ID:

dsi_22410

 Coordinate:

2l:17685595-17685882 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.4 -17.3 -17.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAGCACTAGTCCTTATCTCCATGGATTTCTCGGAATCCGCAGTTGACATGCATGGGCGAGTCACTGAAATATGATAGACAATTCCTGGGAATTCCGATTAAACGGTATTGATGAGTCGTCACTGCCTATAATGAGTTCATTCTAACGCAACAATGTTAGACTTGAAGACTTCACTTAATGAAGATCCAGCATTTGTTCATTTAAACTTTTTAAATAATTCAAAACTCGGAATTCCACTTCATCTTGAAATCCAAACTGGTGACTAACGAAACCCATTCTTCTACAGCTTCGACTGCCACGATCCGTGCGTCTTCACGGCGCCCACGGTGACAGGAC
******************************************************************************************************************************************************************.(((((...................((((.(((((((......)))))))..))))(((((((.....))))).)).....((((...(((((((...)))))))....)))))))))..********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 GSM343915
embryo
.....................................................................................................................................................................................................................................................................TTAAATAATTCAAAACTCGGA.......................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0
..................................................................................................................................................................ATGAGTCGTCACTGCCTATAATGA.......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................TTCGACTGCCACGATCCGTGCGT.......................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................GATGAGTCGTCACTGCCTATAATGA.......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................GATGAGTCGTCACTGCCTATAATGG.......................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................ATAATGCAAAACTCGG........................................................................................................... 16 1 3 0.33 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................CTACACTCGGAATTCCACT.................................................................................................. 19 2 3 0.33 1 0 0 1 0 0 0 0 0
.............................................................................TTTCTCGGAATCCCC........................................................................................................................................................................................................................................................................................................ 15 1 13 0.15 2 0 0 1 0 1 0 0 0
...................................CGGTCCTAAGTTCAGGCG............................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.15 3 0 0 0 0 0 0 3 0
.......................................................................................................................AATAAGATAGACAATTACTGA........................................................................................................................................................................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 0 1
............................AACCGAGCGGTCACAGGT...................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.10 2 0 0 0 0 2 0 0 0
............................................................................................................................................................................................................................................................................................................................................................AATGATCCGTGCGTCTTGA..................... 19 3 13 0.08 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................................................ATGATCCGTGTGTCTTGAC.................... 19 3 13 0.08 1 0 0 0 0 1 0 0 0
...............................................................CTTATCGTCATGGATGTCT.................................................................................................................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................ATCCGTGCGCCTTGACGA.................. 18 3 20 0.05 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................TTCTAACGCTACTATGAT................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0
.......................CACAGAGGAGAGCGGTCA........................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................ACGGTATTGAGGAGTT........................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

ATGCCGTCCAGTGACGTGCGGGCGTAGCTCGTCTCGCCAGTGTTCAAGTCCACTCGTGATCAGGAATAGAGGTACCTAAAGAGCCTTAGGCGTCAACTGTACGTACCCGCTCAGTGACTTTATACTATCTGTTAAGGACCCTTAAGGCTAATTTGCCATAACTACTCAGCAGTGACGGATATTACTCAAGTAAGATTGCGTTGTTACAATCTGAACTTCTGAAGTGAATTACTTCTAGGTCGTAAACAAGTAAATTTGAAAAATTTATTAAGTTTTGAGCCTTAAGGTGAAGTAGAACTTTAGGTTTGACCACTGATTGCTTTGGGTAAGAAGATGTCGAAGCTGACGGTGCTAGGCACGCAGAAGTGCCGCGGGTGCCACTGTCCTG
**********************************************************************************************************.(((((...................((((.(((((((......)))))))..))))(((((((.....))))).)).....((((...(((((((...)))))))....)))))))))..****************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 M023
head
 SRR902009
testis
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR1275483
Male prepupae
.................................................................................................................................TGTGAATGACCCTTAAGG................................................................................................................................................................................................................................................. 18 2 8 86.75 694 459 0 204 0 23 0 0 0 0 5 0 2 1
