ID:

dsi_22494

 Coordinate:

3l:5039993-5040142 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.4 -11.4 -11.3

Flybase annnotation

Antisense to CDS [3l_5040135_5059535_+]; Antisense to five_prime_UTR [3l_5039961_5040134_+]; Antisense to exon [3l_5039961_5059771_+]

No Repeatable elements found

Sense Strand Reads

CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAACGATCCCGTCATCGTAACCGTTTGTTCTCTTCGTGTGGGCGTGCGATGGAAATTTTGCTAATTTTGAGTTTGTTATTGTCCGTAATTTGATAACTGATAATTTTGTAATTTGACTAATTTGTTTCCTTTTTTTTTATTTTTTGTGTTGTTCCAGCGTATCGATGCTATCGAATTTCGATATATGTTGGTATTTTTTTGTACTTC
**************************************************************...(((.(((.((....((((((((.((((..((((((.....))))))....))))...))))))))....)).))).)))........************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 O001
Testis
 M053
female body
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
................ACCTTTTTTGGACTTGAGCT...................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................................................................TCGTGTGGGCGTGCGATGGAATT....................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................ACCTTTTTTGGACTTGAGC....................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................ACCGTTTGTTCTCTTCGT.......................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................TTTTGTGTTGTTCCAGCGT............................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................AGCTTCACACTGAACGATCGC..................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................TTTGATAACTGATAATTTTGT.................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................TGGACTTGAGCTTCACACTG.............................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................AGCTTTACACTGAACG.......................................................................................................................................................................................................... 16 1 4 1.00 4 4 0 0 0 0 0 0 0 0 0
.GTTGACAATGAATTGACCTTTT................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................TACTTGGATAACTGATAATTC..................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0
................................AGCTTTACACTGAACGTT........................................................................................................................................................................................................ 18 2 4 0.50 2 1 0 0 0 0 0 0 1 0 0
...........................ACTATAGCTTTACACTGAAC........................................................................................................................................................................................................... 20 3 5 0.40 2 1 1 0 0 0 0 0 0 0 0
................................................................................................................................TACTTGGATAACTGGTAATT...................................................................................................... 20 3 12 0.33 4 0 0 0 0 4 0 0 0 0 0
................................AGCTTCACACTGGACGCT........................................................................................................................................................................................................ 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
................................................................................................AATTTTGCGAACTTTGACTTTG.................................................................................................................................... 22 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0
..............................................CGATCCCGTCATCCT............................................................................................................................................................................................. 15 1 10 0.20 2 0 1 0 0 0 0 0 1 0 0
...........................................GTTCGATCCCGTCATC............................................................................................................................................................................................... 16 2 20 0.20 4 2 0 0 0 0 0 0 1 0 1
...............................................................................................................................................................................................................................ATGTATGATGGTATTTATTTGT..... 22 3 11 0.18 2 0 0 0 0 0 2 0 0 0 0
............................................ATCGATCCCGTCATC............................................................................................................................................................................................... 15 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0
...........................ACTATAGCTTGACACTGAAC........................................................................................................................................................................................................... 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
