ID:

dsi_22411

 Coordinate:

2r:4813733-4813792 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_4813580_4813732_-]; CDS [2r_4813580_4813732_-]; CDS [2r_4813793_4814071_-]; exon [2r_4813793_4814071_-]; intron [2r_4813733_4813792_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------##################################################
CAAACAAATTGTTTAGAATCAAGATCAACCAAATACAGATGAAGGAGACAGTAAGTGCCTTTAGTTTTGATGTAATTTGCACAGACCTAATCTTTCCCCTTCTCCATTAGAATGAGGAGCAAAAGGCGACGGAGGAGCGTGTATTCCAGGATCGCCAGTA
**************************************************..........((((.((((.((((...)))))))).))))....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
........................TCAACCAAATACAGATGAAGGAGAC............................................................................................................... 25 0 1 3.00 3 3 0 0 0
...........................................................................................................TGGAATGAGGAGCAAAAGGCGA............................... 22 1 1 1.00 1 0 1 0 0
................................................................TTTTGATCTAGTTTGCACAGA........................................................................... 21 2 2 0.50 1 0 0 1 0
...............................................................................................................CTGAGGAGCAAAAGG.................................. 15 1 17 0.06 1 0 0 0 1
................................................................................................................TGAGGAGCAAAAGGA................................. 15 1 20 0.05 1 0 1 0 0

Anti-sense strand reads

GTTTGTTTAACAAATCTTAGTTCTAGTTGGTTTATGTCTACTTCCTCTGTCATTCACGGAAATCAAAACTACATTAAACGTGTCTGGATTAGAAAGGGGAAGAGGTAATCTTACTCCTCGTTTTCCGCTGCCTCCTCGCACATAAGGTCCTAGCGGTCAT
**************************************************..........((((.((((.((((...)))))))).))))....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 O001
Testis
 M053
female body
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR1275487
Male larvae		 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
...............................................................................................................................CAGACTACTCGCACATAAGG............. 20 3 2 561.50 1123 632 449 29 6 3 2 0 0 1 1 0 0 0
...............................................................................................................................CAGACTACTCGCACATAAG.............. 19 3 13 56.38 733 399 313 11 1 2 0 0 7 0 0 0 0 0
.................................................................................................................................GACTACTCGCACATAAGG............. 18 2 2 3.50 7 0 0 0 6 0 1 0 0 0 0 0 0 0
..............................................................................................................................GCAGACTACTCGCACATAAGG............. 21 3 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CAGACTCCTCGCACATAAG.............. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTTCCGCTGCCTCCTCGCACA.................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................CAGACTACTCGCACATAAGGTC........... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................ATGTCTTCTGCCTGTGTCAT........................................................................................................... 20 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................GACTACTCGCACATAAGGT............ 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................GTTGGTTTATGTCTACTTCCT.................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......TACCAAATCTTAGTTCTA....................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................GCAGACTACTCGCACATAA............... 19 3 9 0.78 7 5 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CAGTCTACTCGCACATAAGG............. 20 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
GTTTTTGTAACAAAACTTAGTTC......................................................................................................................................... 23 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GACTACTCGCACATAAGGCC........... 20 3 7 0.43 3 0 0 0 0 1 1 0 0 0 0 1 0 0
......................................................................................................................................CTCGCACATAAGGCCCTG........ 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................GTTCTAGTTGGTCTAT............................................................................................................................. 16 1 7 0.29 2 0 0 0 0 0 0 0 2 0 0 0 0 0
..............................................................................................................................GCAGACTACTCGCACATAAG.............. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CTCGCACATAAGGCC........... 15 1 11 0.18 2 0 0 0 0 0 0 1 1 0 0 0 0 0
................................................................................................................................................AGGTCGTAGCGGTCA. 15 1 20 0.15 3 0 0 0 0 0 0 2 1 0 0 0 0 0
......................................................................................................................................CTCGTACATAAGGCCCTGG....... 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................TCGTTCTAGTTGGTCTAT............................................................................................................................. 18 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........CAACTCCTAGTTCTAGATGG.................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................TCCTAGTTGGTTTAT............................................................................................................................. 15 1 20 0.10 2 0 0 0 0 0 0 0 1 0 0 0 0 1
...............................................................................................................................CAGGCTACTCGCACATAAG.............. 19 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............GATCTTAGTTCGAGTTG................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................TTAGTTCTAGTTCGT................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................ATCGTTCTAGTTGGTCTAT............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............TTTTAGTTCTAGTTGGC................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 05:38 AM