ID:

dsi_22468

 Coordinate:

3l:11422255-11422379 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTGGCGGCCCTTCGTTTACGGCGGAGTCGCCTCAATCACGGCGGAATTTGGTAAACAACAAGTACATAGCAGGGCGTACAGCACGCCACGCCCCCTAACTGGGACGTCGGCTATATGCACTGGTAGCTGCTATCGCTGCGATCGAATCTTTGTAAACAAATTCTATTCATTGCAGGCACCTTTCCTATCGACACGACGAAGACGCGCCTCCAAATCCAAGGTCAG
**************************************************..........((((..((.(((.(((((.(((.((..(((.(((......))).)))))))).))))).))).))..))))....(((((((.((((.((((....))))....)))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
............................................................................................................................................................................................CGACACGACGAAGACGCGCCT................ 21 0 1 4.00 4 4 0 0 0 0 0
.................................................................................................................................................................TCTATTCATTGCAGGCACCCT........................................... 21 1 1 2.00 2 2 0 0 0 0 0
......................................................................................................................................................................................TCCTATCGACACGACGAAGACGC.................... 23 0 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................CACCTTTCCTATCGACACGAC............................ 21 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................CTTTCCTATCGACACGACGA.......................... 20 0 1 1.00 1 0 1 0 0 0 0
.............................................ATTTGGTAAACAACAAGTACA............................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.....................CGGAGTCGCCTCAATCACGGC....................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................................TTTCCTATCGACACGACGAAG........................ 21 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................ACGGCCTCTAACTGGAACGT...................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0
..........................................................................................................................................CCATCGAATCTTTGAA....................................................................... 16 2 20 0.05 1 0 0 0 0 1 0
..........................................GGAATATGGTGAACAACTA.................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

AACCGCCGGGAAGCAAATGCCGCCTCAGCGGAGTTAGTGCCGCCTTAAACCATTTGTTGTTCATGTATCGTCCCGCATGTCGTGCGGTGCGGGGGATTGACCCTGCAGCCGATATACGTGACCATCGACGATAGCGACGCTAGCTTAGAAACATTTGTTTAAGATAAGTAACGTCCGTGGAAAGGATAGCTGTGCTGCTTCTGCGCGGAGGTTTAGGTTCCAGTC
**************************************************..........((((..((.(((.(((((.(((.((..(((.(((......))).)))))))).))))).))).))..))))....(((((((.((((.((((....))))....)))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
..CCGCCGGGAAGCAAATGCCGCC......................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0
......CGGGAAGCAAATGCCGCC......................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
...............................................................................................................................ACGATAGCGACGCTAGCTTAG............................................................................. 21 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................CGGAGGTTTAGGTTCCAGTC 20 0 1 1.00 1 1 0 0 0
................................GTTAGTGCCGCCTTAAACCATT........................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
..................................................................................................................................ATAGCGACGCTAGCTTAGAAA.......................................................................... 21 0 1 1.00 1 1 0 0 0
...................CCGCCTCAGCGGAGTTAGTGC......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................TCTGCGCGGAGGTTTAGG........ 18 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................GAACGTACGTGGTAAGGATA..................................... 20 3 4 0.25 1 0 0 1 0
...........................................................................................................................................................................CGTACGTGGAAAGGACA..................................... 17 2 8 0.13 1 0 0 1 0
.......GGGAAGCTAATGCCG........................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 1 0
..........................................................................................................................................................................................TAGCTGTGCAGCTTC........................ 15 1 10 0.10 1 0 0 0 1
...........AGCAAATGCCGCCTG....................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 1
.........................................................TGTTCATGTATAGTCGC....................................................................................................................................................... 17 2 17 0.06 1 0 0 0 1
.......AGGTAGCAAATGCCGC.......................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1

Generated: 04/24/2015 at 06:41 AM