................................AGCTTCACACTGGAC........................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1
.........................TGACTAGAGATTCACACT............................................................................................................................................................................................................... 18 3 20 0.10 2 0 0 0 0 0 2 0 0 0 0
....................................................................................GCGTGCGTTGGAAAT....................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0
..............................................CGATCCCGTCATCTT............................................................................................................................................................................................. 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0
.................................GCTTTACACTGAACGTT........................................................................................................................................................................................................ 17 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0
................................AGCTTTACACTGAAC........................................................................................................................................................................................................... 15 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTTATTTTTTGTGTT......................................................... 15 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.........................................CGGTTCGATCCCGTCATCG.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

########################################################################################################################################################################################################################################------------------
GCAACTGTTACTTAACTGGAAAAAACCTGAACTCGAAGTGTGACTTGCTAGGGCAGTAGCATTGGCAAACAAGAGAAGCACACCCGCACGCTACCTTTAAAACGATTAAAACTCAAACAATAACAGGCATTAAACTATTGACTATTAAAACATTAAACTGATTAAACAAAGGAAAAAAAAATAAAAAACACAACAAGGTCGCATAGCTACGATAGCTTAAAGCTATATACAACCATAAAAAAACATGAAG
**************************************************************************************************...(((.(((.((....((((((((.((((..((((((.....))))))....))))...))))))))....)).))).)))........************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
.........................................................................................................TTAAAACTCAAACAATAACAGGCAT........................................................................................................................ 25 0 1 5.00 5 2 3 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CAGGCATTAAACTATTGACTATTA....................................................................................................... 24 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................CAATAACAGGCATTAAACTAT................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AACAATAACAGGCATTAAACT.................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TAAACTGATTAAACAAAGGAA............................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................TCAAACAATAACAGGCATTAAACTA................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................TCAAACAATAACAGGCATTAAACTAT................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................TCAAACAATAACAGGCATTA...................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................AATAACAGGCATTAAACTATT............................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ACACAACAAGGTCGCATA............................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................ATAGGGCAGTAGCATTGGCAAA..................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................ACAGGCATTAAACTATTGACT........................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................AAACACAACAAGGTCCCATA............................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................CTCAAACAATAACAGGCAT........................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................AAAACCTGAACTCGAAGTGTGACTT............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................GGGCAGTAGCATTGGCAAACAAGAGA.............................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................AACTCGAAGTGTGACTTGCTA........................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................CAAACAATAACAGGCATTA...................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TCAAACAATAACAGGCATTAAA.................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................AACCTGAACTCGAAGTGTGA............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................TTGACTATTAAAACATTAAAC............................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................ACCCGCCCGCTACCTTTA....................