dsi_22505

Name	Class	Family	Strand
(CATA)n	Simple_repeat	Simple_repeat	+

GTCATCATTTGTTATGTACTGGGTACATATGTATGTTTGTACACAACTATGTAAGTATGTATGTATGTATACACCAGTTTTTCCACTGCACACACACACATATATAGTTCCTTGTGTGCTACTTGCCAACTAGAAACGGAAAACTGAAAACTGGGTTATTGGCGCGCGAATCTCTTGCGAATCTTGCCTCGCCGCTCCCTTGCTAAATCATTTTGCTTCTTCTCTCTTGCCCTCCTCCGCTGCACCGCTG ************************************************..((.(((((((((.(((......((((......)))).....))).))))))))).))..((((((((((...(((...(((...(((....)))....))))))...)))))))))).......((((........))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
...................................................................................................................................................AAAGTGGGTTATTGACGCCC...................................................................................	20	3	3	0.33	1	1	0	0
.................................................................................................................................................................................CGGGTCTTGCCTCGGCGCT......................................................	19	3	7	0.14	1	0	0	1
...........................TATGTATGTTTGTACA...............................................................................................................................................................................................................	16	0	9	0.11	1	0	1	0
..............................................................................................................................CAACTGGAAACGGAAAA...........................................................................................................	17	1	20	0.05	1	0	1	0
...................................................TAAGTATGTAGGTATGT......................................................................................................................................................................................	17	1	20	0.05	1	0	1	0

