ID:

dsi_22428

 Coordinate:

2r:5606966-5607024 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-10.2 -10.1 -10.0

Flybase annnotation

exon [2r_5606868_5606965_+]; CDS [2r_5606868_5606965_+]; CDS [2r_5607025_5607188_+]; exon [2r_5607025_5607264_+]; intron [2r_5606966_5607024_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------##################################################
GGTCAGTCATCTCAACGATAACAATGCCCTGATCCTGGACGAAGACCCAGGTAAGTTATCAAGTGGTTCTCTTCGCACAAGGCTCGAGTCTTAATTCGCTTGCTTGCAGATGAGCCCCAGTCCGAAGCAGAAAAGAACTGGAGCGATCTGGAGGAGGAT
**************************************************(((((....(((((((..(((...((.....))..))).......))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...............................................................................................................................CAGAAAAGAACTGGAGCGATC........... 21 0 1 2.00 2 0 0 2 0 0 0 0 0
.........................................................................................................................CGGAAGCAGAAAAGAACTGGAGCGATC........... 27 1 1 2.00 2 0 2 0 0 0 0 0 0
...........................................................................................................................................GGAGCGATCTGGAGGAGGT. 19 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................CGAAGCAGAAAAGAACTGGAGCGAT............ 25 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................GTAAGTTATCAAGTGGTTCTCT....................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0
............................CTGATCCTGGACGAAGACCC............................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
.GTCAGTCATCTCAACG.............................................................................................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0
........................TGCCCTGATCCTGGACGAAGACCC............................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................TGGACGAAGACCCAGGTAAGT....................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
........................TGCCCTGATCCTGGACGAAGACCCA.............................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 1
............................CTGATCCTGGACGAAGACCCA.............................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0
...........................CCTGATCCTGGACGAAGACCCAGA............................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................CCCTGATCCTGGACGAAGACCCAGA............................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 0 1 0
...........................CCTGATCCGGGTTGAAGAC................................................................................................................. 19 3 13 0.69 9 0 0 0 0 6 3 0 0
....................................................................................................................................AAGAACTGGAGCGATTGCGAG...... 21 3 2 0.50 1 0 0 0 0 0 0 1 0
............................CTGATCCTGGTTGAAGAC................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 1 0 0
...........................GCTGATCCGGGTCGAAGAC................................................................................................................. 19 3 14 0.21 3 0 0 0 0 1 2 0 0
............................CTGATCCGGGTCGAAGAC................................................................................................................. 18 2 5 0.20 1 0 0 0 0 1 0 0 0
.............................TGATCCGGGTCGAAGAC................................................................................................................. 17 2 8 0.13 1 0 0 0 0 0 0 0 1
..............................GATCCCGGACGAACCCCCA.............................................................................................................. 19 3 17 0.06 1 0 0 0 0 1 0 0 0
........................................................................................................................................TCTGGAGCGGTCTGGAGCA.... 19 3 19 0.05 1 1 0 0 0 0 0 0 0
.............................TGATCCTGGTTGAAGACA................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 1 0 0
.................................CCTGGACGAAGACTGACG............................................................................................................ 18 3 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

CCAGTCAGTAGAGTTGCTATTGTTACGGGACTAGGACCTGCTTCTGGGTCCATTCAATAGTTCACCAAGAGAAGCGTGTTCCGAGCTCAGAATTAAGCGAACGAACGTCTACTCGGGGTCAGGCTTCGTCTTTTCTTGACCTCGCTAGACCTCCTCCTA
**************************************************(((((....(((((((..(((...((.....))..))).......))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M025
embryo
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
......................................................................................................................TCAGGCTTCGTCTTTTCTTGA.................... 21 0 1 4.00 4 1 2 1 0 0 0
.................................................................................................................CGGGGTCAGGCTTCGTCTTTT......................... 21 0 1 2.00 2 2 0 0 0 0 0
................................................................................CCGAGCTCAGAATTAAGCGAA.......................................................... 21 0 1 1.00 1 0 0 1 0 0 0
...............................................................................TCCGAGCTCAGAATTAAGCGA........................................................... 21 0 1 1.00 1 0 1 0 0 0 0
......AGTAGAGTTGCTATTGTTA...................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
......AGTAGAGTTGCTATTGTTACG.................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
......AGTAGAGTTGCTATTGTT....................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
..........................................................................CGTGTTCCGAGCTCAGAATTA................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.....CAGTAGAGTTGCTATTGTTA...................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
..........................GGGACTAGGACCTGCTTCTGG................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0
........................................................................GGCGTGTTCCGAGCTCAGAAT.................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................TAAGCGAACGAACGTCTACTC............................................. 21 0 1 1.00 1 0 0 0 1 0 0
..............................................GGTCCCTTCATTAGTTCAGC............................................................................................. 20 3 6 0.17 1 0 0 0 0 1 0
................................................................................................................GCGGGGTCAGTCTTCG............................... 16 2 20 0.05 1 0 0 0 0 0 1
.....................TTTGCGGGACTAGGAGCTG....................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0

Generated: 04/23/2015 at 06:52 PM