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................TTTAGGGCAGTAGCATTGGCAAA..................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................GTGTGACTTTCTAGGGCAGTA................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................CAGGCATTAAACTATTGACTATTAA...................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AAGAAGGTCGCGTAGCTACCA...................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................AAAAAAAACAAGGTCGCATA............................................. 20 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AGGAAAAAAAAATAAAAA............................................................... 18 0 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................AAGAGAAGGACACCCA.................................................................................................................................................................... 16 2 20 0.20 4 0 0 0 0 0 0 1 0 0 0 0 3
........................................TAACTAGCTAGGGCAGT................................................................................................................................................................................................. 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................AAGAGAAGGACACCC..................................................................................................................................................................... 15 1 14 0.14 2 0 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................AAAAAAAAATAAAAAACA............................................................ 18 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AGGAAAAAAAAATAA.................................................................. 15 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:5039943-5040192 - dsi_22494 CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GATCCCGTCATCGTAACCGTTTG---------TTC------------------------TCTTCGTGT-GG-GCGTGCGAT-------GG-------AAATT-TTGCTAATTTTGAGT-------------TTGTTATTGTCCGTAATTTGATAACTGATA-ATTTTGTA-------------------------------------------------------------ATTTGACTAATT--------TGTTTCCTTTTT---TT--T--T-----------------------ATTTTTTGTGTTGTTCCAGC--------GT-ATCGATGCTAT-----------------------CGAAT--------TTCGATATATG---TTGGTATTTTTTTGT---------------ACT-TC
droSec2 scaffold_2:5079384-5079633 - CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GATCCCGTCATCGTAACCGTTTG---------TTA------------------------TCTTCGTGA-GG-GCGTGCGAT-------CG-------AAATT-AGGCTAATTTTGAGT-------------TTGTTATTGTCCGTAATTTGATAACTGATA-ATTTTGTA-------------------------------------------------------------ATTTGACTAATT--------TGTTTCCTTTTT---TT--T--T-----------------------ATTTTTTGTGTTGTTCCAGC--------GT-ATCGATGCTAT-----------------------CGAAT--------TTCGATATATG---TTGGTATTTTTTCGT---------------ACT-TC
dm3 chr3L:5127304-5127548 - CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GAACCCGTCATTGTATCCGTTTG---------TTC------------------------TCTTCGTGT-GG-GCCTGCGAT-------GG-------AAATT-GGGCTAATTTTGAGT-------------TGGTTTTTGTGTGCAATTGGATAACTGATAAATTTTGTA-------------------------------------------------------------ATTTGACTAATT--------TGTTT----CTTTTTTT--T----------------------------TATTTGT-TTGTTACAGC--------GT-ATCGATGCTAT-----------------------CGAAT--------TTCGATATCTG---TTGGTATTTT-TTGT---------------GCT-TT
droEre2 scaffold_4784:7820242-7820478 - CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GATCCCGTCATGGTATCCGTTTG---------TTC------------------------TCTTCCTGT-GG-GCGTGTGTA-------TG-------GAATT-GGGCTAATCTTCAAG-------------ATGTTGATGCTCGCGATTCGGTAACTAAGA-ATTTAGTA-------------------------------------------------------------ATTTGACTAATT--------TGTTT----CTTT--TT--T----------------------------TATTTGTGTTATTACAGA--------GT-ATCGATGCTAT-----------------------CGAGT--------TTCGATATCGG---TTGGTATTTTT-----------------------TT
droYak3 3L:5688674-5688913 - CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GAACCCGTCATCGTATCCGTTTG---------TTC------------------------TCTTCCTGT-GC-GCGTGTGAA-------TG-------AAATT-GGGCTAATTTTGAGT-------------TTGATGGTGTCCGCTATTTGATAACTAATA-ATTTTGTA-------------------------------------------------------------ATTTGACTAATT--------TGTTT----CTTTT-TT--T----------------------------TATTTGTGTTGTTACAGA--------GT-ATCGACGCTAT-----------------------CGAAT--------TTCGATAGCTG---TTGGTATTTC--------------------GAT-TA
droEug1 scf7180000409466:2884755-2884943 - CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTGACACTGAAT---GATCCCGTCATTGTTTTTGCTAA---------ATC------------------------TCTTCCTGT-AG-GTATGTGAG-------TG-------GGTAT-GGACTAACTTTGAAT-------------TTGGCTTTGACCGTGATTCACTAACTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTTCTTTATTCCT---------------ATATGTATT----------------------------TA---T-----------------------------------------------------------------------------------------------------------------GTT
droBia1 scf7180000302428:1856289-1856481 + CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GAACCCGTCATCGTGCACGCTTG---------ATC------------------------TCCGCCTG--GG-GTGTTTGGT-------GG-------GGCTT-TGCCTGATTTCGAAT-------------TCTATAATGACCACGATTCGCTGAGTTATATATTGTCTA-------------------------------------------------------------ATTTGGGTTTCTTTTTTCCT---------------ATATGTATAA-----------------------TTTTTC---T-----------------------------------------------------------------------------------------------------------------TTT