...................................................................................................................................................................................................................................................................................TGAGCCTTAAGGTGA.................................................................................................. 15 0 1 9.00 9 0 8 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGTGAGCCTTAAGGTGA.................................................................................................. 17 1 2 5.00 10 0 10 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGATGTGAGCCTTAAGGTGA.................................................................................................. 20 2 2 4.50 9 0 5 0 2 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GATGTGAGCCTTAAGGTGA.................................................................................................. 19 2 3 3.00 9 0 8 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGATGTGAGCCTTAAGGTGAA................................................................................................. 21 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGTGAGCCTTAAGGTG................................................................................................... 16 1 5 2.40 12 0 9 0 1 0 1 0 0 0 0 1 0 0
....................................................CTCGTGATCACGTATAGGGG............................................................................................................................................................................................................................................................................................................................ 20 3 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGATGTGAGCCTTAAGGTGAC................................................................................................. 21 3 3 1.67 5 0 3 0 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................GTGAGCCTTAAGGTGA.................................................................................................. 16 1 6 1.50 9 0 6 0 1 0 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................TGTGAGCCTTAAGGTGAG................................................................................................. 18 2 7 1.43 10 0 8 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGTGAGCCTTAAGGTGAA................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................AGCTCGTCTCGCCAGTGTTCA...................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TTGAGCCTTAAGGTG................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGAGCCTTAAGGTGATG................................................................................................ 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGTTGTGAGCCTTAAGGTTA.................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GATGTGAGCCTTAAGGTGAA................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGAGCCTTAAGGTGAG................................................................................................. 16 1 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GATTGCGTTGTTACAATCT................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGATGTGAGCCTTAAGGTGAAT................................................................................................ 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................ATACGGTGCTAGGCACACAGAA....................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............ACGTGCGGGCGTAGCTCATG................................................................................................................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGATATGAGCCTTAAGGTGA.................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ATGTGAGCCTTAAGGTGA.................................................................................................. 18 2 7 1.00 7 0 5 0 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................AGATTTGAGCCTTAAGGTGAC................................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GTGAGCCTTAAGGTG................................................................................................... 15 1 19 0.95 18 0 11 0 3 0 4 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TGAGATGTGAGCCTTAAGGTGA.................................................................................................. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GAGCCTTAAGGTGAG................................................................................................. 15 1 12 0.42 5 0 4 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GAGCCTTAAGGTGAAT................................................................................................ 16 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GAAGCTGACCGTGCTA.................................. 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AGATGTGAGCCTTAAGGTGAG................................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ATGTGAGCCTTAAGGTGAA................................................................................................. 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................ATTCCACTCGTGATCATG.................................................................................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................................................................TGAGCCTTAAGGTGAATG............................................................................................... 