ID:dsi_22395 |
Coordinate:3l:7989998-7990255 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
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| -52.6 | -52.6 | -52.6 |
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CDS [3l_7990283_7990353_+]; five_prime_UTR [3l_7990256_7990282_+]; five_prime_UTR [3l_7989780_7989997_+]; exon [3l_7989780_7989997_+]; exon [3l_7990256_7990353_+]; intron [3l_7989998_7990255_+]
No Repeatable elements found
| ##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCAGAGGTGTTAGCGATACAAATAGGTACAAATAAACGATTCCCAGTCACGTATGTACATTTCGCAAGCGTCTGGGTGTGTGTGTGTTTTGTTTGTTGTTGTTGCTTTTATCAGCAGCCCCAAAAAGTGTACACACACTAGTGCAAAGTTTGTTATTGTATTTATTAACATATATTTACTGCTTTGGCCCACGCTTTGTTTGCGCCATTCGCCATTCCGTAATGCGCCATCGGTAAATCGCGAGATCAACACATTTCCCTGGCCGATCAGACCGATATAGCTAACGATTTACGTCCAATCTGTTGCAGGACCCCAGCCCCTCCCACAAAGAAACCATGATGAGCCTGCTCGGGCGGAC ************************************************************...((((((((..(((((((((((((.....((((..(((((((.......)))))))..)))).....))))))))).....((((((..((...(((((........)))))...)).)))))))))))))).))))..((((.(((((......)).)))))))..(((((.......(((((......)))))....)))))******************************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
O001 Testis |
SRR902009 testis |
SRR902008 ovaries |
M024 male body |
O002 Head |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................TTCGCAAGCGTCTGGGTG........................................................................................................................................................................................................................................................................................ | 18 | 0 | 1 | 4.00 | 4 | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................................................................................................................................AAAGAAACCATGATGGGCCTG........... | 21 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................................................GACCCCAGCCCCTCCCAC................................ | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................................................TCAACACATTTCCCTGGCCGA............................................................................................ | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................................................................................................................................................................................TCCCTGGCCGATCAGACCGAT.................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................AACATATATTTACTGCTTTGGC.......................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...................................................................................................................................................................ATTAACATATATTTACTGCTTTGG........................................................................................................................................................................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................CGCCATTCGCCATTCCGTAA........................................................................................................................................ | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................ACATTTCGCAAGCGTCTGGGT......................................................................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................TTTGTGTGTTTTGTTTGTTGTCGT................................................................................................................................................................................................................................................................ | 24 | 2 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................TTTGTGTGTTTTGTTTGTTGTCGTG............................................................................................................................................................................................................................................................... | 25 | 3 | 4 | 0.75 | 3 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................GTCTGGGTGTGTGTGTG................................................................................................................................................................................................................................................................................ | 17 | 0 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .....................................................................................................................................................................................................................................................................GCCCATGAGACCGATA................................................................................. | 16 | 2 | 20 | 0.15 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 |
| ................................................................................................................................................................................................................................................................................................................................................TGATGAGCTAGATCGGGCG... | 19 | 3 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...........AGCGATACAAATAGGACCC........................................................................................................................................................................................................................................................................................................................................ | 19 | 3 | 10 | 0.10 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................AGTTGGTTGTTGTATTTATTTA.............................................................................................................................................................................................. | 22 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...........................................................................................................................................................................................................................................................................................................................................AACCAATATGAGACTGCTC........ | 19 | 3 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................GCACTAGTGCAGAGTTT............................................................................................................................................................................................................... | 17 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................GGTTTTATCCGCAGCGCCA............................................................................................................................................................................................................................................ | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...................................................................................................................................................................................................................................................................TGACCCATGAGACCGATA................................................................................. | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
|
CGTCTCCACAATCGCTATGTTTATCCATGTTTATTTGCTAAGGGTCAGTGCATACATGTAAAGCGTTCGCAGACCCACACACACACAAAACAAACAACAACAACGAAAATAGTCGTCGGGGTTTTTCACATGTGTGTGATCACGTTTCAAACAATAACATAAATAATTGTATATAAATGACGAAACCGGGTGCGAAACAAACGCGGTAAGCGGTAAGGCATTACGCGGTAGCCATTTAGCGCTCTAGTTGTGTAAAGGGACCGGCTAGTCTGGCTATATCGATTGCTAAATGCAGGTTAGACAACGTCCTGGGGTCGGGGAGGGTGTTTCTTTGGTACTACTCGGACGAGCCCGCCTG
********************************************************************************************...((((((((..(((((((((((((.....((((..(((((((.......)))))))..)))).....))))))))).....((((((..((...(((((........)))))...)).)))))))))))))).))))..((((.(((((......)).)))))))..(((((.......(((((......)))))....)))))************************************************************ |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR902009 testis |
M023 head |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR902008 ovaries |
SRR553488 RT_0-2 hours eggs |
M024 male body |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................TAAAGCGTTCGCAGACCCACAC...................................................................................................................................................................................................................................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................TGTTTATTTGCTAAGGGTCAG...................................................................................................................................................................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................CTCTAGTCGTGTAAAGGGAC................................................................................................. | 20 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................................................................ATAAATGCAGGTTAGACAA...................................................... | 19 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................................................AGTCTGGCTATATCGATTGCTA...................................................................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................................TAGCGCTCTAGTTGTGTAAA...................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................CTCTAGTTGTGTAAAGGGAC................................................................................................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................ATATAAATGACGAAACCGGGT....................................................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................AAACGCGGTAAGCGGTAA.............................................................................................................................................. | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................................................................................................AAATGCAGCTTAGGCAACTTC.................................................. | 21 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................................................................................................................AGGCATTAGGCGCTAGCCCT........................................................................................................................... | 20 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................................................ACTTGTGCGTGATCACGT..................................................................................................................................................................................................................... | 18 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................ACATAAATTAGTGTATATAA...................................................................................................................................................................................... | 20 | 2 | 10 | 0.20 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| CGTCTTCACAATGGCTATGG.................................................................................................................................................................................................................................................................................................................................................. | 20 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ......................................................................................................................................................................................................................................................................................TCGATTGGAAGATGCAGGT............................................................. | 19 | 3 | 10 | 0.10 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...................................TGGTAAGGGTCAGCGCA.................................................................................................................................................................................................................................................................................................................. | 17 | 2 | 19 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................................................................................................................GGTGTTTGTTTGGTCCCAC................. | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...................................TGTTATGGGGCAGTGCAT................................................................................................................................................................................................................................................................................................................. | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ................................................................................................................................................................................................................................................................................................................................AGGGAGTTTCTCTGGT...................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:36 AM