droTak1 scf7180000415157:273698-273896 - CATTGACAATGAATTGACCTTTTTTCGATTTCAGCTTCACACTAAAC---GAACCCGTCATTTTTC--GATTA---------TAC------------------------TCCTCCTGC-GG-GCGGCTGGGCAGTGGTTG-------GGCGT-TGCCTAATTCTGG------------TGTTTTATTGCGACCGAAATGGGCTAGCTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTTCTTT-TTCCT---------------ATATGTATTT-----TTTTGT---------------------T-----------------------------------------------------------------------------------------------------------------GTT
droEle1 scf7180000491268:574343-574577 - CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAA---GATCCCGTCATTGTTCGAGTTCA---------AAC------------------------TCCTCCTGC-GG-GTGTATGTG-------TG-------GGTGT-GGACAAA-----AAT-------------TTTATACTGACTCTGATTCGATAACTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTCCTTTTTTCGT---------------ATATGTATTT-----TTTTATTGTTTAA----------------TTAGAGATGGAATTTATGA------------------------------------------------CGAT--TAA---TCGATATTTT-TTGT---------------G---TT
droRho1 scf7180000765557:41076-41265 + CGTTTACAATGAATTGACCTTTTTTGGCCTTGAGCTTCACACTGAAT---GAACCCGTCATTGTTCCAGTTTA---------TTC------------------------TTCTCCTGC-GG-GTGTATGTA-------TG-------GGT-----GTGCACTTAGAAT-------------TTTATACTGACTGCGATTCGATAACTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTCCTTTTTCCCT---------------ATATGTATTT-----TTTTAT---------------------T-----------------------------------------------------------------------------------------------------------------GTT
droFic1 scf7180000453833:292014-292298 + CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAT---GATCCCGTCATGTTTTTC----A---------AAG------------------------TCCTCTTGT-GT-GTTGGTGTG-------TG-----------G-GTGTGTATTTTGAGTTTCACTTTAGAATTTTATATTGGCTGTGATTCGATAACTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTCTTTT-TTCC-----------TC----T-------------------------------TTTTTCTTTCGATATAAT--------AT-TT---------AAGAATCGATAACATGGTGTTACCGGACCATCTAATTT--ACGTCTGGAAGTGGCAACTTTGTGTTTAAACAGCGCCAAAACC-TT
droKik1 scf7180000302274:566368-566428 - CTTTGACAATGAATTGACCTTTTTTCGACTTGAGTTTCACACTGAAC---GATCCAGTCATTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:13409878-13410143 + CGCTGACAATAAATTGACCTTTTTTGGATTTTAGTTTTACACTGAAA---GAACCCGTCATTGTTCAAGGCTG-CTG----GGGCGCTCCTGTTCTTTTGTTAAGA---TG--TATGT-GT-GAGTGCAGG-------TG-------GGTGT-GGGTGTGTTTCGAAT-------------T-TGGACTGACTGCGATTTGGTAACTTATATATTGTCTA-------------------------------------------------------------AAAA--------TTTTTTCT---------------ATATGTATTACTTTTTCTTGTTGTTTAATTCAGTTGTTGTTTTATTTTAGT--------GTGACC-----AGT-----------------------TGCGT--------TCCAAGATATA-------------------------------------TT
droBip1 scf7180000396589:604698-604949 - CACTGACAATAAATTGACCTTTTTTGGATTTTAGTTTTACACTGAAA---GAACCCGTCATTGTTCTAGACTG-CTG----GGGCGCTCCTGCTCTTTAGCTAAGG---TG--ACTGT-GT-GAGTGCGGG-------TG-------GGTGT-GGGTGTACTTCGAAT-------------T-TGGACTGACTGTGATTTGGTAACTTATATATTGTCTA-------------------------------------------------------------AAAT---------TTTTCCT---------------ATATGTATTACTTTTTCTTGT---TTTATTCAGTTGTTGTTTTATTTTAGT--------GTGACCAATGGTTT-----------------------CGA------------------------------------------------------------
dp5 XR_group3a:1242597-1242821 - CTTTGACAATGAATTGACCTTTTTTCGATTTCAGCTTCACACTGAAT---GAACCAGTCATTTTACTGATCGG-C--------T---------------TTTAACA---CAG--ACGTAAAG-AGGACAGA-------TTGGTATGA---TGGGGGCAATTTTTGTAT-------------TTTGGATTGACTGGAGT-TTATAAGTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTTTT--------T----CCTTCTT---TT--T--T-----------------------ATTGCTTTTTTTGTTTAATC--------GC-TTCGGTGTTGC-----------------------CAGAT----------------------------------------------------------
droPer2 scaffold_23:1264054-1264278 - CTTTGACAATGAATTGACCTTTTTTCGATTTCAGCTTCACACTGAAT---GAACCAGTCATTTTACTGATCGG-C--------T---------------TTTAACA---CAG--ACGTAAAG-AGGACAGA-------TTGGTATGA---TGGGGGCAATTTTTGTAT-------------TTTGGATTGACTGGAGT-TTATAAGTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTTTT--------T----CCTTCTT---TT--T--T-----------------------ATTGCTTTTTTTGTTTAATC--------GC-TTCGGTGTTGC-----------------------CAGAT----------------------------------------------------------
droWil2 scf2_1100000004540:199799-199859 - CGCTAACGATAAATTGACCCTTTTTTGATTTAAGTTTCACACTGAACGTTGAACCAGTCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:7846943-7847147 - CATTGACAATGAATTGACCTTTTTTCGATTTTAGCTTCACACTGAAC---GAACCAGTCATATTTCTAATTTAAA-CTTTA-T-A--------------------TCTGTTTGCCGA--AAAATTTTTT-------------------------------------------------------------TTTGGGATTTTATAATTT---------------TCTCAATTTTAAGTAGTTGGAATTTTGACTTGATTTGGTCAAGTGTGTTTATTGTCTAATATTT--TTTA--------T----CGTTCTT---TT-------------GCTT------------ATTG----------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:11499849-11500067 - CATTAACAATGAATTGACCTTTCTTCGTTTTTAGCTTTACACTAAAT---GATCCAGTCATTATTATGATTCGAG-GTTTG-TTT------------------------TTTGCCGA--AAATTGATTGCG--------T--------------------------------------------------------------------GGT-ATTTTATAAATTCTCAATTTTGAGGTTTTGGAATTATGCCCTGATTTGGTTAAGAGTGTTTATTGTCTAATAACTTTTATTTTTA----T----CGTTCTT---TT-------------GCTTATTGTTTAA----------------TGCGAGC------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:6899785-6899842 - CATTTACAATGAATTGACCTTTTTTCGATTTTAGCTTCACACTGAAC---GAACCAGTCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GATCCCGTCATCGTAACCGTTTG---------TTC------------------------TCTTCGTGT-GG-GCGTGCGAT-------GG-------AAATT-TTGCTAATTTTGAGT-------------TTGTTATTGTCCGTAATTTGATAACTGATA-ATTTTGTA-------------------------------------------------------------ATTTGACTAATT--------TGTTTCCTTTTT---TT--T--T-----------------------ATTTTTTGTGTTGTTCCAGC--------GT-ATCGATGCTAT-----------------------CGAAT--------TTCGATATATG---TTGGTATTTTTTTGT---------------ACT-TCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................ACCTTTTTTGGACTTGAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000002000000000
................ACCTTTTTTGGACTTGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.................................................................ACCGTTTG---------TTC------------------------TCTTCGT.......................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTTTGTGTTGTTCCAGC--------GT-.................................................................................................1911.00100001000000000000
.....................................................................................................................................................................................................TTTGATAACTGATA-ATTTTGT................................................................................................................................................................................................................................................................2111.00100000000001000000
........................TGGACTTGAGCTTCACACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000100000000
.GTTGACAATGAATTGACCTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................T--T--T-----------------------ATTTTTTGTGTT....................................................................................................................15200.05100000010000000000
droSec2
CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GATCCCGTCATCGTAACCGTTTG---------TTA------------------------TCTTCGTGA-GG-GCGTGCGAT-------CG-------AAATT-AGGCTAATTTTGAGT-------------TTGTTATTGTCCGTAATTTGATAACTGATA-ATTTTGTA-------------------------------------------------------------ATTTGACTAATT--------TGTTTCCTTTTT---TT--T--T-----------------------ATTTTTTGTGTTGTTCCAGC--------GT-ATCGATGCTAT-----------------------CGAAT--------TTCGATATATG---TTGGTATTTTTTCGT---------------ACT-TCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................GTTTG---------TTA------------------------TCTTCGTGA-GG-GC...............................................................................................................................................................................................................................................................................................................................................................2111.0010100
dm3
CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GAACCCGTCATTGTATCCGTTTG---------TTC------------------------TCTTCGTGT-GG-GCCTGCGAT-------GG-------AAATT-GGGCTAATTTTGAGT-------------TGGTTTTTGTGTGCAATTGGATAACTGATAAATTTTGTA-------------------------------------------------------------ATTTGACTAATT--------TGTTT----CTTTTTTT--T----------------------------TATTTGT-TTGTTACAGC--------GT-ATCGATGCTAT-----------------------CGAAT--------TTCGATATCTG---TTGGTATTTT-TTGT---------------GCT-TTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................TT-GGGCTAATTTTGAGT-------------TGGT..................................................................................................................................................................................................................................................................................................2119.0090000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000020000000000000010000000010000000000000000000000000000000000000010100000000000000000000000000000000001000000000000000
....................................................................GTTTG---------TTC------------------------TCTTCGTGT-GG-GC...............................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000002000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................TCGTGT-GG-GCCTGCGAT-------GG-------AA......................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTTTGGACTTGAGCTTCACAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TACAGC--------GT-ATCGATGCTAT-----------------------CG.............................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAT--------TTCGATATCTG---TTGGTAT.............................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................TTTGAGT-------------TGGTTTTTGTGTGC........................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................TCTTCGTGT-GG-GCCTGCGAT-------G................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTTGGACTTGAGCTTCACACT................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTCACACTGAAC---GAACCCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
