ID:

dsi_22507

 Coordinate:

3l:15775625-15775814 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-14.09 -13.96

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTGCGCGCTGAAAATTATTTAAACTCGAGCAGAAAACACCCAGAAAAGCAGTAGGAAACGGCAACAAAAAAATATGACAACAAGCCAGAGTTCTTACACCGAGCAAACCAGCAGCCAAACAAAGTGAAGCAAAATAAGCAGCAGCAAATAATAAATAAATACACAAAGCCAACATATTCAACTCACACACACACACATAGCCAGCGTTCCTGTACTCAAAAGCATTCCTAATCGCCGCAGAAAAAATAACAACAAGCATCAGAAAGCAGAAATAACATCAACAAAAATTC
**************************************************(((((((..(((.....................)))....))))))).............((.((.......((.(((((.......((((.(((............................................................))).))))........)).)))))....)).))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
 M053
female body
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
.............................CAGAAAACACCCAGAAAAGCA................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................CACATAGCCAGCGTTCCTG.............................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0
........................TCGAGCAGAAAACACCCAG....................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0
..............................................AGCAGTAGGAAACGGCAACAA............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................CCTGTACTCAAAAGCATTCCTAATCGC....................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TCCTGTACTCAAAAGCATTCCTAATCGC....................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................CACACACACACACATAGCCAG...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0
...................................................................................................................................................................................................................GTACGCAAAAGGAGTCCTAA........................................................... 20 3 16 0.06 1 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................CAAACATGAGAAAGCCGAAA.................. 20 3 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

CACGCGCGACTTTTAATAAATTTGAGCTCGTCTTTTGTGGGTCTTTTCGTCATCCTTTGCCGTTGTTTTTTTATACTGTTGTTCGGTCTCAAGAATGTGGCTCGTTTGGTCGTCGGTTTGTTTCACTTCGTTTTATTCGTCGTCGTTTATTATTTATTTATGTGTTTCGGTTGTATAAGTTGAGTGTGTGTGTGTGTATCGGTCGCAAGGACATGAGTTTTCGTAAGGATTAGCGGCGTCTTTTTTATTGTTGTTCGTAGTCTTTCGTCTTTATTGTAGTTGTTTTTAAG
**************************************************(((((((..(((.....................)))....))))))).............((.((.......((.(((((.......((((.(((............................................................))).))))........)).)))))....)).))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M023
head
 GSM343915
embryo
.........................................................................................................................................................................................................GTCGCAAGGAGGTGAGGTTTC.................................................................... 21 3 1 6.00 6 6 0 0 0 0 0 0 0 0
......................................................................................................................................ATTTGTCGTGGTTTATTTTTTATT.................................................................................................................................... 24 3 2 1.00 2 0 2 0 0 0 0 0 0 0
.................................................................................TTCGGTCTCAAGAATGTGGCT............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................ATAAGTTGAGTGTCTGTTTGT............................................................................................... 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................GTTGTATAAGTTGGCTGTTTGT................................................................................................... 22 3 4 0.50 2 0 0 0 2 0 0 0 0 0
................................................................................................GAGGCTCGTTAGGTGGTCGGT............................................................................................................................................................................. 21 3 5 0.40 2 0 2 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGTCGCAAGGAGGTGAGGTTT..................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................ATTTGTCGTGGTTTATTCTTTATT.................................................................................................................................... 24 3 3 0.33 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................TTTGTCGTGGTTTATTCTTTATT.................................................................................................................................... 23 3 7 0.29 2 0 0 0 0 1 0 1 0 0
.................AAATGTGAGCTCGTCTATGGT............................................................................................................................................................................................................................................................ 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TCGCAAGGAGGTGAGGTTTC.................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TCGTCTTTATTCAAGTTGTT...... 20 2 5 0.20 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................GTCGCAAGGAGGTGAGGTTT..................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0
.........................................................................................AAAGATTGTGGCTCGTTT....................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0
........................................................................................................................................TTGTCGTGGTTTATTCTTTATT.................................................................................................................................... 22 3 17 0.06 1 0 0 0 0 1 0 0 0 0
..............................................................TTGTTTTTTTAGACTG.................................................................................................................................................................................................................... 16 1 18 0.06 1 0 0 0 0 0 1 0 0 0
CATGCGTGACTTTTAAAAAA.............................................................................................................................................................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................................TTATTGTAGTTGGTCTTA.. 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................TGGCGTTGTTTTTTTA......................................................................................................................................................................................................................... 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 09:05 PM