CAGTAGTAAACAATACATGACCCATGTATACATACAAACATGTGTTGATACATTCATACATACATACATATGTGGTCAAAAAGGTGACGTGTGTGTGTGTATATATCAAGGAACACACGATGAACGGTTGATCTTTGCCTTTTGACTTTTGACCCAATAACCGCGCGCTTAGAGAACGCTTAGAACGGAGCGGCGAGGGAACGATTTAGTAAAACGAAGAAGAGAGAACGGGAGGAGGCGACGTGGCGAC ************************************************..((.(((((((((.(((......((((......)))).....))).))))))))).))..((((((((((...(((...(((...(((....)))....))))))...)))))))))).......((((........))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	M053 female body	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	SRR618934 dsim w501 ovaries
.........................................................................................................................................................................TAGAGAACGCTTAGAACGG..............................................................	19	0	1	1.00	1	0	0	1	0	0	0
..................................................................................................................ACACGATGAACGGTTGATCTTTGCCT..............................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
.................................................................................................................CACACGATGAACGGTTGATCTT...................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0
............................................................................................................................CGGTTGATCTTTGCCTTT............................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
...............................................................................AAAGGCCACGTGTGTGTGTGT......................................................................................................................................................	21	2	13	0.08	1	0	0	0	1	0	0
..................................................................................................................................................................................................................................AACCAGAGGTGGCGACGTGG....	20	3	14	0.07	1	0	0	0	0	1	0
.................................................................................AGGTGTCGTGTGTGTG.........................................................................................................................................................	16	1	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:6224722-6224971 -	dsi_22505	GTCATCATT------------------T-GTTATGTA-CTGGGTACAT--------ATGTAT----GTTTGT-----A--------CACAACTATGTAAGTATGTATG----TATG------TATACACCAGTTTTTCCACTGCACACA------------------------------------------------------------------------------------------------------------------------------CA--CACATATATAG--TTCCTTGTGTGCT-----A--CTTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCGCCGCTCCCTTGC----TAAATCATTT-------TGCTTCTTC--------------------------------------------------------T---------CTCTTG-------------CCCTCCTC---------------------------------C---------GCTGCA------C-CG-CTG
droSec2	scaffold_1:3054311-3054562 -		GTCATCATT------------------T-GTTATGTA-CTGGGGACAT--------ATGTAT----GTTTGT-----T--------CACAACTATGTAAGTATGTATG----TATG------CATACACAAGTTTTTCCACTGCACACA------------------------------------------------------------------------------------------------------------------------------CACACACATTTATAG--TTCCTTGTGTGCT-----A--CTTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCGCCGCTCCCTTAC----TAAATCATTT-------TGCTTCTTC--------------------------------------------------------T---------CTCTTG-------------TCCTCCTC---------------------------------C---------GCTGCA------G-CA-CTG
dm3	chr2R:5439659-5439891 -		GTCATCACT------------------T-GTTATGTA-CTGGGTACAT--------AT--------GTATGT----A-TTTATGTACACAA------------GTATG----TATG------TATACACCAGTTTTTCCACTGCACACACA----------------------------------------------------------------------------------------------------------------------------CATATACATGTATAG--TTCCTTGTGTGCT-----A--CTTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCGCCGCTCCCTTG------------------------CTTCATC--------------------------------------------------------T---------CTCTCG-------------CCCTCCTC---------------------------------C---------GCTGCA------C-CG-CTG
droEre2	scaffold_4929:8917361-8917666 +		GTCATCACT------------------T-GTTATGTA-CTGGGTATAT--------AA--------GTAGGC-----A----------TG------------TATATG----TATG------CATACACCAGTTTTTCCACTGCACACATACATAC----------------------------------------------------------------------------------------------------------------------ATGCATACATAGATAG--TTCCTTGTGTGCT-----A--CTTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCGCCTCTCCCTTGCTTCCTACACCATTC-------TGCTTCTTCGCCCTCCTCT--------------------ACCTCCTTCTCCTCCTCTTCTTATTCT----------TATT----------------TTA--------------CTTCCATTTTCCACTTGGCACGCAAAGCTGCAGCTGCA------C-CG-CTG
droYak3	2L:18070626-18070911 -		GTCATCACT------------------T-GTTATGTA-CTGAGTACAT--------AC--------GTAA---------------------------------GTATG----TATG------CATATACCAGTTTTTCCACTGCACACATGCATAC-------------------------------------------------------ACACACATATA-------------------------------------------------------TGTACATACATAT--TTCCTTGTGTGCT-----A--CTTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCGT--------------GCCTCGCCTCTCTCTTGC----TACATCCATC-------TGCTTCTTC--------------------------------------------------------T---------TCCTCG-------------CCCTCCTCTTCTACTTGTTCTTCCATTTTCCACTTGGCACGCAAAGCTGCAGCTGCA------C-CG-CTG
droEug1	scf7180000409209:724962-725210 +		GTCATCACT------------------T-GTTATGTA-TTGAGTATGT--------AT--------GAATGT-----G--------CATA------------TATAAG----TTAG------TATATACCAGTTTTTCTACTACATACA------------------------------------------------------------------------------------------------------------------------------CA--CATACAGACAG--TTCTTTGTGTGCA--AGTA--AGTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------TCTTCTCCCT-TCCTCCT----------------------TC-------------TTTT-------------------------------------------TCT----------TCTTG-------------T---C--------------CTTCCATTTTCCACTTGGCACGCAAAGTTGCAGCCGCA------C-CG-TTG
droBia1	scf7180000301506:1282543-1282805 +		GTCATCACT------------------T-GTTATGTG-CTGGCTATGT--------AC----TTTTGCAGGC-----A--------CCTA------------CATATG----TAAG------TATATACCAGTTTTTCCACTGCACACA------------------------------------------------------------------------------------------------------------------------------CAGACGCACAGAAAG--TTCTTTGTGCACG--AGTA--AGTGGCAAC--TAGAAGCGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTTTTGCGAATCTT--------------GCCCCTTC-----CCCCGTCT-------------------TC-------------TTC----------------------------------------------T---------CTTT--CCCATTCTCCCA---CTG--------------CTTCCATTTTCCACTTGGCACGCAAAGCTGCAGCTGCA------C-CG-TTG
droTak1	scf7180000415401:498548-498779 -		GTCATCACT------------------T-GTTATGTA-TTGGGTATGT--------AT--------ATAAGT-----A------------------------AATACA----TGTG------TATATACCAGTTTTTCCACTGCACACG--------------------------------------------------------------------------------------------------------------------------------CACACAGAGACAG--TTCTTTGTGTACA--AGTA--AGTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTTTCGCGAATCTT--------------GCTTCTCCTC----------------------------------CATC--------------------------------------------------------T---------CCCT-----------------CTT--------------CTTCCATTTTCCACTTGGCACGCAAAGCTGCAGCTGCA---------G-TTG
droEle1	scf7180000491107:1674617-1674839 +		GTCATCACT------------------T-GTTATGTA-CTGGGTATAT--------AC--------ACACGT-----A------------------------CATACA----TACA------TATATACCAGTTTTTCCACTGCAC--------------------------------------------------------------------------------------------------------------------------------------ACATAGACAA--TTCTTTGTGGGCA--AGTA--AGTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCTCTCT-CCCTCGA-----------------------------------------------------------------------------------------------------A----CT---------CTC--------------CTTCCATTTTCCACTTGGCACGCAAAGCT------GCA------T-CA-ATG
