ID:

dsi_22482

Coordinate:

3r:17645266-17645423 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCGTGGATAGTTTGCCCAATCCCTACGACAAGGAGGCACTCAAATTCAAGGTGAGTTGCTGAATTAAGCAAAATATTAAACTTTCATTTAAAGTTCGCCTGCACCGCTTAACAGGCAGGAGTCCCCTGGCCATGAAAAGCTTTCTTAACTACCCAAAAAAGATTTCTTCAAGCACGGTAATCTAATAATATTATTATTCCATCTACAGAAGGGCGACCTTATCGATGTGCTGTCGATGAACGCCTCGGGCATTTGGAA ************************************************.....(((((......)))))(((((((((((((.....)))))).(((((..........))))).(((((.....(((........)))......))).))......(((((.((........)).)))))..)))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M024 male body	SRR553485 Chicharo_3 day-old ovaries
................................................................................................................................................................................................................................ATGTGCTGTCGATGAACGCCT.............	21	0	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................TGTGCTGTCGATGAACGCCTCGGGCATT.....	28	0	1	1.00	1	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................TGAAAGCCTCGGTCATTTGG..	20	2	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CGATGAACGCCTCGGCCG.......	18	2	7	0.14	1	1	0	0	0	0	0	0
...........................ACAAGGAGGAACCCAAATTT...................................................................................................................................................................................................................	20	3	9	0.11	1	0	0	0	0	1	0	0
...................................................................................................................................................ACTACCCAAACAAGA................................................................................................	15	1	9	0.11	1	0	0	0	1	0	0	0
.................AATCACTACCACAAGGA................................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	1
.............................................................................................................ATCAGGTAGGAGTACCCT...................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1	0

Anti-sense strand reads

AGCACCTATCAAACGGGTTAGGGATGCTGTTCCTCCGTGAGTTTAAGTTCCACTCAACGACTTAATTCGTTTTATAATTTGAAAGTAAATTTCAAGCGGACGTGGCGAATTGTCCGTCCTCAGGGGACCGGTACTTTTCGAAAGAATTGATGGGTTTTTTCTAAAGAAGTTCGTGCCATTAGATTATTATAATAATAAGGTAGATGTCTTCCCGCTGGAATAGCTACACGACAGCTACTTGCGGAGCCCGTAAACCTT ************************************************.....(((((......)))))(((((((((((((.....)))))).(((((..........))))).(((((.....(((........)))......))).))......(((((.((........)).)))))..)))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	M023 head
......................................................................................................................................................................................................GGTAGATGTCATACTGCTGGAAT.....................................	23	3	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................ACATTATTATAATAATAAGGTTGAGGTCT.................................................	29	3	1	1.00	1	1	0	0	0	0	0	0
.......................ATGCTGTTCCTCCAGGACTTTA.....................................................................................................................................................................................................................	22	3	4	0.25	1	0	0	1	0	0	0	0
............................................................................................CAAGCGGTCGTGGCGA......................................................................................................................................................	16	1	5	0.20	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................ACAGCTACTGGCGGAG............	16	1	8	0.13	1	0	0	0	0	1	0	0
..........................................................................................................................GGGGACCGGGACTTT.........................................................................................................................	15	1	10	0.10	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................CCGCTGGAATAGCTACATCT...........................	20	3	11	0.09	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................TATAATAATAGGCTAGAAGT...................................................	20	3	15	0.07	1	0	0	1	0	0	0	0
...........................................................................................................................................................TTTTTCTAAAGAAGTG.......................................................................................	16	1	15	0.07	1	0	0	1	0	0	0	0
..................................................................................................................................................................................TCAGATTATTAGAATAAGAA............................................................	20	3	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 12:45 AM