....................................................ACCCGTCATTGTATCCGTTTG---------.........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TCGTGT-GG-GCCTGCGAT-------GG-------AAA.....................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTGGACTTGAGCTTCACACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000
.......................................................................................................................................................................T-------------TGGTTTTTGTGTGCAATTGG..................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ATT-GGGCTAATTTTGAGT-------------TGG...................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................TACAGC--------GT-ATCGATGCTAT-----------------------CGAAT--------..................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..............................................C---GAACCCGTCATTGTATCCGTT....................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TAATTTTGAGT-------------TGGTTTTTGT............................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GGTTTTTGTGTGCAATTGGAT................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................G---------TTC------------------------TCTTCGTGT-GG-GC...............................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AATT-GGGCTAATTTTGAGT-------------TGG...................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TTGT-TTGTTACAGC--------GT-ATCGA............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................T-GG-GCCTGCGAT-------GG-------AAATT-GG................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................TTGAGT-------------TGGTTTTTGTGTGC........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CACTGAAC---GAACCCGTCATTG............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CTTCGTGT-GG-GCCTGCGAT-------GG-------........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................................CATTGTATCCGTTTG---------TTC------------------------TCT...........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................ATAACTGATAAATTTTGTA-------------------------------------------------------------ATTTGA............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TTCGTGT-GG-GCCTGCGAT-------GG-------........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................CGTTTG---------TTC------------------------TCTTCGTGT-GG-GCCTG............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................CTGCGAT-------GG-------AAATT-GGGCTAAA..........................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TTG---------TTC------------------------TCTTCGTGT-GG-GCCT.............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................GATAACTGATAAATTTTGTA-------------------------------------------------------------AA................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................ACTTGAGCTTCACACTGAAC---G........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TTCGTGT-GG-GCCTGCGAT-------GG-------AA......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................TACAGC--------GT-ATCGATGCTAT-----------------------CGAAT--------TTC...............................................2711.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GAATTGACCTTTTTTGGACTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................ACACTGAAC---GAACCCGTCATT.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TC------------------------TCTTCGTGT-GG-GCCTGCGAT-------GG-------........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ACTGATAAATTTTGTA-------------------------------------------------------------ATTTG.............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................T-TTGTTACAGC--------GT-ATCGATGCTAT-----------------------CGAA...........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................GGTTTTTGTGTGCAATTGG..................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................................AT-------GG-------AAATT-GGGCTAATTTTG......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................TGAGCTTCACACTGAAC---GAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTC------------------------TCTTCGTGT-GG-GCCTG............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................TG---------TTC------------------------TCTTCGTGT-GG-GCCTG............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TGTGTGCAATTGGATAACTG...........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GTTTG---------TTC------------------------TCTTCGTGT-GG-GCC..............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTTGT-TTGTTACAGC--------GT-ATCGA............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................TTG---------TTC------------------------TCTTCGTGT-GG-GC...............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTTGT-TTGTTACAGC--------GT-ATCG.............................