droRho1	scf7180000777217:324966-325198 -		GTCATCACT------------------T-GTTATGTA-TGGTGTATAT--------AC--------ACATGT-----A------------------------CCTATG----TACA------TACATACCAGTTTTTCCACTGCAC--------------------------------------------------------------------------------------------------------------------------------------ACATTGACAG--TTCTTTGTGTGCA--AGTA--AGTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCTTCCT-CCCTCC----------------------------------------------------------------------------------------------------------------------CTGCT--CATCAC----AATCCGTTTTCCACTTGGCACGCAAAGCTGCAGCTGCA------T-CG-TTG
droFic1	scf7180000453858:1269347-1269577 +		GTCATCACA------------------T-GTTATGTATCTGAGTATGT--------AT--------GTATGT-----A----------------------------TGTATGTATT----T-TATATACGAGTTTTTCC---GCACA------------------------------------------------------------------------------------------------------------------------------------CACACAGACAG--TTCTTTGTGTGC---AGTA--AGTGCCAAC--TAGAAACGGAAAACTGAAAACTAGGTTATTGGCG--------CGCGAATCTCC-----AACTT--------------GCCACTGCCC-CCCTCA------------TT---------------------------------------------------------------------------------------------TTCTTCC-T--------TCTTCAC-------CGATTTTCCACTTGGCACGCAAAGCTGCAGCTGCA------C-CA-TTG
droKik1	scf7180000302476:827139-827430 -		GTCATCACTTGGCGCAACTAGAAAACTT-GCTATGTA-CCATGTATAC--------AT--------A-----------CTTAT------------CCG----TGTATG----TATGTTTTTACATATACCAGTTTTTCCACTACATACAAA----C----------------------------------------------------------------------------------------------------------------------GCATATACAGAGATAG--TTCTTTGTGTGCA--AGTA--AGTGCAAAC--TAGAAACAGAAAACAGAAAACTGGGTTATTGGCG--------CGCGATTCTCC-----ATCTT---C--TATCCCTCTCTTCGCCTCTCCTTTC------------------------------------------------------GCCATCCACCTCCTTCGCCA---------------------------------C-------T--------CTTTTGCT------GCATTTTCCACTTGGCACGCGAAGCTGCAGCTGCA------T-CG-TTG
droAna3	scaffold_13266:186344-186555 +		GTCATCACT------------------A-ACTATTTA-CCAACTACAT--------AC--------ATACAC-----A----------TA------------CATACA----TAAG------AAAAAA----------------ACATGAACATAC-------------------------------------------------------ATGCA----CATTATTTGTAGCTTTTTTTACTTCTTCTTCTTCT-TTTTTATTGCACAAACTCACGAACATAGTGGCAA--CGCTTTGTGTGCA--------AGTACAAAC--TAGAAACAGA-------AAACTAGGTTATTGGCG--------CGCGAATCTTC-----------CTCT-------------TTC-------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------TTT
droBip1	scf7180000396730:1207042-1207304 +		GTCATCACT------------------AAGCTATTTA-CCAAGTAAAT--------AT--------GTACATACATA-CTTAC------------AAT----CAT------------------------------TTTCATTT---ATGCTTTATTTTAAAAATATTCATCTTTAGTTTTACTTTGATTTGAATTTAAAATAAAAGAAAAA---------C--AATTTGTA------TTTGCTTCTTCTTCAT----TTTT--TGCACAAACCTACGAACATAGTGGCAA--CGCTTTGTGTGCA--------AGCACAAAC--TAGAAACAGAA-------AACTGGGTTATTGGCG--------CGCGAATCTCC-----------CTCT-------------TT-------------------------------------------------------------------------------------------------------------------------------TTTTTTTC---------------------------------T---------ACTGCA--------------
dp5	3:15881119-15881446 -		GTCATCACTTTGCACATCTAGAAAACTT-GTTATACA-C-----ACAC--------ATGTACATATGTATAT----A-CTTAT------------ATGACTACATATG----TATG------TATTTACAAAAACAGCCGCTGCAC-----------------------------------------------------------------------------------------TTCTTGTTCTTTTCTCCTTTTTTTTCCA--AG-CAACACACAACTACAACGACAGCGTTTCTTGTATGCTTCGACG--AGTGCCAAC--TAGAAACAGAA-------AACTGGGTTATTGGCGCAAAT---------GCGCGCGCGAATCTTCATC-------------TCTC-----CCCCACTCC-------------------AC-------------TTCATTGA-----------------------------------------------------T---CACATTCTCCC-T--------TTCTTGCTGC------A-GTTCCACTTGGCACGCGAAGCTGCAGCAGCAGCCAAGT-TGTCTG
droPer2	scaffold_4:880512-880834 +		GTCATCACTTTGCACATCTAGAAAACTT-GTTATACA-C-----ACAC--------AT--------GTACATATATA-CTTAT------------ATG----CATATG----TATG------TCTTTACAAAAACAGCCGCTGCAC-----------------------------------------------------------------------------------------TTCTTGTTCTTTTCTCCTTT-TTTTCCA--AG-CAACACACAACTACAACGACAGCGTTTCTTGTATGCTTCGACG--AGTGCCAAC--TAGAAACAGAA-------AACTGGGTTATTGGCGCAAAT---------GCGCGCGCGAATCTTCATC-------------TCTCCCT-CCCCCACTCC-------------------AC-------------TTCATTGA-----------------------------------------------------T---CACATTCTCCC-T--------TTCTTGCTGC------A-GTTCCACTTGGCACGCGAAGCTGCAGCAGCAGCCAAGT-TGTCTG
droWil2	scf2_1100000004954:3817352-3817596 +		CATCT---------------------------------------ACATATGT----AT--------GTATGT-----A--------CATACCTATGTACGTATA--------CATT------------TTCGTTAGGCAAATGTGCATGCATATGT-------------------------------------------------------ATGTA----TA---------------------------------------------------------TGTATGTACAT--ATGTATGTATGTA--CGTACATTTGTCAATGCTGCCCGAGGAAAATAAGAAACT--------------------TGCAGACTTCTTGCGAAGCTTT-------------GGAATG--GCGTGTTTGC----TAAATTGTTAGATAAATTGCT-AATC--------------------------------------------------------AACTTTTTTTCACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------CATG-CTT
droVir3	scaffold_10324:221260-221426 -		CAC-----------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------CA--CACACAGACGAAGCT-TTTGTATGCG-CGCTA--AGTGCAAAC--TAGAAACCGA--------AACTGGGTTATTGGTGCAAATGCGCGCGCGTTT-----------TTTTTT-------------TTC------TTCAACCT-------------------GC-------------TTTG-------------------------------------------CCT---------GCC---TCTACTCCCCC-T--------TCCTACACGC--------TGTTAACTTTGCCTTC---------GTTAAG------T-AG-CTG
droMoj3	scaffold_6496:2040414-2040632 -		TGCA---CA------------------T-GTTATTCA-C-----AT------------------------------------------------------------------------------------------------ACACACA------C----------------------------------------------------------------------------------------------------------------------ACTCACACAGAAGCAGAGCT-TTTGTATGCC-CGCTA--AGTGCAAAC--TAGAAACAGA--------AACTGGGTTATTGGTGCAAATGCGCGCGCGTTT-----------TTCTTTTT-------ATTTCTT-----CTACAACCT-------------------GC-------------TTTGGTCTTCTCGTTCTCTTTCTCACTGCATGGCCA------------------------------------------CCCC----TCTCTGCTGC------T-TATTAACTTCGCCTACGTTGCTC--------------T-TG-GTG
droGri2	scaffold_14624:2198168-2198277 +		ATGTGTATC------------------A-AT-------CTATGTATGT----ACATATGTAT----GTATGT-----A--------CATATGTATGTATGTACATATG----TATG------TATGTA---------------CATATG-----------------------------------------------------------------------TA---------------------------------------------------------TGTATGTACAT--ATGTATGTATGTA--CTTA--TGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GTCATCATT------------------T-GTTATGTA-CTGGGTACAT--------ATGTAT----GTTTGT-----A--------CACAACTATGTAAGTATGTATG----TATG------TATACACCAGTTTTTCCACTGCACACA------------------------------------------------------------------------------------------------------------------------------CA--CACATATATAG--TTCCTTGTGTGCT-----A--CTTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCGCCGCTCCCTTGC----TAAATCATTT-------TGCTTCTTC--------------------------------------------------------T---------CTCTTG-------------CCCTCCTC---------------------------------C---------GCTGCA------C-CG-CTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................T--------ATGTAT----GTTTGT-----A--------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GTCATCATT------------------T-GTTATGTA-CTGGGGACAT--------ATGTAT----GTTTGT-----T--------CACAACTATGTAAGTATGTATG----TATG------CATACACAAGTTTTTCCACTGCACACA------------------------------------------------------------------------------------------------------------------------------CACACACATTTATAG--TTCCTTGTGTGCT-----A--CTTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCGCCGCTCCCTTAC----TAAATCATTT-------TGCTTCTTC--------------------------------------------------------T---------CTCTTG-------------TCCTCCTC---------------------------------C---------GCTGCA------G-CA-CTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................AAACTGGGTTATTGGCG--------CGCG...........................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CGAATCTCTTGCGAATCTT--------------GCCTC.......................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0