18 2 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................AAGAAGAAGTCGAAGCTGACA........................................ 21 2 8 0.25 2 0 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................GTGTGAAGGACCCTTAAGGTT............................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................TGTGAGCCTTAAGGTGAAT................................................................................................ 19 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TGTGAATGACCCTTAAGGTTA.............................................................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................TGTTGGGGACCCTTAAGG................................................................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................AGATGGGAGCCTTAAGGTGA.................................................................................................. 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGAGCCTTAAGGTGAC................................................................................................. 16 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GTGTTAATGACCCTTAAGG................................................................................................................................................................................................................................................. 19 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................GTGTCAATGACCCTTAAGGC................................................................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ATGTGAGCCTTAAGGTGAG................................................................................................. 19 3 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGAGCCTTAAGGTGAGT................................................................................................ 17 2 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................AGAAGTGCCGCGCCTGC.......... 17 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTCAATTACTCCTAGGTC................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GAGCCTTAAGGTGAATG............................................................................................... 17 2 18 0.11 2 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTGTGAATGACCCTTAAGG................................................................................................................................................................................................................................................. 19 3 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GATGTGAGCTTTAAGGTGA.................................................................................................. 19 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGTGAGCCTTAAGTTGAA................................................................................................. 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGAGTCTTAAGGTGA.................................................................................................. 15 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TTAGCCTTAAGGTGA.................................................................................................. 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAAATACTTCTAGGTCGT................................................................................................................................................. 18 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGAGCCTTAAGGTCA.................................................................................................. 15 1 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................GCGGGCGTAGCTCATGT.................................................................................................................................................................................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGAGCGTTAAGGTGA.................................................................................................. 15 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GAGTCTTAAGGTGAA................................................................................................. 15 1 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................CCGCGGGTCCCACTGTA... 17 2 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AGGTGAAGTAGGACT......................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................CCTTAAGGTGATGGAG............................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TGTGAGCCTTAAGGTTA.................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................AGAAGTGCCCCGGGGGCT......... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................TGTTCTAGTCCAGTCGT........................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TGAGTCTTAAGGTGAAT................................................................................................ 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................ATGTGAGCCTTAATGTGAA................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:17685545-17685932 - dsi_22410 TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------CACT---AGTCCT-----------------TATCT-CCATGG-ATTTCTCGGAA-------------------TCCGCAGTTGACATGCATGG----------GCGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTGAAATATGATAGA-C--A-ATTCCTGGGAATTCCGATTAAACGGTATT--GATGA----GTCGTCACTG-----------CCTATAATGAGTTCATTCTAACGCAACAATGTTAGACTTGAAGACTTCACT-TA-ATGAAGATCCAGCATTTGTTCATTTA-A-------------------------------------------------------------------------------------------------------------------ACTTTTTAAAT------AATTCAAAACTC-----GGAATTCCA-CTTC------ATCTTGAAATCC----------AAACTGGTGACTAACG--AAACCCATTC---TTCTACAGCTTCGACTGCCACGATCCGTGCGTCTTCACGGCGCCCACGGTGACAGGAC