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TGAGCTTCACACTGAAC---GAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TTCGTGT-GG-GCCTGCGAT-------GG-------A.......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................CCGTTTG---------TTC------------------------TCTTCGTGT-GG-.................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CGTGT-GG-GCCTGCGAT-------GG-------AAAT....................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GTGTGCAATTGGATAACTGAT.........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTG---TTGGTATTTT-TTGT---------------T.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................TTCGTGT-GG-GCCTGCGAT-------GG-------AAA.....................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................TTTGTGTGCAATTGGATAACT............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................................................................................................................................................................TTGTGTGCAATTGGATAACTG...........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TAATT--------TGTTT----CTTTTTTT--T----------------------------TA............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CGTGT-GG-GCCTGCGAT-------GG-------TT......................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GTTTG---------TTC------------------------TCTTCGTGT-GT-TA...............................................................................................................................................................................................................................................................................................................................................................2140.2510000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GATCCCGTCATGGTATCCGTTTG---------TTC------------------------TCTTCCTGT-GG-GCGTGTGTA-------TG-------GAATT-GGGCTAATCTTCAAG-------------ATGTTGATGCTCGCGATTCGGTAACTAAGA-ATTTAGTA-------------------------------------------------------------ATTTGACTAATT--------TGTTT----CTTT--TT--T----------------------------TATTTGTGTTATTACAGA--------GT-ATCGATGCTAT-----------------------CGAGT--------TTCGATATCGG---TTGGTATTTTT-----------------------TTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................CACTGAAC---GATCCCGTCATGG............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
droYak3
CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GAACCCGTCATCGTATCCGTTTG---------TTC------------------------TCTTCCTGT-GC-GCGTGTGAA-------TG-------AAATT-GGGCTAATTTTGAGT-------------TTGATGGTGTCCGCTATTTGATAACTAATA-ATTTTGTA-------------------------------------------------------------ATTTGACTAATT--------TGTTT----CTTTT-TT--T----------------------------TATTTGTGTTGTTACAGA--------GT-ATCGACGCTAT-----------------------CGAAT--------TTCGATAGCTG---TTGGTATTTC--------------------GAT-TASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................GGCTAATTTTGAGT-------------TTGATT................................................................................................................................................................................................................................................................................................2011.00100000100000
.................................................................................................................CCTGT-GC-GCGTGTGAA-------TG-------AAATT-GGGCTA............................................................................................................................................................................................................................................................................................................................2911.00100000010000
droEug1
CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTGACACTGAAT---GATCCCGTCATTGTTTTTGCTAA---------ATC------------------------TCTTCCTGT-AG-GTATGTGAG-------TG-------GGTAT-GGACTAACTTTGAAT-------------TTGGCTTTGACCGTGATTCACTAACTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTTCTTTATTCCT---------------ATATGTATT----------------------------TA---T-----------------------------------------------------------------------------------------------------------------GTTSizeHit CountTotal NormTotal
No Reads
droBia1
CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAC---GAACCCGTCATCGTGCACGCTTG---------ATC------------------------TCCGCCTG--GG-GTGTTTGGT-------GG-------GGCTT-TGCCTGATTTCGAAT-------------TCTATAATGACCACGATTCGCTGAGTTATATATTGTCTA-------------------------------------------------------------ATTTGGGTTTCTTTTTTCCT---------------ATATGTATAA-----------------------TTTTTC---T-----------------------------------------------------------------------------------------------------------------TTTSizeHit CountTotal NormTotal
No Reads
droTak1
CATTGACAATGAATTGACCTTTTTTCGATTTCAGCTTCACACTAAAC---GAACCCGTCATTTTTC--GATTA---------TAC------------------------TCCTCCTGC-GG-GCGGCTGGGCAGTGGTTG-------GGCGT-TGCCTAATTCTGG------------TGTTTTATTGCGACCGAAATGGGCTAGCTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTTCTTT-TTCCT---------------ATATGTATTT-----TTTTGT---------------------T-----------------------------------------------------------------------------------------------------------------GTTSizeHit CountTotal NormTotal