dm3

GTCATCACT------------------T-GTTATGTA-CTGGGTACAT--------AT--------GTATGT----A-TTTATGTACACAA------------GTATG----TATG------TATACACCAGTTTTTCCACTGCACACACA----------------------------------------------------------------------------------------------------------------------------CATATACATGTATAG--TTCCTTGTGTGCT-----A--CTTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCGCCGCTCCCTTG------------------------CTTCATC--------------------------------------------------------T---------CTCTCG-------------CCCTCCTC---------------------------------C---------GCTGCA------C-CG-CTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................AATCTCTTGCGAATCTT--------------GCCT........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TAG--TTCCTTGTGTGCT-----A--CTTGCCAAC--.........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TGGGTTATTGGCG--------CGCGAATC.......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TTGCCAAC--TAGAAACGGAAAACTGAAAAC....................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TGTGCT-----A--CTTGCCAAC--TAGAAACGGA...............................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GTCATCACT------------------T-GTTATGTA-CTGGGTATAT--------AA--------GTAGGC-----A----------TG------------TATATG----TATG------CATACACCAGTTTTTCCACTGCACACATACATAC----------------------------------------------------------------------------------------------------------------------ATGCATACATAGATAG--TTCCTTGTGTGCT-----A--CTTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCGCCTCTCCCTTGCTTCCTACACCATTC-------TGCTTCTTCGCCCTCCTCT--------------------ACCTCCTTCTCCTCCTCTTCTTATTCT----------TATT----------------TTA--------------CTTCCATTTTCCACTTGGCACGCAAAGCTGCAGCTGCA------C-CG-CTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..CATCACT------------------T-GTTATGTA-CTGGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

droYak3

GTCATCACT------------------T-GTTATGTA-CTGAGTACAT--------AC--------GTAA---------------------------------GTATG----TATG------CATATACCAGTTTTTCCACTGCACACATGCATAC-------------------------------------------------------ACACACATATA-------------------------------------------------------TGTACATACATAT--TTCCTTGTGTGCT-----A--CTTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCGT--------------GCCTCGCCTCTCTCTTGC----TACATCCATC-------TGCTTCTTC--------------------------------------------------------T---------TCCTCG-------------CCCTCCTCTTCTACTTGTTCTTCCATTTTCCACTTGGCACGCAAAGCTGCAGCTGCA------C-CG-CTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTTCCATTTTCCACTTGGCACG..............................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCACTTGGCACGCAAAGCTGCAG...................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TAGAAACGGAAAACTGAAAAC....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1

