ID:

dsi_22492

 Coordinate:

3r:4405524-4405673 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TATGGAAAATGACACTGCCAAATTCGATTCCCAGATGAAAAGAGTTATGTACTTTGGGATCCCCAATGTGTGAAGCTATTGAAGAAAATTGGCATAGGTATAAAAAGCAGACATATAGCGATAAGAAGCGGCGATAAGATAGGTCTCCGTGCACGTTTTAAAACTGAAGTGTTAACTAATCACCATCACTTTCCCCGCAGCCAACGACTTGCAGCGCACTAAACTGACCTACGAGAGTCGCGCCAATCTG
**************************************************.....((((......(((.((((.((((...........))))..............(((......((((.......((((.(((.......))).))))...))))......))).(((....)))..))))))).....)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................................................................................TGAACTGTCAACTGATCACCATC............................................................... 23 3 1 4.00 4 4 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGAACTGTCAACTGATCACCAT................................................................ 22 3 1 4.00 4 2 0 0 0 1 1 0 0 0
.........................................................................................................................................GATAGGTCTCTGTGCAGGGTTTA.......................................................................................... 23 3 3 1.67 5 0 5 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AACGACTTGCAGCGCACTA............................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................TAAACTGACCTACGAGAGTCGCGCCA..... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................TACGAGAGTCGCGCCAATCTG 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................GACCTACGAGAGTCGCGCCAATCTG 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................TAGGTCTCTGTGCAGGTTTT........................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TCGGAGCCAACGACTTGCAGC................................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................ATAGGTCTCTGTGCAGGTTTA........................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................GATAGGTCTCTGTGCAGGTAT............................................................................................ 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................ATAGGTCTCTGTGCAGGTTT............................................................................................ 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GCCAACGACCTGTAGCG.................................. 17 2 3 0.33 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................ATAGGTCTCTGTGCAGGATTT........................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0
...........................TACCCAGATGAAAAGA............................................................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................TTTTGAAACTGAAGTG............................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 0 0 1
.......................................................................TAAGCTATTGAAGAAGAT................................................................................................................................................................. 18 2 10 0.10 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................TAAGAAGCGGCGTTAAA................................................................................................................ 17 2 14 0.07 1 0 0 0 0 0 0 0 0 1
.......................................................................TAAGCTATTGAAGAAGA.................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

ATACCTTTTACTGTGACGGTTTAAGCTAAGGGTCTACTTTTCTCAATACATGAAACCCTAGGGGTTACACACTTCGATAACTTCTTTTAACCGTATCCATATTTTTCGTCTGTATATCGCTATTCTTCGCCGCTATTCTATCCAGAGGCACGTGCAAAATTTTGACTTCACAATTGATTAGTGGTAGTGAAAGGGGCGTCGGTTGCTGAACGTCGCGTGATTTGACTGGATGCTCTCAGCGCGGTTAGAC
**************************************************.....((((......(((.((((.((((...........))))..............(((......((((.......((((.(((.......))).))))...))))......))).(((....)))..))))))).....)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR902008
ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
.........................................................................................................................................ATATCCAGAGGCACGTGCAAAATTT........................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................GGATGCTCTCAGCGCGGTTAGAC 23 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................CAGAGGCACGTGCAAAATTTT....................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................................TCGCGTGATTTGGCTGGATGC................. 21 1 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................GGCACGTCCAAAAATTTG...................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................TGAAGGGGGCCTCGGTT.............................................. 17 2 20 0.10 2 0 0 0 0 0 2 0
........................................................CCTAGCGCTTACACACT................................................................................................................................................................................. 17 2 17 0.06 1 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................GGTTGACTCGATGCTCTC............. 18 3 20 0.05 1 0 0 0 0 0 0 1
...........................................................................................................................................................................................................TGCTGAGCGTCGAGTG............................... 16 2 20 0.05 1 0 0 0 0 1 0 0

Generated: 04/24/2015 at 05:47 AM