No Reads
droEle1
CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAA---GATCCCGTCATTGTTCGAGTTCA---------AAC------------------------TCCTCCTGC-GG-GTGTATGTG-------TG-------GGTGT-GGACAAA-----AAT-------------TTTATACTGACTCTGATTCGATAACTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTCCTTTTTTCGT---------------ATATGTATTT-----TTTTATTGTTTAA----------------TTAGAGATGGAATTTATGA------------------------------------------------CGAT--TAA---TCGATATTTT-TTGT---------------G---TTSizeHit CountTotal NormTotal
No Reads
droRho1
CGTTTACAATGAATTGACCTTTTTTGGCCTTGAGCTTCACACTGAAT---GAACCCGTCATTGTTCCAGTTTA---------TTC------------------------TTCTCCTGC-GG-GTGTATGTA-------TG-------GGT-----GTGCACTTAGAAT-------------TTTATACTGACTGCGATTCGATAACTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTCCTTTTTCCCT---------------ATATGTATTT-----TTTTAT---------------------T-----------------------------------------------------------------------------------------------------------------GTTSizeHit CountTotal NormTotal
No Reads
droFic1
CGTTGACAATGAATTGACCTTTTTTGGACTTGAGCTTCACACTGAAT---GATCCCGTCATGTTTTTC----A---------AAG------------------------TCCTCTTGT-GT-GTTGGTGTG-------TG-----------G-GTGTGTATTTTGAGTTTCACTTTAGAATTTTATATTGGCTGTGATTCGATAACTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTCTTTT-TTCC-----------TC----T-------------------------------TTTTTCTTTCGATATAAT--------AT-TT---------AAGAATCGATAACATGGTGTTACCGGACCATCTAATTT--ACGTCTGGAAGTGGCAACTTTGTGTTTAAACAGCGCCAAAACC-TTSizeHit CountTotal NormTotal
No Reads
droKik1
CTTTGACAATGAATTGACCTTTTTTCGACTTGAGTTTCACACTGAAC---GATCCAGTCATTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CGCTGACAATAAATTGACCTTTTTTGGATTTTAGTTTTACACTGAAA---GAACCCGTCATTGTTCAAGGCTG-CTG----GGGCGCTCCTGTTCTTTTGTTAAGA---TG--TATGT-GT-GAGTGCAGG-------TG-------GGTGT-GGGTGTGTTTCGAAT-------------T-TGGACTGACTGCGATTTGGTAACTTATATATTGTCTA-------------------------------------------------------------AAAA--------TTTTTTCT---------------ATATGTATTACTTTTTCTTGTTGTTTAATTCAGTTGTTGTTTTATTTTAGT--------GTGACC-----AGT-----------------------TGCGT--------TCCAAGATATA-------------------------------------TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................ATTGTTCAAGGCTG-CTG----GG........................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
CACTGACAATAAATTGACCTTTTTTGGATTTTAGTTTTACACTGAAA---GAACCCGTCATTGTTCTAGACTG-CTG----GGGCGCTCCTGCTCTTTAGCTAAGG---TG--ACTGT-GT-GAGTGCGGG-------TG-------GGTGT-GGGTGTACTTCGAAT-------------T-TGGACTGACTGTGATTTGGTAACTTATATATTGTCTA-------------------------------------------------------------AAAT---------TTTTCCT---------------ATATGTATTACTTTTTCTTGT---TTTATTCAGTTGTTGTTTTATTTTAGT--------GTGACCAATGGTTT-----------------------CGA------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CTTTGACAATGAATTGACCTTTTTTCGATTTCAGCTTCACACTGAAT---GAACCAGTCATTTTACTGATCGG-C--------T---------------TTTAACA---CAG--ACGTAAAG-AGGACAGA-------TTGGTATGA---TGGGGGCAATTTTTGTAT-------------TTTGGATTGACTGGAGT-TTATAAGTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTTTT--------T----CCTTCTT---TT--T--T-----------------------ATTGCTTTTTTTGTTTAATC--------GC-TTCGGTGTTGC-----------------------CAGAT----------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTTTGACAATGAATTGACCTTTTTTCGATTTCAGCTTCACACTGAAT---GAACCAGTCATTTTACTGATCGG-C--------T---------------TTTAACA---CAG--ACGTAAAG-AGGACAGA-------TTGGTATGA---TGGGGGCAATTTTTGTAT-------------TTTGGATTGACTGGAGT-TTATAAGTTATATATTGTCTA-------------------------------------------------------------ATTTGGTTTTTT--------T----CCTTCTT---TT--T--T-----------------------ATTGCTTTTTTTGTTTAATC--------GC-TTCGGTGTTGC-----------------------CAGAT----------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CGCTAACGATAAATTGACCCTTTTTTGATTTAAGTTTCACACTGAACGTTGAACCAGTCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CATTGACAATGAATTGACCTTTTTTCGATTTTAGCTTCACACTGAAC---GAACCAGTCATATTTCTAATTTAAA-CTTTA-T-A--------------------TCTGTTTGCCGA--AAAATTTTTT-------------------------------------------------------------TTTGGGATTTTATAATTT---------------TCTCAATTTTAAGTAGTTGGAATTTTGACTTGATTTGGTCAAGTGTGTTTATTGTCTAATATTT--TTTA--------T----CGTTCTT---TT-------------GCTT------------ATTG----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................TA-T-A--------------------TCTGTTTGCCGA--AAAAT...............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.ATTGACAATGAATTGACCTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000100000000000000000000000000000000000000000000000000000000
.......................TTCGATTTTAGCTTCACACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
CATTAACAATGAATTGACCTTTCTTCGTTTTTAGCTTTACACTAAAT---GATCCAGTCATTATTATGATTCGAG-GTTTG-TTT------------------------TTTGCCGA--AAATTGATTGCG--------T--------------------------------------------------------------------GGT-ATTTTATAAATTCTCAATTTTGAGGTTTTGGAATTATGCCCTGATTTGGTTAAGAGTGTTTATTGTCTAATAACTTTTATTTTTA----T----CGTTCTT---TT-------------GCTTATTGTTTAA----------------TGCGAGC------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CATTTACAATGAATTGACCTTTTTTCGATTTTAGCTTCACACTGAAC---GAACCAGTCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:29 PM