droEug1

GTCATCACT------------------T-GTTATGTA-TTGAGTATGT--------AT--------GAATGT-----G--------CATA------------TATAAG----TTAG------TATATACCAGTTTTTCTACTACATACA------------------------------------------------------------------------------------------------------------------------------CA--CATACAGACAG--TTCTTTGTGTGCA--AGTA--AGTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------TCTTCTCCCT-TCCTCCT----------------------TC-------------TTTT-------------------------------------------TCT----------TCTTG-------------T---C--------------CTTCCATTTTCCACTTGGCACGCAAAGTTGCAGCCGCA------C-CG-TTG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTCATCACT------------------T-GTTATGTG-CTGGCTATGT--------AC----TTTTGCAGGC-----A--------CCTA------------CATATG----TAAG------TATATACCAGTTTTTCCACTGCACACA------------------------------------------------------------------------------------------------------------------------------CAGACGCACAGAAAG--TTCTTTGTGCACG--AGTA--AGTGGCAAC--TAGAAGCGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTTTTGCGAATCTT--------------GCCCCTTC-----CCCCGTCT-------------------TC-------------TTC----------------------------------------------T---------CTTT--CCCATTCTCCCA---CTG--------------CTTCCATTTTCCACTTGGCACGCAAAGCTGCAGCTGCA------C-CG-TTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTCATCACT------------------T-GTTATGTA-TTGGGTATGT--------AT--------ATAAGT-----A------------------------AATACA----TGTG------TATATACCAGTTTTTCCACTGCACACG--------------------------------------------------------------------------------------------------------------------------------CACACAGAGACAG--TTCTTTGTGTACA--AGTA--AGTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTTTCGCGAATCTT--------------GCTTCTCCTC----------------------------------CATC--------------------------------------------------------T---------CCCT-----------------CTT--------------CTTCCATTTTCCACTTGGCACGCAAAGCTGCAGCTGCA---------G-TTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTCATCACT------------------T-GTTATGTA-CTGGGTATAT--------AC--------ACACGT-----A------------------------CATACA----TACA------TATATACCAGTTTTTCCACTGCAC--------------------------------------------------------------------------------------------------------------------------------------ACATAGACAA--TTCTTTGTGGGCA--AGTA--AGTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCTCTCT-CCCTCGA-----------------------------------------------------------------------------------------------------A----CT---------CTC--------------CTTCCATTTTCCACTTGGCACGCAAAGCT------GCA------T-CA-ATG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTCATCACT------------------T-GTTATGTA-TGGTGTATAT--------AC--------ACATGT-----A------------------------CCTATG----TACA------TACATACCAGTTTTTCCACTGCAC--------------------------------------------------------------------------------------------------------------------------------------ACATTGACAG--TTCTTTGTGTGCA--AGTA--AGTGCCAAC--TAGAAACGGAAAACTGAAAACTGGGTTATTGGCG--------CGCGAATCTCTTGCGAATCTT--------------GCCTCTTCCT-CCCTCC----------------------------------------------------------------------------------------------------------------------CTGCT--CATCAC----AATCCGTTTTCCACTTGGCACGCAAAGCTGCAGCTGCA------T-CG-TTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTCATCACA------------------T-GTTATGTATCTGAGTATGT--------AT--------GTATGT-----A----------------------------TGTATGTATT----T-TATATACGAGTTTTTCC---GCACA------------------------------------------------------------------------------------------------------------------------------------CACACAGACAG--TTCTTTGTGTGC---AGTA--AGTGCCAAC--TAGAAACGGAAAACTGAAAACTAGGTTATTGGCG--------CGCGAATCTCC-----AACTT--------------GCCACTGCCC-CCCTCA------------TT---------------------------------------------------------------------------------------------TTCTTCC-T--------TCTTCAC-------CGATTTTCCACTTGGCACGCAAAGCTGCAGCTGCA------C-CA-TTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTCATCACTTGGCGCAACTAGAAAACTT-GCTATGTA-CCATGTATAC--------AT--------A-----------CTTAT------------CCG----TGTATG----TATGTTTTTACATATACCAGTTTTTCCACTACATACAAA----C----------------------------------------------------------------------------------------------------------------------GCATATACAGAGATAG--TTCTTTGTGTGCA--AGTA--AGTGCAAAC--TAGAAACAGAAAACAGAAAACTGGGTTATTGGCG--------CGCGATTCTCC-----ATCTT---C--TATCCCTCTCTTCGCCTCTCCTTTC------------------------------------------------------GCCATCCACCTCCTTCGCCA---------------------------------C-------T--------CTTTTGCT------GCATTTTCCACTTGGCACGCGAAGCTGCAGCTGCA------T-CG-TTG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GTCATCACT------------------A-ACTATTTA-CCAACTACAT--------AC--------ATACAC-----A----------TA------------CATACA----TAAG------AAAAAA----------------ACATGAACATAC-------------------------------------------------------ATGCA----CATTATTTGTAGCTTTTTTTACTTCTTCTTCTTCT-TTTTTATTGCACAAACTCACGAACATAGTGGCAA--CGCTTTGTGTGCA--------AGTACAAAC--TAGAAACAGA-------AAACTAGGTTATTGGCG--------CGCGAATCTTC-----------CTCT-------------TTC-------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------TTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

GTCATCACT------------------AAGCTATTTA-CCAAGTAAAT--------AT--------GTACATACATA-CTTAC------------AAT----CAT------------------------------TTTCATTT---ATGCTTTATTTTAAAAATATTCATCTTTAGTTTTACTTTGATTTGAATTTAAAATAAAAGAAAAA---------C--AATTTGTA------TTTGCTTCTTCTTCAT----TTTT--TGCACAAACCTACGAACATAGTGGCAA--CGCTTTGTGTGCA--------AGCACAAAC--TAGAAACAGAA-------AACTGGGTTATTGGCG--------CGCGAATCTCC-----------CTCT-------------TT-------------------------------------------------------------------------------------------------------------------------------TTTTTTTC---------------------------------T---------ACTGCA--------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTCATCACTTTGCACATCTAGAAAACTT-GTTATACA-C-----ACAC--------ATGTACATATGTATAT----A-CTTAT------------ATGACTACATATG----TATG------TATTTACAAAAACAGCCGCTGCAC-----------------------------------------------------------------------------------------TTCTTGTTCTTTTCTCCTTTTTTTTCCA--AG-CAACACACAACTACAACGACAGCGTTTCTTGTATGCTTCGACG--AGTGCCAAC--TAGAAACAGAA-------AACTGGGTTATTGGCGCAAAT---------GCGCGCGCGAATCTTCATC-------------TCTC-----CCCCACTCC-------------------AC-------------TTCATTGA-----------------------------------------------------T---CACATTCTCCC-T--------TTCTTGCTGC------A-GTTCCACTTGGCACGCGAAGCTGCAGCAGCAGCCAAGT-TGTCTG