droSec2 scaffold_7:1766038-1766425 - TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTCAG------------------------------CACT---AGTCCT-----------------TATCT-CCATGG-ATTTCTCGGAA-------------------TCCGCAGTTGACATGCATGG----------GCGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTGAAATATGATAGA-C--A-ATTCCTGGGAATTCCGATTAAACGGTATT--GATGA----GTCGTCAAAG-----------CCTATAATGAGTTCATTCTAACGCAACAATGTTAGAATTGAAGACTTCACT-TA-ATGAAGATCCAGCATTTGTTCATTTA-A-------------------------------------------------------------------------------------------------------------------ACTTTTTAAAT------AATTAAAAAATC-----GGAATTCCA-CTGC------ATCTTGAAAACC----------AAACTAGTGACTAACG--ATACCCATTC---CTCTACAGCTTCGACTGCCACGATCCGTGCGTCTTCACGGCGCCCACGGTGACAGGAC
dm3 chr2L:18140105-18140492 - TACGGCAGGTCACTGCACGCTCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------CACT---AGTCCT-----------------TATCT-CAACGG-ATTTCTCGGAA-------------------TCCGCAGCTGACATGCATGG----------GCGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGAAATATGATAGA-C--A-ATTCCTGGTAATTCCGATTAAATTATATT--GATGA----GTCGTCGCTG-----------CCTGTAATGAGTTCATTTTATCGCAACAATGTTAGACTTGAAGACAGCACT-TG-TTGAAAATCCAACATTTGTTCATTTA-A-------------------------------------------------------------------------------------------------------------------ACTTTTTAAAT------ATTTCAAAACTC-----GAAATTCCA-CAGC------ACCTTGAAATCC----------AAACTGGTGACTAACG--ATATCCATTC---TTCTACAGCTTCGACTGCCACGATCCGTGTGTGTTCACGGCGCCCACGGTGACAGGAC
droEre2 scaffold_4845:6129195-6129555 + TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------CACTCCGCGTCCT-----------------TATCT-CCTCGG-AGTTCTCGGAA-------------------TCCGCAGTTCACATTCATGGGCGAGCGAAA-CGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATGACATACGATAGA-C--A-ATTCCTAGGAATTTCGATTGAATGAC---------------------------------------------GTTCATTCTAGTGCAAC---------------------------------------------------------------------------------------------------------------------------------------------CTAGAAACTAATTAGATCGAAACTACTTGAACTTTTTAAATACGCGTATTTCAAAACTCGTTCCTTCATGCCATGCAA------ACCATTGAAGCT----------AAGCTG-GGACTAACG--ATACCC-TTCT-TCTCCACAGCTTCGACTGCCACGATCCGTGTGTGTTCACGGCGCCCACGGTGACGGGAC
droYak3 2R:4644789-4645195 - TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------CACT---CGTCCT-----------------TATCT-CCACGG-AGTTCTCGGAA-------------------TACGAAGTCGACATGCATGA----------GTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA----AATATGATATA-C--A-ATTTCTGGGAAATTCGAATTAATGATTTT----CTA----GTCGTCACTG-----------CTTATGATGGGTATACTTAAATTTAA-AATGCTAAACTTGAAGAAATAACT-TA-ATGTAGATCCAATATTTTTTT-TTTC-AACTTC-----------TTAAGACTTGAAAC-------TTTAA---------------------------------------------------------------------------------AA----CATATTTCCAAACTCATTCCGTCATTCCATCATC------ACCTTGAAAGCA----------AAAC-GGTGACTAACTAAATACCCATTCG-TCTCCACAGCTTCGACTGCCACGATCCGTGTGTGTTCACGGCGCCCACGGTGACAGGAC
droEug1 scf7180000409447:78968-79356 - TACGGCAGGTCATTGCATGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAGA----------------------------GCAGT---CGTCCT-----------------TATCT-CCACAG-AATTA----------------------------AAATGAAT----CATGA----------ATGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTAGACA--AAATA-G--A-ATTTCTAGGAAATTTGATTTAATGTTCTT------------TTGTCATTGAATT-C-----CTTGTAATGAGTTCATTTCATTTAATCATT--TTTACTTAGAGTTATTATT-TTTAAGTAAA-AAAAA----GTTTGTTTTGAATTTT-----------TGTATATTTGATAA-------TTTGT--------------------------------------ATAAACTAGAATTTAAT--------------------------------------------------------TTTTT-TTGCTACTAAACAT--------AATAAGTCAAAAAC-G----CTAACA--TTTTCCAATCTTTTTTTACAGCTTCGACTGCCATGATCCGTGTGTGTTTACGGCGCCCACGGTGACGGGAC
droBia1 scf7180000302422:5567049-5567518 + TACGGCAGGTCCCTGCACGCCCGCATCGAGCAGAGCGGCCACAAGTTCAGGTGAG------------------------------CACT---CGTCCT-----------------TGTCT-GGGGTCACCTTCTGGAAACGCCTGATCGCATTTCCACTCCATAGCCTTCATGCAAGT----------GCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATGAACC-TGTGA-A-A--A-ATTTCTGGGAATTTAGATTAGACTGT-TT--GATGA------CATAATG-AATAATCTAATATT-AAATGAGTTCATTATGAA----TAAATTTATTCTTGGAAAATTAATTCTA-ATG---ATTTAGCTT----------TGAGTTGCAGGGCAGTAGGTTTAGCCCTGAACCATATTTGTTTAAAACATAAAAAGTTGCCATATTAAATTACGAAATATTGTGT----CAG----------------------------ATTTTAAAT------ATTTAGAGACAC-----T-----------AT------TTTTTT------AATGAGCCCTAA-------ACTAACG--ACATCCCATGCTTGCTTACAGCTTCGACTGCCATGATCCGTGTGTGTTTACGGCGCCCACGGTGACCGGAC
droTak1 scf7180000415867:358997-359201 - TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------AACT---CGTCCT-----------------TATCT-GGGGTCACTCTCTAGAAA-------------------TTCC---------------------------------------------------------------------------------------------------------------------------------------------------------CATTGATTAGAG----TATTATAGT----GTCGTTCATTAATAGATTAATTCAGGAATGAGCAGGTCAATGGAA-----TAGA-A--A-ATTCTCCGGAATTTAGATTAAATTTGTTT--GATG------TCATCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491338:2091008-2091290 - TACGGCCGATCACTCCATGCCCGCATCGAACAGAGCGGTCACAAGTTCAGGTGAGCCACTGCCACTGCCAATGCCACTGTCACTGCCAT---CGTCCT-----------------TATCTTGGGGTCACTTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTC-TTAAATTTCTG-----------GGAATTTAATTC-------CACCAATCAGCAGATTAATTTATGCGAATGCAAGTCAATGAAAC-TGTGT-GGAATTAAT-TCTTGGAATTATGATTAGGCAGTTTTTAGATGCCAATGGCGTCATTGAATT-G-----CTGA--------------TAATGAAGCAATCT---ATTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTT
droRho1 scf7180000778302:28235-28463 + TACGGCAGATCACTCCACGCCCGCATCGAACAGAGCGGTCACAAGTTCAGGTGAGCATCC------------------------GCACT---CGTCCT-----------------TATCT-GGGGTC-ACTTCTCAAAA-------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------GCTT-----------CGATTTTAATTGCCCTAGACATTAATCACAAGATTAATTCACAAAGCTGCAAGGCAATGAACT-TAAAAGG-A--A-ATTC-CTGGAATTATGATTCGGCAGTTTTTAGATGACGATGTAGTCATTG-----------GTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACG
droFic1 scf7180000454043:201935-202025 - AATTA-----------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTAATG--ATACCCAATCC-TCTTTACAGCTTCGACTGCCACGATCCATCGGTGTTCACCGCACCCACGGTGACGGGAC
droKik1 scf7180000302684:306563-306631 - TACGGCCGATCGCTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------CA-------TCGT-----------------TATCT-CTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:2777784-2777859 + ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACG--ATTCCCCAT-C-TCCCAACAGCTTCGACTGCCACGATCCGTGCGTTTTCACAGCCCCCACGGTGACGGGCC
droBip1 scf7180000396737:1987289-1987353 - CCCATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCCACAGCTTCGACTGCCACGATCCGTGCGTTTTCACGGCCCCCACGGTGACGGGCC
dp5 4_group3:10245674-10245770 + TCTTGCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAACTCCCAACTAATTGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCC-TTTCAATAGCTTCGACTGTCATGATCCGTGCGTGTTTACCGCGCCCACTGTGACGGGCC
droPer2 scaffold_8:1456005-1456101 + TCTTGCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAACTCCCAACTAATTGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCC-TTTCAATAGCTTCGACTGTCATGATCCGTGCGTGTTTACCGCGCCCACTGTGACGGGCC
droWil2 scf2_1100000004577:207352-207497 + AACAA-----------------------------------------------------------------------------------------AGTTAGAGAACCTAAAGCAACAAATGT--------TTAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTT-ATAAATTTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT------AATTTATTAATC-----TGAACTTTT-CTT---------------------------------------------------TT-ATAC-TCTTTACAGCTTTGACTGTCATGATCCATGCGTTTTTACTGCTAGTACTGTGACAGGAT
droVir3 scaffold_12963:8391396-8391700 - dvi_10918 TACGGACGCTCGCTGCACGCGCGCATCGAGCAAAGCGGCCACAAGTTCAGGTGAGTCAATAT--------------------------------AGATAGATAACCA-----------------------------ACA-------------------TTCACATGACACATGCACGA----------ACCAGTCAACTTGTTAAAGTGAGATCTGCAATTGTTGCTGGCTCGGTTAGCAAGTTGCACGTGGTTCTCCACTTCGAGGAATCGATTGCCAACCGACTTTAATCC-GTTCCTTTTTA-ATATTAGCTAACTAACTCCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------CTTTC-TTTA-CATCCACAGCTTTGATTGTCATGATCCGTGCGTGTTTGCTGCTCTGACGGTTACCGGAC
droMoj3 scaffold_6500:1001842-1001985 - CAGCATCATTCATTTAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAATTGTAATTTAAATTTAATTAAATTCATGC----TGAACTTTCAACTAATTTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------TTTCT-GTTG-TCGTTGCAGCTTCGATTGCCATGATCCTTGCGTGTTTGCTGATCTAACGGTGACCGGCC
droGri2 scaffold_15252:5600276-5600393 + ATTC-----------------------------------------------------------------------------------------AACCT-----------------AATTTTTGAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTG-TGACTTTCTGACTAATTGCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------------ATTTGTCAT-CGATTGCAGCTTCGATTGTCATGATCCTTGCGTGTTTGCTGCGCTAACTGTGACTGGTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------CACT---AGTCCT-----------------TATCT-CCATGG-ATTTCTCGGAA-------------------TCCGCAGTTGACATGCATGG----------GCGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTGAAATATGATAGA-C--A-ATTCCTGGGAATTCCGATTAAACGGTATT--GATGA----GTCGTCACTG-----------CCTATAATGAGTTCATTCTAACGCAACAATGTTAGACTTGAAGACTTCACT-TA-ATGAAGATCCAGCATTTGTTCATTTA-A-------------------------------------------------------------------------------------------------------------------ACTTTTTAAAT------AATTCAAAACTC-----GGAATTCCA-CTTC------ATCTTGAAATCC----------AAACTGGTGACTAACG--AAACCCATTC---TTCTACAGCTTCGACTGCCACGATCCGTGCGTCTTCACGGCGCCCACGGTGACAGGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAT------AATTCAAAACTC-----GGA................................................................................................................................2112.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGA----GTCGTCACTG-----------CCTATAATGA.................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGACTGCCACGATCCGTGCGT..........................2311.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGA----GTCGTCACTG-----------CCTATAATGA.................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGA----GTCGTCACTG-----------CCTATAATGG.................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
droSec2
TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTCAG------------------------------CACT---AGTCCT-----------------TATCT-CCATGG-ATTTCTCGGAA-------------------TCCGCAGTTGACATGCATGG----------GCGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTGAAATATGATAGA-C--A-ATTCCTGGGAATTCCGATTAAACGGTATT--GATGA----GTCGTCAAAG-----------CCTATAATGAGTTCATTCTAACGCAACAATGTTAGAATTGAAGACTTCACT-TA-ATGAAGATCCAGCATTTGTTCATTTA-A-------------------------------------------------------------------------------------------------------------------ACTTTTTAAAT------AATTAAAAAATC-----GGAATTCCA-CTGC------ATCTTGAAAACC----------AAACTAGTGACTAACG--ATACCCATTC---CTCTACAGCTTCGACTGCCACGATCCGTGCGTCTTCACGGCGCCCACGGTGACAGGACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACGGCGCCCACGGTGACAG...2211.0010010
.............................GCAGAGCGGTCACAAGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.................CGCCCGCATCGAGCAGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
dm3
TACGGCAGGTCACTGCACGCTCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------CACT---AGTCCT-----------------TATCT-CAACGG-ATTTCTCGGAA-------------------TCCGCAGCTGACATGCATGG----------GCGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGAAATATGATAGA-C--A-ATTCCTGGTAATTCCGATTAAATTATATT--GATGA----GTCGTCGCTG-----------CCTGTAATGAGTTCATTTTATCGCAACAATGTTAGACTTGAAGACAGCACT-TG-TTGAAAATCCAACATTTGTTCATTTA-A-------------------------------------------------------------------------------------------------------------------ACTTTTTAAAT------ATTTCAAAACTC-----GAAATTCCA-CAGC------ACCTTGAAATCC----------AAACTGGTGACTAACG--ATATCCATTC---TTCTACAGCTTCGACTGCCACGATCCGTGTGTGTTCACGGCGCCCACGGTGACAGGACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................CGCATCGAGCAGAGCGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................CGCATCGAGCAGAGCGGTCACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTGCCACGATCCGTGTGT..........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000
.....CAGGTCACTGCACGCTCGCATCGAGCAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTC---TTCTACAGCTTCGA............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTGCCACGATCCGTGT............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCGACTGCCACGATCCGTGTGTGTTC......................3011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CGAGCAGAGCGGTCACAAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTAGACTTGAAGACAGCACT-TG-....................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGACTGCCACGATCCGTGTGT..........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--GATGA----GTCGTCGCTG-----------CCTG.......................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....CAGGTCACTGCACGCTCGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACGATCCGTGTGTGTTCACG...................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCGAGCAGAGCGGTCACAAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.................................AGCGGTCACAAGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGCTG-----------CCTGTAATGAGTT..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.......................CATCGAGCAGAGCGGTCACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG--ATATCCATTC---TTCTACA...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------AAACTGGTGACTAACG--A......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCACGATCCGTGTGTG.........................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATT--GATGA----GTCGTCGCTG-----------CC.........................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCACGATCCGTGTGT..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTAACG--ATATCCATT..............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GCACGCTCGCATCGAGCAGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTAACG--ATATCCATTC---TTCTACAG..................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--GATGA----GTCGTCGCTG-----------C..........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ATCT-CAACGG-ATTTCTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.................CGCTCGCATCGAGCAGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATGTTAGACTTGAAGACAGCACT-.......................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTCACGGCGCCCACGGTGACA....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAATCC----------AAACTGGTGACTA............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATT--GATGA----GTCGTCGCTG-----------CCT........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCCA-CAGC------ACCTTGAATA.....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
..............................................TCAGGTGAG------------------------------CACT---AGTCCT-----------------TA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GGCAGGTCACTGCACGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTCGCATCGAGCAGAGCGGTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........TCACTGCACGCTCGCATCGAGCAGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
........GTCACTGCACGCTCGCATCGAGCAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TCCGCAGCTGACATGCATGG----------GCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCACTGCACGCTCGCATCGAGCAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TATT--GATGA----GTCGTCGCTG-----------T..........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCACGGCGCCCACGGTG.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................................................................GCATGG----------GCGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG--ATATCCATTC---TTCT......................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AGGTCACTGCACGCTCGCATCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GGTCACAAGTTCAGGTGAG------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droEre2
TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------CACTCCGCGTCCT-----------------TATCT-CCTCGG-AGTTCTCGGAA-------------------TCCGCAGTTCACATTCATGGGCGAGCGAAA-CGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAATGACATACGATAGA-C--A-ATTCCTAGGAATTTCGATTGAATGAC---------------------------------------------GTTCATTCTAGTGCAAC---------------------------------------------------------------------------------------------------------------------------------------------CTAGAAACTAATTAGATCGAAACTACTTGAACTTTTTAAATACGCGTATTTCAAAACTCGTTCCTTCATGCCATGCAA------ACCATTGAAGCT----------AAGCTG-GGACTAACG--ATACCC-TTCT-TCTCCACAGCTTCGACTGCCACGATCCGTGTGTGTTCACGGCGCCCACGGTGACGGGACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACG--ATACCC-TTCT-TCTCCACAG..................................................2511.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................ATGACATACGATAGA-C--A-AT......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..............GCACGCCCGCATCGAGCAGAGCGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTCACGGCGCCCAC...........1911.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGCCACGATCCGTGTGT..........................2011.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTAGTGCAAC---------------------------------------------------------------------------------------------------------------------------------------------CTAGA..............................................................................................................................................................................................1811.0011000000
.............TGCACGCCCGCATCGAGCAGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACTTGAACTTTTTAAATACGCGT....................................................................................................................................................2711.0010000100
droYak3
TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------CACT---CGTCCT-----------------TATCT-CCACGG-AGTTCTCGGAA-------------------TACGAAGTCGACATGCATGA----------GTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCA----AATATGATATA-C--A-ATTTCTGGGAAATTCGAATTAATGATTTT----CTA----GTCGTCACTG-----------CTTATGATGGGTATACTTAAATTTAA-AATGCTAAACTTGAAGAAATAACT-TA-ATGTAGATCCAATATTTTTTT-TTTC-AACTTC-----------TTAAGACTTGAAAC-------TTTAA---------------------------------------------------------------------------------AA----CATATTTCCAAACTCATTCCGTCATTCCATCATC------ACCTTGAAAGCA----------AAAC-GGTGACTAACTAAATACCCATTCG-TCTCCACAGCTTCGACTGCCACGATCCGTGTGTGTTCACGGCGCCCACGGTGACAGGACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................ATCGAGCAGAGCGGTCACAAGTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT-TTTC-AACTTC-----------TTAAGACTT...............................................................................................................................................................................................................................................................2211.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACGATCCGTGTGTGTTCACGGCGC...............2811.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCACGATCCGTGTGTGTTCACGGC.................2711.00101000000000
..............GCACGCCCGCATCGAGCAGAGCGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCATTCG-TCTCCACAG..................................................1911.00110000000000
..............GCACGCCCGCATCGAGCAGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------TTAAGACTTGAAAC-------TTT................................................................................................................................................................................................................................................1811.00110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTCACGGCGCCCACGGTGACA....2611.00101000000000
droEug1
TACGGCAGGTCATTGCATGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAGA----------------------------GCAGT---CGTCCT-----------------TATCT-CCACAG-AATTA----------------------------AAATGAAT----CATGA----------ATGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTAGACA--AAATA-G--A-ATTTCTAGGAAATTTGATTTAATGTTCTT------------TTGTCATTGAATT-C-----CTTGTAATGAGTTCATTTCATTTAATCATT--TTTACTTAGAGTTATTATT-TTTAAGTAAA-AAAAA----GTTTGTTTTGAATTTT-----------TGTATATTTGATAA-------TTTGT--------------------------------------ATAAACTAGAATTTAAT--------------------------------------------------------TTTTT-TTGCTACTAAACAT--------AATAAGTCAAAAAC-G----CTAACA--TTTTCCAATCTTTTTTTACAGCTTCGACTGCCATGATCCGTGTGTGTTTACGGCGCCCACGGTGACGGGACSizeHit CountTotal NormTotal
No Reads
droBia1
TACGGCAGGTCCCTGCACGCCCGCATCGAGCAGAGCGGCCACAAGTTCAGGTGAG------------------------------CACT---CGTCCT-----------------TGTCT-GGGGTCACCTTCTGGAAACGCCTGATCGCATTTCCACTCCATAGCCTTCATGCAAGT----------GCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATGAACC-TGTGA-A-A--A-ATTTCTGGGAATTTAGATTAGACTGT-TT--GATGA------CATAATG-AATAATCTAATATT-AAATGAGTTCATTATGAA----TAAATTTATTCTTGGAAAATTAATTCTA-ATG---ATTTAGCTT----------TGAGTTGCAGGGCAGTAGGTTTAGCCCTGAACCATATTTGTTTAAAACATAAAAAGTTGCCATATTAAATTACGAAATATTGTGT----CAG----------------------------ATTTTAAAT------ATTTAGAGACAC-----T-----------AT------TTTTTT------AATGAGCCCTAA-------ACTAACG--ACATCCCATGCTTGCTTACAGCTTCGACTGCCATGATCCGTGTGTGTTTACGGCGCCCACGGTGACCGGACSizeHit CountTotal NormTotal
No Reads
droTak1
TACGGCAGGTCACTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------AACT---CGTCCT-----------------TATCT-GGGGTCACTCTCTAGAAA-------------------TTCC---------------------------------------------------------------------------------------------------------------------------------------------------------CATTGATTAGAG----TATTATAGT----GTCGTTCATTAATAGATTAATTCAGGAATGAGCAGGTCAATGGAA-----TAGA-A--A-ATTCTCCGGAATTTAGATTAAATTTGTTT--GATG------TCATCATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TACGGCCGATCACTCCATGCCCGCATCGAACAGAGCGGTCACAAGTTCAGGTGAGCCACTGCCACTGCCAATGCCACTGTCACTGCCAT---CGTCCT-----------------TATCTTGGGGTCACTTTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTC-TTAAATTTCTG-----------GGAATTTAATTC-------CACCAATCAGCAGATTAATTTATGCGAATGCAAGTCAATGAAAC-TGTGT-GGAATTAAT-TCTTGGAATTATGATTAGGCAGTTTTTAGATGCCAATGGCGTCATTGAATT-G-----CTGA--------------TAATGAAGCAATCT---ATTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCTTSizeHit CountTotal NormTotal
No Reads
droRho1
