAC--------CA.......................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................CGCTTTATTTGGACGTGC-GGCT---G.................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GA-TTCCTTTCAT-TATCTTATCG-C-CAG...........................................................	26	1	1.00	1	1	0	0	0	0	0

droBip1

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAACAGACT--TCGCTTTATATAGAAGGGC-GGCT---GATAAGCTTTTATG-ATTTTTGTTTCCCACCCACTAAA-AAGA-TTCCTTTCAC-TATCTTATCG-C-CAGCTTGAATCATTCTGAACAAACAACCC--------CACACA-TCACGATGCCCAATCCAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---GATAAGATTCGCAAT-TTG----TTCAGACCCTCTAAAAGACA-TCTCTTTCATTTATCTTATCT-TGCAGCTCGAATTACGTCGAACAAGAAACTC--------TACACA-TCAAGATGGTCAATCCAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................ATTACGTCGAACAAGAAACT..................................	20	1	11.00	11	1	8	0	0	0	0	2	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ATTACGTCGAACAAGAAACTC--------TACAC....................	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGAATTACGTCGAACAAGAAACTC--------TACAC....................	29	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAAACTC--------TACACA-TCAAGATGGT........	23	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGAATTACGTCGAACAAGA......................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GAATTACGTCGAACAAGAAACT..................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AATTACGTCGAACAAGAAACT..................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ATTACGTCGAACAAGAAACTC--------TAC......................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	2
........................................................................................................................................................................................................................................................................................................................................................................AACTC--------TACACA-TCAAGATGGTC.......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGAATTACGTCGAACAAGAAACT..................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AACTC--------TACACA-TCAAGATGGT........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................TCTTTCATTTATCTTATCT-TG..............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AGAAACTC--------TACACA-TCAAGA............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GCTCGAATTACGTCGAACAAGA......................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGAATTACGTCGAACAAGAAACTC--------TA.......................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TACGTCGAACAAGAAACTC--------TACAC....................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AACTC--------TACACA-TCAAGATG..........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CGTCGAACAAGAAACTC--------TACAC....................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAAACTC--------TACACA-TCAAGATGGTC.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CACA-TCAAGATGGTCAATCC..	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAAACTC--------TACACA-TCAAGA............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ATTACGTCGAACAAGAAACTC--------.........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GAATTACGTCGAACAAGAAACTC--------TACAC....................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAAACTC--------TACACA-TCAAGATGGTCAATC...	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................C--------TACACA-TCAAGATGGTCA......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACAAGAAACTC--------TACACA-TC................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AAACTC--------TACACA-TCAAGATGGTC.......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GAACAAGAAACTC--------TACACA-TCAAGATG..........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................CGAACAAGAAACTC--------TACACA-TCAAGA............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GTATTA----------------------------------------------------------------------------CTTC--------------------------ATGAAATTAACTAAGATGC-AAT----------C-----------AG--------------------------A------------------------AGT-CAAGAGTTTTA-ATTTTAATGGGTT--G------------GGG-CG-ATCT---GATAAGATTCGCAAT-TTG----TTCAGACCCTCTAAAAGACA-TCTCTTTCATTTATCTTATCT-TGCAGCTCGAATTACGTCGAACAAGAAACTC--------TACACA-TCAAGATGGCCAATCCAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................................................ATTACGTCGAACAAGAAACT..................................	20	1	24.00	24	22	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGAATTACGTCGAACAAGAAACT..................................	23	1	6.00	6	6	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AACTC--------TACACA-TCAAGATGGCC.......	22	1	4.00	4	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AATTACGTCGAACAAGAA.....................................	18	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AATTACGTCGAACAAGAAACT..................................	21	1	3.00	3	3	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................GAAACTC--------TACACA-TCAAGATGGCC.......	24	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACAAGAAACTC--------TACACA-TCAAGATGGCC.......	28	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAGAAACTC--------TACACA-TCAAGATGGCC.......	26	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CGAATTACGTCGAACAAG.......................................	18	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTC--------TACACA-TCAAGATGGCC.......	27	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................AAACTC--------TACACA-TCAAGATGGCC.......	23	1	2.00	2	0	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ATTACGTCGAACAAGAAACC..................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ATTACGTCGAACAAGAAACTC--------T........................	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AACTC--------TACACA-TCAAGATGGCCA......	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................ATTACGTCGAACAAGAAACTC--------TAC......................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GAATTACGTCGAACAAGAAACT..................................	22	1	1.00	1	1	0	0	0	0	0

droWil2

TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATTCCCTTTCATTTCTTATCTTT-CAGAAACGAATTGCATTTAAACAAAACATAACCCCCACACACTAA-CAATTATGGCAAATCCAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................................................................................................................................................................ACAAAACATAACCCCCACACA.......................	21	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CACACTAA-CAATTATGGCA.......	19	1	1.00	1	0	0	0	1	0

droVir3

ATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCGTTTTTAT--TTCTTATCTTTTTAGCTTAAAACGAATTCAACAAACAACTC--------TACTGATTGAAAATGGGTAATCCAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................TACTGATTGAAAATGGGTAAT....	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CTC--------TACTGATTGAAAATGGGT.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................TAAAACGAATTCAACAAACAAA...................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AGCTTAAAACGAATTCAAC..........................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................C--------TACTGATTGAAAATGGGTAATCCAG	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................ACTGATTGAAAATGGGTAATCC..	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAACAACTC--------TACTGATTGAAAATGGGT.......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TACTGATTGAAAATGGGTAATCCAG	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACGATGGGCAACCCAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATGGGCAATCCGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_22508

3r:12085713-12085862 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.1	-27.1	-27.1