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

GTCATCACTTTGCACATCTAGAAAACTT-GTTATACA-C-----ACAC--------AT--------GTACATATATA-CTTAT------------ATG----CATATG----TATG------TCTTTACAAAAACAGCCGCTGCAC-----------------------------------------------------------------------------------------TTCTTGTTCTTTTCTCCTTT-TTTTCCA--AG-CAACACACAACTACAACGACAGCGTTTCTTGTATGCTTCGACG--AGTGCCAAC--TAGAAACAGAA-------AACTGGGTTATTGGCGCAAAT---------GCGCGCGCGAATCTTCATC-------------TCTCCCT-CCCCCACTCC-------------------AC-------------TTCATTGA-----------------------------------------------------T---CACATTCTCCC-T--------TTCTTGCTGC------A-GTTCCACTTGGCACGCGAAGCTGCAGCAGCAGCCAAGT-TGTCTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................................................................................CGACAGCGTTTCTTGTATG..............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1

droWil2

CATCT---------------------------------------ACATATGT----AT--------GTATGT-----A--------CATACCTATGTACGTATA--------CATT------------TTCGTTAGGCAAATGTGCATGCATATGT-------------------------------------------------------ATGTA----TA---------------------------------------------------------TGTATGTACAT--ATGTATGTATGTA--CGTACATTTGTCAATGCTGCCCGAGGAAAATAAGAAACT--------------------TGCAGACTTCTTGCGAAGCTTT-------------GGAATG--GCGTGTTTGC----TAAATTGTTAGATAAATTGCT-AATC--------------------------------------------------------AACTTTTTTTCACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------CATG-CTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................TTCGTTAGGCAAATGTGCATGCATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	6.00	12	0	9	0	3	0
................................................................................................................................TTCGTTAGGCAAATGTGCATGCATA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	3.50	7	0	7	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTT-------------GGAATG--GCGTGTTTGC----......................................................................................................................................................................................	24	4	3.25	13	0	4	0	9	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------C.......	26	2	2.50	5	0	5	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------CA......	29	2	2.50	5	0	5	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT-AATC--------------------------------------------------------AACTTTTTTTCACGGG-------------T......................................................................	25	2	2.00	4	0	4	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAAGAAACT--------------------TGCAGACTTCTTGCGAAGCT...........................................................................................................................................................................................................................	29	2	2.00	4	0	4	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------CA......	27	2	2.00	4	0	3	0	1	0
.................................................................................................................................TCGTTAGGCAAATGTGCATGCATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	2.00	4	0	4	0	0	0
......................................................................................................................................................................................................................................................................................................................ACATTTGTCAATGCTGCCCGAGGA...............................................................................................................................................................................................................................................................................	24	2	1.50	3	0	3	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------C.......	27	2	1.50	3	0	3	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TGCAGACTTCTTGCGAAGCTTT-------------GG..........................................................................................................................................................................................................	24	2	1.50	3	0	3	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAAGAAACT--------------------TGCAGACTTCTTGCGAAG.............................................................................................................................................................................................................................	27	2	1.50	3	0	3	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GACTTCTTGCGAAGCTTT-------------GGAATG--GCG.................................................................................................................................................................................................	27	2	1.50	3	0	1	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTT-------------GGAATG--GCGTGTTTGC----TA....................................................................................................................................................................................	26	4	1.25	5	0	0	0	5	0
............................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTT-------------GGAATG--GCGTGTT.............................................................................................................................................................................................	21	4	1.25	5	0	0	1	4	0
......................................................................................................................................................................................................................................................................................................................................................................................TCTTGCGAAGCTTT-------------GGAATG--GCGTG...............................................................................................................................................................................................	25	4	1.25	5	0	2	0	3	0
.................................................................................................................................................................................................................................................................................................................................................TAAGAAACT--------------------TGCAGACTTCTTGCGA...............................................................................................................................................................................................................................	25	2	1.00	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTTAGATAAATTGCT-AATC--------------------------------------------------------....................................................................................................	23	2	1.00	2	0	0	0	2	0
......................................................................................................................................................................................................................................................................................................................ACATTTGTCAATGCTGCCCGAGGAA..............................................................................................................................................................................................................................................................................	25	2	1.00	2	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------C.......	28	2	1.00	2	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TCTTGCGAAGCTTT-------------GGAATG--GCG.................................................................................................................................................................................................	23	4	1.00	4	0	0	0	4	0
.................................................................................................................................TCGTTAGGCAAATGTGCATGCATATGT-------------------------------------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................	28	2	1.00	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TGCAGACTTCTTGCGAAGCTTT-------------GGAA........................................................................................................................................................................................................	26	2	1.00	2	0	1	0	1	0
..........................................................................................................................................................................................................................................................................................................................TTGTCAATGCTGCCCGAGGAAAATAAG........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
................................................................................................................................TTCGTTAGGCAAATGTGCATGCATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TGC----TAAATTGTTAGATAAATTGCT-AA..............................................................................................................................................................	26	2	1.00	2	0	2	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGC----TAAATTGTTA............................................................................................................................................................................	18	2	1.00	2	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT-AATC--------------------------------------------------------AACTTTTTTTCACGGG-------------TTC....................................................................	27	2	0.50	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AATC--------------------------------------------------------AACTTTTTTTCACGGG-------------TTCT...................................................................	25	4	0.50	2	0	1	0	1	0
...........................................................................................................................................................................................................................................................................................................TATGTA--CGTACATTTGTCAATGCTGC......................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TGCAGACTTCTTGCGAAGCTTT-------------GGA.........................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------CC......	27	2	0.50	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGC----TAAATTGTTAGATA........................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0
.......................................................................T-----A--------CATACCTATGTACGTATA--------CATT------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0
..................................................................................................................................CGTTAGGCAAATGTGCATGCATATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TAAGAAACT--------------------TGCAGACTTCTTGCGAA..............................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTT-------------GGAATG--GCGTGTTTGC----T.....................................................................................................................................................................................	25	4	0.50	2	0	0	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACT----------------------------------C------GTAGCAGCA------CATG-CT.	22	2	0.50	1	0	0	0	1	0
....T---------------------------------------ACATATGT----AT--------GTATGT-----A--------CATACCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................G--GCGTGTTTGC----TAAATTGTTAGATAA.......................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------CA......	24	2	0.50	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAATTGCT-AATC--------------------------------------------------------AACTTTTT............................................................................................	23	2	0.50	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................AGACTTCTTGCGAAGCTTT-------------GGAATG--GC..................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGC----TAAATTGTTAGATA........................................................................................................................................................................	22	2	0.50	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGC----TAAATTGTTAGATAAAT.....................................................................................................................................................................	24	2	0.50	1	0	0	0	1	0
....................................................................................................TATA--------CATT------------TTCGTTAGGCAAATGTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0
................................................................................................................................TTCGTTAGGCAAATGTGCATGCATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
...................................................T----AT--------GTATGT-----A--------CATACCTATGTACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0
................................................................................................TACGTATA--------CATT------------TTCGTTAGGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	1	0
...................................................T----AT--------GTATGT-----A--------CATACCTATGTACGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------CA......	25	2	0.50	1	0	1	0	0	0
............................................................................................TATGTACGTATA--------CATT------------TTCGTTAGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0