TACGGCAGATCACTCCACGCCCGCATCGAACAGAGCGGTCACAAGTTCAGGTGAGCATCC------------------------GCACT---CGTCCT-----------------TATCT-GGGGTC-ACTTCTCAAAA-------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------GCTT-----------CGATTTTAATTGCCCTAGACATTAATCACAAGATTAATTCACAAAGCTGCAAGGCAATGAACT-TAAAAGG-A--A-ATTC-CTGGAATTATGATTCGGCAGTTTTTAGATGACGATGTAGTCATTG-----------GTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGSizeHit CountTotal NormTotal
No Reads
droFic1
AATTA-----------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTAATG--ATACCCAATCC-TCTTTACAGCTTCGACTGCCACGATCCATCGGTGTTCACCGCACCCACGGTGACGGGACSizeHit CountTotal NormTotal
No Reads
droKik1
TACGGCCGATCGCTGCACGCCCGCATCGAGCAGAGCGGTCACAAGTTCAGGTGAG------------------------------CA-------TCGT-----------------TATCT-CTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACG--ATTCCCCAT-C-TCCCAACAGCTTCGACTGCCACGATCCGTGCGTTTTCACAGCCCCCACGGTGACGGGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTTTCACAGCCCCCACGGT........2211.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTTCGACTGCCACGATCCGT..............................2311.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACAGCCCCCACGGTGA......2011.001100000
droBip1
CCCATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCCACAGCTTCGACTGCCACGATCCGTGCGTTTTCACGGCCCCCACGGTGACGGGCCSizeHit CountTotal NormTotal
No Reads
dp5
TCTTGCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAACTCCCAACTAATTGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCC-TTTCAATAGCTTCGACTGTCATGATCCGTGCGTGTTTACCGCGCCCACTGTGACGGGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCGTGCGTGTTTACCGC.................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTACCGCGCCCACTGTGAC.....2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATCCGTGCGTGTTTACCGC.................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................TCCCAACTAATTGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCC-...........................................................2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGACTGTCATGATCCGTGC............................2111.0010100000000
......AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAACTCCCAACTAATTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
TCTTGCAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAACTCCCAACTAATTGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCCC-TTTCAATAGCTTCGACTGTCATGATCCGTGCGTGTTTACCGCGCCCACTGTGACGGGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATGATCCGTGCGTGTTTACCGCGCC..............2811.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTTCGACTGTCATGATCCGTGCGT..........................2711.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGACTGTCATGATCCGTGCGTG.........................2611.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTACCGCGCCCACTGTGAC.....2311.001010000
droWil2
AACAA-----------------------------------------------------------------------------------------AGTTAGAGAACCTAAAGCAACAAATGT--------TTAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTT-ATAAATTTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT------AATTTATTAATC-----TGAACTTTT-CTT---------------------------------------------------TT-ATAC-TCTTTACAGCTTTGACTGTCATGATCCATGCGTTTTTACTGCTAGTACTGTGACAGGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGTTTTTACTGCTAGTACTGTGAC.....2711.00100100
droVir3
TACGGACGCTCGCTGCACGCGCGCATCGAGCAAAGCGGCCACAAGTTCAGGTGAGTCAATAT--------------------------------AGATAGATAACCA-----------------------------ACA-------------------TTCACATGACACATGCACGA----------ACCAGTCAACTTGTTAAAGTGAGATCTGCAATTGTTGCTGGCTCGGTTAGCAAGTTGCACGTGGTTCTCCACTTCGAGGAATCGATTGCCAACCGACTTTAATCC-GTTCCTTTTTA-ATATTAGCTAACTAACTCCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------CTTTC-TTTA-CATCCACAGCTTTGATTGTCATGATCCGTGCGTGTTTGCTGCTCTGACGGTTACCGGACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCCGTGCGTGTTTGCTG..................2013.003000000000000000000000000000000000000000000000000000000000000003
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGTCATGATCCGTGCG...........................2112.002000000000000000000001000000010000000000000000000000000000000000
..........CGCTGCACGCGCGCATCGAGCAAAGCGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
.........................TCGAGCAAAGCGGCCACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TCCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------CTTTC-TTTA-CATCCACAG..................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................ACTTTAATCC-GTTCCTTTTTA-ATATTAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
.............TGCACGCGCGCATCGAGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGCTGCTCTGACGGT........2011.001000000000000000000000000000000000000000000000000000000000000001
................................AAGCGGCCACAAGTTCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501000000000000000000001000000000000000000000000000000000000000000
droMoj3
CAGCATCATTCATTTAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAATTGTAATTTAAATTTAATTAAATTCATGC----TGAACTTTCAACTAATTTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------------------------------TTTCT-GTTG-TCGTTGCAGCTTCGATTGCCATGATCCTTGCGTGTTTGCTGATCTAACGGTGACCGGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGCCATGATCCTTGCGTG.........................2212.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCCATGATCCTTGCGTGTT.......................2311.001000001
droGri2
ATTC-----------------------------------------------------------------------------------------AACCT-----------------AATTTTTGAATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTG-TGACTTTCTGACTAATTGCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA---------------------------------------------------------------------ATTTGTCAT-CGATTGCAGCTTCGATTGTCATGATCCTTGCGTGTTTGCTGCGCTAACTGTGACTGGTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:19 AM