.................................................................................................................................TCGTTAGGCAAATGTGCATGCATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTAGATAAATTGCT-A...............................................................................................................................................................	19	2	0.50	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................GACTTCTTGCGAAGCTTT-------------GGAATG--GC..................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................T--------------------TGCAGACTTCTTGCGAAGCTTT-------------GGAA........................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TGC----TAAATTGTTAGATAAATTGCT-AATC--------------------------------------------------------....................................................................................................	28	2	0.50	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................TA--CGTACATTTGTCAATGCTGCCCC...................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................ATG--GCGTGTTTGC----TAAATTGTTAGAT.........................................................................................................................................................................	26	2	0.50	1	0	0	0	1	0
..............................................................................................TGTACGTATA--------CATT------------TTCGTTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0
................................................................................................................CATT------------TTCGTTAGGCAAATGTGCATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTT-------------GGAATG--GCGTG...............................................................................................................................................................................................	19	4	0.50	2	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGC----TAAATTGTTAG...........................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACGGG-------------TTCTACT----------------------------------C------GTAGCAGCA------........	25	2	0.50	1	0	0	0	1	0
.....................................................................................................................................TAGGCAAATGTGCATGCATATGT-------------------------------------------------------ATGTA----.................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................ACTTCTTGCGAAGCTTT-------------GGAATG--G...................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGC----TAAATTGTTAGA..........................................................................................................................................................................	18	2	0.50	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................TAAGAAACT--------------------TGCAGACTTCTTGCGAAGC............................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TTCTTGCGAAGCTTT-------------GGAATG--GCG.................................................................................................................................................................................................	24	4	0.50	2	0	0	0	2	0
.................................................................................................................................TCGTTAGGCAAATGTGCATGCATATGT-------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TCTTGCGAAGCTTT-------------GGAATG--GCGTGT..............................................................................................................................................................................................	26	4	0.50	2	0	1	0	1	0
.....................................................................................................................................TAGGCAAATGTGCATGCATATGT-------------------------------------------------------ATG.......................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................TGTA--CGTACATTTGTCAATGCTGC......................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCACGGG-------------TTCTACT----------------------------------C------GTAGCA.................	25	3	0.33	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCACGGG-------------TTCTACT----------------------------------C------GTAGCAG................	27	3	0.33	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AATC--------------------------------------------------------AACTTTTTTTCACGGG-------------TTCTACT----------------------------------..............................	28	3	0.33	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................TATGTA--CGTACATTTGTCAATGCTG.......................................................................................................................................................................................................................................................................................	25	6	0.33	2	0	2	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AATC--------------------------------------------------------AACTTTTTTTCACGGG-------------TTCTACT----------------------------------C------.......................	29	3	0.33	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTCACGGG-------------TTCTACT----------------------------------C------GTAGC..................	25	3	0.33	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------------------------------------------------AACTTTTTTTCACGGG-------------TTCTACT----------------------------------C------GT.....................	28	3	0.33	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCGAAGCTTT-------------GGAATG--GCGTGTT.............................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TTGCGAAGCTTT-------------GGAATG--GCGTGT..............................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AATC--------------------------------------------------------AACTTTTTTTCACGGG-------------TTCTAC.................................................................	27	4	0.25	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GCGAAGCTTT-------------GGAATG--GCGTGTTTG...........................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TTGCGAAGCTTT-------------GGAATG--GCGTGTTTG...........................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACGGG-------------TTCTACT----------------------------------C------GTAGCAGC...............	24	4	0.25	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCGAAGCTTT-------------GGAATG--GCGTGTTTG...........................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTT-------------GGAATG--GCGTGTTTGC----G.....................................................................................................................................................................................	25	4	0.25	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................TCTTGCGAAGCTTT-------------GGAATG--G...................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--------------------------------------------------------AACTTTTTTTCACGGG-------------TTCTAC.................................................................	24	4	0.25	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTT-------------GGAATG--GCGTGT..............................................................................................................................................................................................	20	4	0.25	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................TCTTGCGAAGCTTT-------------GGAATG--GCGTGTT.............................................................................................................................................................................................	27	4	0.25	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCGAAGCTTT-------------GGAATG--GCGTGTTTGC----......................................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TGCGAAGCTTT-------------GGAATG--G...................................................................................................................................................................................................	18	4	0.25	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................TTCTTGCGAAGCTTT-------------GGAATG--GCGTG...............................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TTGCGAAGCTTT-------------GGAATG--GCGTGTT.............................................................................................................................................................................................	25	4	0.25	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................TATGTATGTA--CGTACATTTGTCAAT...........................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TTT-------------GGAATG--GCGTGTTTGC----TA....................................................................................................................................................................................	21	20	0.15	3	0	1	0	2	0
.............................................................................................................................................................................................................................................................................................................................................................................................AAGCTTT-------------GGAATG--GCGTGTTTG...........................................................................................................................................................................................	22	16	0.13	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCACGGG-------------TTCTACT----------------------------------C------GT.....................	21	9	0.11	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TTT-------------GGAATG--GCGTGTTTGC----TAAATT................................................................................................................................................................................	25	13	0.08	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................GCTTT-------------GGAATG--GCGTGTTTGC----TA....................................................................................................................................................................................	23	13	0.08	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................AAGCTTT-------------GGAATG--GCGTGTTTGC----TAAA..................................................................................................................................................................................	27	13	0.08	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................AGCTTT-------------GGAATG--GCGTGTTTGC----TAAAT.................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................T-------------GGAATG--GCGTGTTTGC----TAAATTGT..............................................................................................................................................................................	25	13	0.08	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................GCTTT-------------GGAATG--GCGTGTTTGC----TAAATT................................................................................................................................................................................	27	13	0.08	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................GCTTT-------------GGAATG--GCGTGTTTG...........................................................................................................................................................................................	20	16	0.06	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................CTTT-------------GGAATG--GCGTGTTTG...........................................................................................................................................................................................	19	16	0.06	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................AGCTTT-------------GGAATG--GCGTGT..............................................................................................................................................................................................	18	16	0.06	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................CTTT-------------GGAATG--GCGTGTTT............................................................................................................................................................................................	18	16	0.06	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................AGCTTT-------------GGAATG--GCGTGTTT............................................................................................................................................................................................	20	16	0.06	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................AGCTTT-------------GGAATG--GCGTGTTTG...........................................................................................................................................................................................	21	16	0.06	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................AGCTTT-------------GGAATG--GCGTGTT.............................................................................................................................................................................................	19	16	0.06	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTTTGC----TAAATTGTT.............................................................................................................................................................................	18	17	0.06	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TT-------------GGAATG--GCGTGTTTGC----TCC...................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TT-------------GGAATG--GCGTGTTTGC----TAAAT.................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TT-------------GGAATG--GCGTGTTTGC----T.....................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0

droVir3

CAC-----------------------------------------------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------CA--CACACAGACGAAGCT-TTTGTATGCG-CGCTA--AGTGCAAAC--TAGAAACCGA--------AACTGGGTTATTGGTGCAAATGCGCGCGCGTTT-----------TTTTTT-------------TTC------TTCAACCT-------------------GC-------------TTTG-------------------------------------------CCT---------GCC---TCTACTCCCCC-T--------TCCTACACGC--------TGTTAACTTTGCCTTC---------GTTAAG------T-AG-CTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................................GTTATTGGTGCAAATGCGCGC............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................C------TTCAACCT-------------------GC-------------TTTG-------------------------------------------CCT---------GC........................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CAGACGAAGCT-TTTGTATGCG-CGC........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................TTATTGGTGCAAATGCGT..............................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

TGCA---CA------------------T-GTTATTCA-C-----AT------------------------------------------------------------------------------------------------ACACACA------C----------------------------------------------------------------------------------------------------------------------ACTCACACAGAAGCAGAGCT-TTTGTATGCC-CGCTA--AGTGCAAAC--TAGAAACAGA--------AACTGGGTTATTGGTGCAAATGCGCGCGCGTTT-----------TTCTTTTT-------ATTTCTT-----CTACAACCT-------------------GC-------------TTTGGTCTTCTCGTTCTCTTTCTCACTGCATGGCCA------------------------------------------CCCC----TCTCTGCTGC------T-TATTAACTTCGCCTACGTTGCTC--------------T-TG-GTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ATGTGTATC------------------A-AT-------CTATGTATGT----ACATATGTAT----GTATGT-----A--------CATATGTATGTATGTACATATG----TATG------TATGTA---------------CATATG-----------------------------------------------------------------------TA---------------------------------------------------------TGTATGTACAT--ATGTATGTATGTA--CTTA--TGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_22505

2r:6224772-6224921 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads