dsi_22391

five_prime_UTR [2r_14018570_14018769_+]; exon [2r_14018570_14018769_+]; intron [2r_14018770_14019374_+]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TCAGCCAAGTTGATGGGTCAGTTAGCCCGCGGACCGTGCGACGAGTGCATGTGAGTAGCGATCGATGGTATTTCGTAAATTCGTTGTTTCTGAAGTAGCAGAGTTTTTTTGGCGATCGTGCCTTTTGAGCCGAGTTAGCTTTTAGGCCAATGCCATGAGCAAGCTGAAGTTCGAGCTCGTTTCCGAGTTCAATCGAAAACCAGTTGGCCGAGTGAAGTGGACCGCGATGGCAGAAATTAGTCGAGCTGAA ************************************************..(((..(((((((.((.(((((((.((((.....)))).))))))).))............)))))))..)))..(((((((((((((((((((((....))).)))..)))))))..)))).))))((((.(((......))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
............ATGGGTCAGTTAGCCCGCGGACC.......................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	0	0	1	0	0
...................AGTTAGCCCGCGGACCG......................................................................................................................................................................................................................	17	0	1	1.00	1	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................TGGCCGAGTGAAGTGGACCG..........................	20	0	1	1.00	1	0	0	0	0	1	0	0	0
......................................................................TTTCGTAAATTCGTTGTTTCTGA.............................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0
........................................................................................................................................................CCATGAGCAGGCTGAAGGT...............................................................................	19	2	3	0.67	2	2	0	0	0	0	0	0	0
.............................CGGACCGTGCGAGGA..............................................................................................................................................................................................................	15	1	2	0.50	1	0	0	0	1	0	0	0	0
.............................................................................AATTCCTCGTTTCTGAAG...........................................................................................................................................................	18	2	3	0.33	1	0	0	0	1	0	0	0	0
......................................................................................................................................................TGCCATGAGCAGGCTG....................................................................................	16	1	4	0.25	1	0	1	0	0	0	0	0	0
......................................................................................TTTCTTACGTAGCAGAGT..................................................................................................................................................	18	2	5	0.20	1	1	0	0	0	0	0	0	0
.......................AGCCCGCGGACGGTGTG..................................................................................................................................................................................................................	17	2	5	0.20	1	0	0	0	0	0	0	1	0
........................................................................................................................................................CCATGAGCAGGCTGA...................................................................................	15	1	13	0.15	2	2	0	0	0	0	0	0	0
........................................................................................................................................................CCATGAGCAGGCTGAA..................................................................................	16	1	7	0.14	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CGGAAATTAGTCGCGCTGAC	20	3	7	0.14	1	0	0	1	0	0	0	0	0
.........................................................................................................................................................CATGAGCAGGCTGAAGGT...............................................................................	18	2	8	0.13	1	0	0	0	1	0	0	0	0
.....CAAGATGACGGGTCTGTTA..................................................................................................................................................................................................................................	19	3	8	0.13	1	0	0	0	0	1	0	0	0
.........................................................................................................................................................CATGACCAGGCTGAAGT................................................................................	17	2	18	0.11	2	0	0	0	2	0	0	0	0
.........................................................................................................................................................CATGAGCAGGCTGAAGGTT..............................................................................	19	3	20	0.10	2	1	0	0	1	0	0	0	0
.......................................................................................................................................................GCCATGAGCAGGTTGAA..................................................................................	17	2	20	0.10	2	2	0	0	0	0	0	0	0
........................................................................................................................................................CCATGAGCAGGTTGAA..................................................................................	16	2	20	0.10	2	1	0	0	0	0	0	0	1
.......................................................................................................................................................GCCATGAGCAGGTTGAAG.................................................................................	18	2	12	0.08	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................CATGAGCAGGTTGAAGTT...............................................................................	18	2	14	0.07	1	0	0	0	0	0	0	1	0
................GTCAGTTATCCGGCGGAAC.......................................................................................................................................................................................................................	19	3	15	0.07	1	0	0	1	0	0	0	0	0
..........................................................................GTAAACACGTTGTGTCTGA.............................................................................................................................................................	19	3	16	0.06	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................ATGACCAGGCTGAAGTT...............................................................................	17	2	19	0.05	1	0	0	0	0	0	0	1	0
........................................................................................................................................................CCATGAGCAGGTTGAAGGT...............................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0	0
........................................................................................................................................................CCATGAGCAGGTTGAAG.................................................................................	17	2	20	0.05	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................GCTGCAGTTCGAGCT.........................................................................	15	1	20	0.05	1	0	1	0	0	0	0	0	0
............................................................................GAATTCCTCGTTTCTGAAG...........................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................CGCGTGAAGTTGACCG..........................	16	2	20	0.05	1	0	1	0	0	0	0	0	0
.......................................................................................................................................................GCCATGAGCAGGTTGA...................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0

AGTCGGTTCAACTACCCAGTCAATCGGGCGCCTGGCACGCTGCTCACGTACACTCATCGCTAGCTACCATAAAGCATTTAAGCAACAAAGACTTCATCGTCTCAAAAAAACCGCTAGCACGGAAAACTCGGCTCAATCGAAAATCCGGTTACGGTACTCGTTCGACTTCAAGCTCGAGCAAAGGCTCAAGTTAGCTTTTGGTCAACCGGCTCACTTCACCTGGCGCTACCGTCTTTAATCAGCTCGACTT ************************************************..(((..(((((((.((.(((((((.((((.....)))).))))))).))............)))))))..)))..(((((((((((((((((((((....))).)))..)))))))..)))).))))((((.(((......))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	M024 male body	SRR902009 testis	SRR618934 dsim w501 ovaries
...........................................................................................................................................................................................................................CTGGCGCTACCGTCTTTAATC..........	21	0	1	1.00	1	0	1	0	0
...............................................................................................................................................TCCGGCTACGGTCCTCGTGCG......................................................................................	21	3	3	0.67	2	2	0	0	0
.......................................................................................................AAAAAAACCGCTGGCACTGACAA............................................................................................................................	23	3	3	0.33	1	1	0	0	0
.......................................................................................................AAAAAAACCGCTGGCACTGTAA.............................................................................................................................	22	3	4	0.25	1	0	0	1	0
...............................................................CTACCACAAAGCATTT...........................................................................................................................................................................	16	1	6	0.17	1	0	0	0	1
........................................................................................................AAAAAACCGCTGGCACTGTAA.............................................................................................................................	21	3	8	0.13	1	0	0	1	0
..............................................................................................................................................................................................TTAGCTTTTGGTCAA.............................................	15	0	11	0.09	1	0	0	0	1
...............................................................................................................................................TCCGGCTACGGTCCTCGTGC.......................................................................................	20	3	11	0.09	1	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:14018720-14018969 +	dsi_22391	TCAGCCAAGTT--------GAT------------GGG----TCAGTTAGCCCGCGGACCGTGCGACGAGTGCATGTGAGTAGC-GATCGATGGTATTTCG-------TAAATTCGTTGTT---------------------------------------------------------------------------TCTGAAGTAGCAGAGTTTTTT------T---------------------------------------------------------------------------------------GGCG----A-TCGTG--CCT-TTT-----------GAGCCGAG-TTAGCTTTTA-GG-CCAAT-GCCAT---------GAGCAAGCTGAAGT-TCGAGCTCGTTTCCGAGTT-CAAT--CGA----------------------------AAACCAGTTGGCC----------------GAGTGAAGT-------------G-----GACCGCGATG------GCAG-A--------------------AATTAG--TCGAGCTGAA
droSec2	scaffold_1:10864433-10864694 +		TCAGCCAATTT--------GGT------------GGG----TCAGTTAGCCCGCGGACCGTGCGACGAGTGCATGTGAGTAGC-GATCGATGGTGTTTCC-------TAAATTCGTTGTT---------------------------------------------------------------------------TCTGAAGTAGCAGAGTTTTTT------TTTC------------------------------------------------------------------------------TC-GCTGGCGATCGA-TCGTG--CCT-TTT-----------GTGCCGAG-TTAGCTTTTA-GG-CCAAT-GCCAT---------GAGCAAGCTGAAGT-TCGAGCTCGTTTCCGAGTT-CAAT--CGA----------------------------AAACGAGTTGGCC----------------GAGTGAAGT-------------G-----GACCGCGATG------GCAC-A--------------------AATTAG--TCGAGCTGAA
dm3	chr2R:13366631-13366873 +		TCAGCCAATTT--------GGT------------GGGTCAGTCAGTTAGCCCGCGGACCGTGCGACGAGTGCATGTGAGTAGC-GATCGTTGGTATTTGG-------T-AATTCGTTGCT---------------------------------------------------------------------------TCTGAAGTAACA------------------------------------------------------------------------------------------------------------TCGA-TCGGG--CCTTTTT-----------GAGCCGAG-TTAGCTTTTA-GG-CCAAT-GCCAT---------GAGCAAGCTGAAGT-TCGAGCTCGTTTCCGAGTT-CAAT--CGA----------------------------AAACCAGTTGACC----------------GAGTGAAGT-------------G-----GACCGCGATG------GCAG-A--------------------AATTTG--TCGAGCAGAA
droEre2	scaffold_4845:12488161-12488422 -		TCGGCCAATTTT-------GGT------------GGG----CCAGTTAGCCCTCGGACTGTGCGACGAGTGCATGTGAGTAGC-GATCGCTGAGTT-TTC-------T-AATTCGTTATTTG--GCAGT-------TC------------------GA---------------------------------GCTTGCGGCGGTATTAGAGTTGTTT------TC-----------------------------------------------------------------------------------GCTGGCG----A-TCAGG--GCT-TTT-----------AGGCCGAG-TTAGCTTTTC-GG-CCAAC-GCCAT---------AAGCTGGCTGACAT-TGGAGCTCGTTTCCGAGTT-CAAT--TCA----------------------------AAACCAGTTGGCC----------------CAGTGAAGT-------------G-----G---GGGATG----------------------------GA--CAATAG--TCGAGCTGAA
droYak3	2R:18097870-18098163 -		TCAGCCAATTT--------GGT------------GGG----TCAGTTAGCCCGCGGACCGTGCGACGAGTGCATGTGAGTAGC-GATCGTTGGTTT-TTG-------T-AATTCGCTGTTTT--GCTGT------------------------TTCAA---------------------------------CCATTCGGAAGTATTAGAGTTTTTT------TTTG------------------------------------------------------------------------------GC-GCTGGCG----A-ACGGG--GCT-TTT-----------AAGCCAAG-TTAGCTTTTG-GG-CCAAT-GCCAT---------GAGCAAGCCGAAGT-TCGAGCGCGTTTCCGACTT-CAAT--TGA----------------------------AAACGAGTTAGCC----------------AAATGAAGT-------------GGCTAAAGTCGCGTTG------GCCA-AAGTCGGG-GGATGGAAATT--AATAG--ACGAGCTGAA
droEug1	scf7180000409672:1741734-1742031 -		TCAGCCAATTTC-------GGT------------GGGTTGGTCAGTTGGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCAGTGGTC--TGT-------T-AATTCGTTGATTG--GCTTTCCAAAGTCCATCG---------------------------GTTTTTCGGTGTTCATCGTCGTCGATCCGAAAGTAGCAGAGTTTTTT------C------------------------------------------------------------------AATGCTTTGACTCTGTTT-------------TGAGG--GCT-TTT-----------GAGCCAAG-AAAGCTTTTG-GG-CCAAT-GT----------------------------CGAGCTCGTTTCCGAGTT-CAAT--TGG---------------------------AAAACCAGTTAACG----------------GAGCGAAGTG-GAAGT------G-----GCT----ATAGCTATGGCAC-A------------------------AG--TCGAGTTGAA
droBia1	scf7180000301754:5619131-5619414 +		TCGGCCAAGTT--------GGC------------GGG----TCAGTTTGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCGGCGGCT--TGG-------T-GAATCGTTGGTTT--GACT--------CC------------------GATCGGTCGATCGATCGAAG----------------TATCTCAAAGTAGCAGAGTTTTTC------TTCG------------------------------------------------------------------------------TCT-----C----TT-CGACG--GCT-TTG-----------GAGTCGAG-AAAGCTTTCG-GG-CCCATGGCCAT---------GAGCAACTTAAGTC-CCGAGCTCGTTTCCGAGTT-CGAT--TGG----------------------------AAACCAGTTAACC--------AGTTAACCGAGTGAAGT-------------G-----GGGTTCC--------------A--------------------ATTTAG--ACGATCTGAA
droTak1	scf7180000415138:376403-376708 -		TCAGCCCATTT--------GGT------------GGG----TCAGTTTGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCGGTGGCT--TGG-------T-AATTCGTTATTTT-------CGAGAGTCCGA-------------TTCGATCG--------ATTGTTAGG----------------TCTCAAAGTAGTAGAGTTTTTT------CTCT-----------------------------------------------------------------------------GTCT-----C----GG-TCAGG--GCT-TTC-----------AACTCGAG-AAAGCTTTTCGGGCCCAACGGCCCT---------GAGCAGCTTAAACT-CCGAGCTCGTTTCCGAGTT-CAAT--TGG-----------------AACTC-----GAAACCAGTTAACC----------------AAGTGAAGT-------------G-----GCCAGCTATG------GCAG-AAGTCGGT-GAAAC---GA--AATTAG--ACGATCTGAA
droEle1	scf7180000491214:925153-925457 -		TCAGCCAATTTCTCAATTTGGCTGGTCAGTTTCAGTT----TCAGTTTACCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCGATC------GG-------T-AATTCGTTGTTTG--GG--T-------TT------------------GT---------------------------------CTTTTCCAAAGTAGAAGAGTTTTTT------G---------------------------------------------------------------------------------TTT---CGCA----G-TCAGC--GCT-TTT-----------AAGACGAG-AAAGCTTTCG-GG-CCAAT-GCCAA-CTCAACATTAGC------AACT-CCGAGCTCGTTTCCGAGTT-CAATTTTGG----------------------------AAACCAGTTAACT----------------GAGTGAAGT--GAAGT------G-----GTCTGCGATG------CCAG-AAGTCGGG-GGAAC--AAAT--ATTAGACTTGAGTTGAA
droRho1	scf7180000776786:77386-77690 +		TCAGCCAATTT--------GGT------------GGG----TCAGTTTGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCGATC------GG-------C-AATTCGTTGTTTA--GATATCCAGTGCCTGACGTTC-------------------------------AGTGTTCATCGTC-----GTTCAAAGTAGAAGAGTTTTTG------T--------------------------------------------------------------------------------GTTT-----C----GG-TCAGG--GCT-TTC-----------AAGCCGAG-AAAGCTTTTC-GG-CCAAT-GCCAT---------GAGCAGCTTGAACT-CTGAGCTTGTTTCCGAGTT-GAAATTCAG----------------------------AAACCAGTTAACT----------------GAGTGGAGCGTGGAGT------G-----GTCTGCGATG------CCAA-AAGCCGGG-GCAA---AAAT--ATTTG--ACGAGTTGAA
droFic1	scf7180000453948:2085603-2085910 -		TCAGCCAAATC--------GGT------------GGG----TCAGTTGGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCGGTGGCT--CGG-------T-AATTCGTTATTTG--GTCTGCCAAAGTTCGACGCTT-------------------------------GGTGTTCAT------CGATCCGAAAGTAGCAGAGTTTTTT------TT-------------------------------------------------------------------------------ATTT-----A----AT-TCAGG--GCT-TTC-----------GAGACAAG-AAAGCTTTCG-GG-CCAAT-GCCAT-GAGTCCATGAGCAACTCGATCT-GCGAGCTCGTTTCCGAGTT-CAAT--TGA----------------------------AAACCAGTTAACT----------------GAGTGGAGT-------------G-----GTCGGCTATG------GCTG-AAGACGGA-GAAA---AAAT--TATAG--ACGGGTTGAA
droKik1	scf7180000302385:871394-871685 -		TCAGCCATTTC--------AGT------------GGGTCGGTCAGTTGGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAACCCAGTGATCGTGTCTC--------G-GATTTT----TTT-CGG--T------TTC------------------G-----------------------------------CTTTCAAGAGTATCAGAGTTTATA------T--------------------------------------------------------------------------------ATTT-----A----TTTTCGTGCAACT-TTC-----------AAGCCGCGAAAAGCTTTGA-AAGCCAAT-GCCAT-CA--TC-TGAGTGAGCTCAACTCCGGAGCTCGTTTCCGAGTTTTAAT--TGG----------------------------AAACCAGTTAAGC--------GGCCAACGGAGTGGAGT-------------G-----GTTTT--GTG------GCTGAAA-------GAAAT--ACA--TATTAC--TCGATCTGAA
droAna3	scaffold_13266:8849231-8849568 +		TCGGCCATATT--------GAT------------GGGTCAGTTAGTTAGTCCGCGGATCGTGCGACGAGTGCATGTGAGTAGT-CAGCGATTTCATC-AG-------C-GATTTTTACTTTG--GTT-------GTCCGATGTTCGGTATTTCTTCGATCGAACG--------------------------------ATGGATAGGAGAGTTATTT------TTCG-----GTTTTTTTTTGTGATT-----------------------------------------------------TCTGTTTATTTGTG----G-CTCTC--ACT-TTC-----------AAGCTACA-AAAGCTTTCC-GGGCCATT-GCCGAT---------------CT-------CAACTTTAATTCCGAGTT-TAAT--CGG----------------------------AAACCAGTTAACTGAGCTGAAAGCCAGTCGAGTGAATA-------TCAAGCG-----GATTT---TG-------CTCAAAGTCATCAGA-----AAATAAAGCTG--TTGAGTTGAA
droBip1	scf7180000395648:10684-11018 -		TCGGCCATATT--------GAT------------GGG----TCAGTTAGTCCGCGGATCGTGCGACGAGTGCATGTAAGTAGT-CAGCGATTTCATC-AG------CG-AATTTT----TTGTCGATGTTCGTTGTCCG--GTTCGGTACTTCTTCGATCGATCG--------------------------------ATGGGTAGCAGAGTTATTA------TTCG-----GGT----TATGTGATT-----------------------------------------------------TCTGTTTGTTTGTG----G-CTCTG--ACT-TTC-----------AAGCTACA-AAAGCTTTCC-GGTCCAAT-GCCGAT---------------CT-------CAACTTCAATTCCGAGTT-TAAT--CGG----------------------------AAACCAGTTAACAGAGCCGACAGCCAGTCGAGTGAATT-------TCAAGCG-----GATTT---TG------GCTCAAAGTCATCAGA-----AAATAAAGCTG--TTGAGTTGAA
dp5	3:4820541-4820884 +		TGGGCCAATTT----------C------------GGG----TCAGTTAGCCCGTGGATCGTGTGACGAGTGCATGTAAGTAGC-GTTCAACGGCC--TGCCCCTACCTAAATTCACG-----------GCCAA-----ATCGCTT-------------------------------GGTGTCTGTC------------------------TCTGTCTCCGTCTCCGTCTCAGTTTCGGTTTG--AGTTTCGTTTGAGTAGGCAGCGGCTATCGGAAACAGATTTCTTTCAGAAGTATCA----------------TTAG-CCAG-CC--AT--TAGCCGCACAGAGAGCCA-A-AGAGCGTTTCA-------------AG---------------CTCAACT-------TCAGCT------C-CGAT--TCATCGCCATTACCATTCACAGCTTTGAAAGAAACCAGTTAACT----------------GAGT------------------G-----GCTTTCCATGGCAGTAGCC--A--------------------AAAAAG--TTCGATCGAA
droPer2	scaffold_2:5014498-5014829 +		TGGGCCAATTT----------C------------GGG----TCAGTTAGCCCGTGGATCGTGTGACGAGTGCATGTAAGTAGC-GTTCAACGGCC--TGCCCCTACCTAAATTCACG-----------GCCAA-----ATCGCTT-------------------------------GGTGTCTGTC------------------------------------TCCGTCTCAGTTTCGGTTTG--AGTTTCGTTTGAGTAGGCAGCGGCTATCGGAAACAGATTTCTTTCAGAAGTATCA----------------TTAG-CCCG-CC--AT--TAGCCGCACAGAGAGCCA-A-AGAGCGTTTCA-------------AG---------------CTCAACT-------TCAGCT------C-CGAT--TCATCGCCATTACCATTCACAGCTTTGAAAGAAACCAGTTAATT----------------GAGT------------------G-----GCTTTCCATGGCAGTAGCC--A--------------------AAAAAG--TTCGATCGAA
droVir3	scaffold_12875:12789289-12789339 -		ACGT------T--------TTT------------GGG----CCAGTTTGTTGGCGGATTGTGCGACGAGAGCATGTAAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCAGCCAAGTT--------GAT------------GGG----TCAGTTAGCCCGCGGACCGTGCGACGAGTGCATGTGAGTAGC-GATCGATGGTATTTCG-------TAAATTCGTTGTT---------------------------------------------------------------------------TCTGAAGTAGCAGAGTTTTTT------T---------------------------------------------------------------------------------------GGCG----A-TCGTG--CCT-TTT-----------GAGCCGAG-TTAGCTTTTA-GG-CCAAT-GCCAT---------GAGCAAGCTGAAGT-TCGAGCTCGTTTCCGAGTT-CAAT--CGA----------------------------AAACCAGTTGGCC----------------GAGTGAAGT-------------G-----GACCGCGATG------GCAG-A--------------------AATTAG--TCGAGCTGAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................AT------------GGG----TCAGTTAGCCCGCGGACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGTTAGCCCGCGGACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCC----------------GAGTGAAGT-------------G-----GACCG.......................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................TTTCG-------TAAATTCGTTGTT---------------------------------------------------------------------------TCTGA.........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TCAGCCAATTT--------GGT------------GGG----TCAGTTAGCCCGCGGACCGTGCGACGAGTGCATGTGAGTAGC-GATCGATGGTGTTTCC-------TAAATTCGTTGTT---------------------------------------------------------------------------TCTGAAGTAGCAGAGTTTTTT------TTTC------------------------------------------------------------------------------TC-GCTGGCGATCGA-TCGTG--CCT-TTT-----------GTGCCGAG-TTAGCTTTTA-GG-CCAAT-GCCAT---------GAGCAAGCTGAAGT-TCGAGCTCGTTTCCGAGTT-CAAT--CGA----------------------------AAACGAGTTGGCC----------------GAGTGAAGT-------------G-----GACCGCGATG------GCAC-A--------------------AATTAG--TCGAGCTGAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................CGAGTGCATGTGAGTAGC-GATCGATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
...................................................CGCGGACCGTGCGACGAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGA----------------------------AAACGAGTTGGCC----------------GAGTG...................................................................................	21	1	1.00	1	0	0	0	1

dm3

TCAGCCAATTT--------GGT------------GGGTCAGTCAGTTAGCCCGCGGACCGTGCGACGAGTGCATGTGAGTAGC-GATCGTTGGTATTTGG-------T-AATTCGTTGCT---------------------------------------------------------------------------TCTGAAGTAACA------------------------------------------------------------------------------------------------------------TCGA-TCGGG--CCTTTTT-----------GAGCCGAG-TTAGCTTTTA-GG-CCAAT-GCCAT---------GAGCAAGCTGAAGT-TCGAGCTCGTTTCCGAGTT-CAAT--CGA----------------------------AAACCAGTTGACC----------------GAGTGAAGT-------------G-----GACCGCGATG------GCAG-A--------------------AATTTG--TCGAGCAGAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................AGTTAGCCCGCGGACCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------------TCGA-TCGGG--CCTTTTT-----------G.......................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGACC----------------GAGTGAAGT-------------G-----............................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGACC----------------GAGTGAAGT-------------G-----GACCG.......................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC----------------GAGTGAAGT-------------G-----GACCG.......................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CGCGGACCGTGCGACGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGACC----------------GAGTGAAGT-------------G-----GAC.........................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CGGACCGTGCGACGAGTGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATG------GCAG-A--------------------AATTTG--TCG.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................AGCCCGCGGACCGTGCGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGTTAGCCCGCGGACCGTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CGCGGACCGTGCGACGAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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...................................................CGCGGACCGTGCGACGAGTGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................CGTGCGACGAGTGCATGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATG------GCAG-A--------------------AATTTG--TCGAGC....	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................GAGTAGC-GATCGTTGGTATTTGG-------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................CCGCGGACCGTGCGACGAGTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................GTATTTGG-------T-AATTCGTTGCT---------------------------------------------------------------------------TCTGAA........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CAGTTAGCCCGCGGACCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCGGACCGTGCGACGAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGACC----------------GAGTGAAGT-------------G-----GACCGCGATG------............................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................ATTCGTTGCT---------------------------------------------------------------------------TCTGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AAGT-TCGAGCTCGTTTCCGAG.............................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CAGTTAGCCCGCGGACCGTGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................CCCGCGGACCGTGCGACGAGTGCATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................AGC-GATCGTTGGTATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCGGCCAATTTT-------GGT------------GGG----CCAGTTAGCCCTCGGACTGTGCGACGAGTGCATGTGAGTAGC-GATCGCTGAGTT-TTC-------T-AATTCGTTATTTG--GCAGT-------TC------------------GA---------------------------------GCTTGCGGCGGTATTAGAGTTGTTT------TC-----------------------------------------------------------------------------------GCTGGCG----A-TCAGG--GCT-TTT-----------AGGCCGAG-TTAGCTTTTC-GG-CCAAC-GCCAT---------AAGCTGGCTGACAT-TGGAGCTCGTTTCCGAGTT-CAAT--TCA----------------------------AAACCAGTTGGCC----------------CAGTGAAGT-------------G-----G---GGGATG----------------------------GA--CAATAG--TCGAGCTGAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................GCATGTGAGTAGC-GATCGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
................................................GCCCTCGGACTGTGCGACGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
................................................GCCCTCGGACTGTGCGACGAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0

droYak3

TCAGCCAATTT--------GGT------------GGG----TCAGTTAGCCCGCGGACCGTGCGACGAGTGCATGTGAGTAGC-GATCGTTGGTTT-TTG-------T-AATTCGCTGTTTT--GCTGT------------------------TTCAA---------------------------------CCATTCGGAAGTATTAGAGTTTTTT------TTTG------------------------------------------------------------------------------GC-GCTGGCG----A-ACGGG--GCT-TTT-----------AAGCCAAG-TTAGCTTTTG-GG-CCAAT-GCCAT---------GAGCAAGCCGAAGT-TCGAGCGCGTTTCCGACTT-CAAT--TGA----------------------------AAACGAGTTAGCC----------------AAATGAAGT-------------GGCTAAAGTCGCGTTG------GCCA-AAGTCGGG-GGATGGAAATT--AATAG--ACGAGCTGAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................CAGTTAGCCCGCGGACCGTGCGACGAGTGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	32	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4
...................................................CGCGGACCGTGCGACGAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
..............................................................................................................................................................................................................................TTTG------------------------------------------------------------------------------GC-GCTGGCG----A-ACGGG--G.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................AGCCCGCGGACCGTGCGACGAGTGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................GGACCGTGCGACGAGTGCATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................GCGGACCGTGCGACGAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................CAGTTAGCCCGCGGACCGTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................AGTTAGCCCGCGGACCGTGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................GACGAGTGCATGTGAGTAGC-GATCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................CGGACCGTGCGACGAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................AGCCCGCGGACCGTGCGACGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................GTGCATGTGAGTAGC-GATCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................TTTT------TTTG------------------------------------------------------------------------------GC-GCTGGCG----A-ACGGG--G.........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................CGAGTGCATGTGAGTAGC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGTTAGCC----------------AAATGAAGT-------------GGC...............................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................CGCGGACCGTGCGACGAGTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................CGGACCGTGCGACGAGTGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
............................................GTTAGCCCGCGGACCGTGCGACGAGTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................TTAGCCCGCGGACCGTGCGACGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TCAGCCAATTTC-------GGT------------GGGTTGGTCAGTTGGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCAGTGGTC--TGT-------T-AATTCGTTGATTG--GCTTTCCAAAGTCCATCG---------------------------GTTTTTCGGTGTTCATCGTCGTCGATCCGAAAGTAGCAGAGTTTTTT------C------------------------------------------------------------------AATGCTTTGACTCTGTTT-------------TGAGG--GCT-TTT-----------GAGCCAAG-AAAGCTTTTG-GG-CCAAT-GT----------------------------CGAGCTCGTTTCCGAGTT-CAAT--TGG---------------------------AAAACCAGTTAACG----------------GAGCGAAGTG-GAAGT------G-----GCT----ATAGCTATGGCAC-A------------------------AG--TCGAGTTGAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCGGCCAAGTT--------GGC------------GGG----TCAGTTTGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCGGCGGCT--TGG-------T-GAATCGTTGGTTT--GACT--------CC------------------GATCGGTCGATCGATCGAAG----------------TATCTCAAAGTAGCAGAGTTTTTC------TTCG------------------------------------------------------------------------------TCT-----C----TT-CGACG--GCT-TTG-----------GAGTCGAG-AAAGCTTTCG-GG-CCCATGGCCAT---------GAGCAACTTAAGTC-CCGAGCTCGTTTCCGAGTT-CGAT--TGG----------------------------AAACCAGTTAACC--------AGTTAACCGAGTGAAGT-------------G-----GGGTTCC--------------A--------------------ATTTAG--ACGATCTGAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCAGCCCATTT--------GGT------------GGG----TCAGTTTGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCGGTGGCT--TGG-------T-AATTCGTTATTTT-------CGAGAGTCCGA-------------TTCGATCG--------ATTGTTAGG----------------TCTCAAAGTAGTAGAGTTTTTT------CTCT-----------------------------------------------------------------------------GTCT-----C----GG-TCAGG--GCT-TTC-----------AACTCGAG-AAAGCTTTTCGGGCCCAACGGCCCT---------GAGCAGCTTAAACT-CCGAGCTCGTTTCCGAGTT-CAAT--TGG-----------------AACTC-----GAAACCAGTTAACC----------------AAGTGAAGT-------------G-----GCCAGCTATG------GCAG-AAGTCGGT-GAAAC---GA--AATTAG--ACGATCTGAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCAGCCAATTTCTCAATTTGGCTGGTCAGTTTCAGTT----TCAGTTTACCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCGATC------GG-------T-AATTCGTTGTTTG--GG--T-------TT------------------GT---------------------------------CTTTTCCAAAGTAGAAGAGTTTTTT------G---------------------------------------------------------------------------------TTT---CGCA----G-TCAGC--GCT-TTT-----------AAGACGAG-AAAGCTTTCG-GG-CCAAT-GCCAA-CTCAACATTAGC------AACT-CCGAGCTCGTTTCCGAGTT-CAATTTTGG----------------------------AAACCAGTTAACT----------------GAGTGAAGT--GAAGT------G-----GTCTGCGATG------CCAG-AAGTCGGG-GGAAC--AAAT--ATTAGACTTGAGTTGAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCAGCCAATTT--------GGT------------GGG----TCAGTTTGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCGATC------GG-------C-AATTCGTTGTTTA--GATATCCAGTGCCTGACGTTC-------------------------------AGTGTTCATCGTC-----GTTCAAAGTAGAAGAGTTTTTG------T--------------------------------------------------------------------------------GTTT-----C----GG-TCAGG--GCT-TTC-----------AAGCCGAG-AAAGCTTTTC-GG-CCAAT-GCCAT---------GAGCAGCTTGAACT-CTGAGCTTGTTTCCGAGTT-GAAATTCAG----------------------------AAACCAGTTAACT----------------GAGTGGAGCGTGGAGT------G-----GTCTGCGATG------CCAA-AAGCCGGG-GCAA---AAAT--ATTTG--ACGAGTTGAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCAGCCAAATC--------GGT------------GGG----TCAGTTGGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAGC-GATCGGTGGCT--CGG-------T-AATTCGTTATTTG--GTCTGCCAAAGTTCGACGCTT-------------------------------GGTGTTCAT------CGATCCGAAAGTAGCAGAGTTTTTT------TT-------------------------------------------------------------------------------ATTT-----A----AT-TCAGG--GCT-TTC-----------GAGACAAG-AAAGCTTTCG-GG-CCAAT-GCCAT-GAGTCCATGAGCAACTCGATCT-GCGAGCTCGTTTCCGAGTT-CAAT--TGA----------------------------AAACCAGTTAACT----------------GAGTGGAGT-------------G-----GTCGGCTATG------GCTG-AAGACGGA-GAAA---AAAT--TATAG--ACGGGTTGAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCAGCCATTTC--------AGT------------GGGTCGGTCAGTTGGCCCGCGGACCGTGCGACGAGTGCATGTAAGTAACCCAGTGATCGTGTCTC--------G-GATTTT----TTT-CGG--T------TTC------------------G-----------------------------------CTTTCAAGAGTATCAGAGTTTATA------T--------------------------------------------------------------------------------ATTT-----A----TTTTCGTGCAACT-TTC-----------AAGCCGCGAAAAGCTTTGA-AAGCCAAT-GCCAT-CA--TC-TGAGTGAGCTCAACTCCGGAGCTCGTTTCCGAGTTTTAAT--TGG----------------------------AAACCAGTTAAGC--------GGCCAACGGAGTGGAGT-------------G-----GTTTT--GTG------GCTGAAA-------GAAAT--ACA--TATTAC--TCGATCTGAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCGGCCATATT--------GAT------------GGGTCAGTTAGTTAGTCCGCGGATCGTGCGACGAGTGCATGTGAGTAGT-CAGCGATTTCATC-AG-------C-GATTTTTACTTTG--GTT-------GTCCGATGTTCGGTATTTCTTCGATCGAACG--------------------------------ATGGATAGGAGAGTTATTT------TTCG-----GTTTTTTTTTGTGATT-----------------------------------------------------TCTGTTTATTTGTG----G-CTCTC--ACT-TTC-----------AAGCTACA-AAAGCTTTCC-GGGCCATT-GCCGAT---------------CT-------CAACTTTAATTCCGAGTT-TAAT--CGG----------------------------AAACCAGTTAACTGAGCTGAAAGCCAGTCGAGTGAATA-------TCAAGCG-----GATTT---TG-------CTCAAAGTCATCAGA-----AAATAAAGCTG--TTGAGTTGAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................................................................................CTC--ACT-TTC-----------AAGCTACA-AAA............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
............................................GTTAGTCCGCGGATCGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TCAAGCG-----GATTT---TG-------CTCAAAGT...................................	23	1	1.00	1	0	1	0	0	0	0
...........................................AGTTAGTCCGCGGATCGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
....................................................GCGGATCGTGCGACGAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0

droBip1

TCGGCCATATT--------GAT------------GGG----TCAGTTAGTCCGCGGATCGTGCGACGAGTGCATGTAAGTAGT-CAGCGATTTCATC-AG------CG-AATTTT----TTGTCGATGTTCGTTGTCCG--GTTCGGTACTTCTTCGATCGATCG--------------------------------ATGGGTAGCAGAGTTATTA------TTCG-----GGT----TATGTGATT-----------------------------------------------------TCTGTTTGTTTGTG----G-CTCTG--ACT-TTC-----------AAGCTACA-AAAGCTTTCC-GGTCCAAT-GCCGAT---------------CT-------CAACTTCAATTCCGAGTT-TAAT--CGG----------------------------AAACCAGTTAACAGAGCCGACAGCCAGTCGAGTGAATT-------TCAAGCG-----GATTT---TG------GCTCAAAGTCATCAGA-----AAATAAAGCTG--TTGAGTTGAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGGGCCAATTT----------C------------GGG----TCAGTTAGCCCGTGGATCGTGTGACGAGTGCATGTAAGTAGC-GTTCAACGGCC--TGCCCCTACCTAAATTCACG-----------GCCAA-----ATCGCTT-------------------------------GGTGTCTGTC------------------------TCTGTCTCCGTCTCCGTCTCAGTTTCGGTTTG--AGTTTCGTTTGAGTAGGCAGCGGCTATCGGAAACAGATTTCTTTCAGAAGTATCA----------------TTAG-CCAG-CC--AT--TAGCCGCACAGAGAGCCA-A-AGAGCGTTTCA-------------AG---------------CTCAACT-------TCAGCT------C-CGAT--TCATCGCCATTACCATTCACAGCTTTGAAAGAAACCAGTTAACT----------------GAGT------------------G-----GCTTTCCATGGCAGTAGCC--A--------------------AAAAAG--TTCGATCGAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................GTTAGCCCGTGGATCGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GTTTGAGTAGGCAGCGGCTATCGGAA.............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGGGCCAATTT----------C------------GGG----TCAGTTAGCCCGTGGATCGTGTGACGAGTGCATGTAAGTAGC-GTTCAACGGCC--TGCCCCTACCTAAATTCACG-----------GCCAA-----ATCGCTT-------------------------------GGTGTCTGTC------------------------------------TCCGTCTCAGTTTCGGTTTG--AGTTTCGTTTGAGTAGGCAGCGGCTATCGGAAACAGATTTCTTTCAGAAGTATCA----------------TTAG-CCCG-CC--AT--TAGCCGCACAGAGAGCCA-A-AGAGCGTTTCA-------------AG---------------CTCAACT-------TCAGCT------C-CGAT--TCATCGCCATTACCATTCACAGCTTTGAAAGAAACCAGTTAATT----------------GAGT------------------G-----GCTTTCCATGGCAGTAGCC--A--------------------AAAAAG--TTCGATCGAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droVir3

ACGT------T--------TTT------------GGG----CCAGTTTGTTGGCGGATTGTGCGACGAGAGCATGTAAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................AGTTTGTTGGCGGATTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	3.50	7	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................GG----CCAGTTTGTTGGCGGATTGTGCGACGAGAGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	36	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................GTTGGCGGATTGTGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TTGGCGGATTGTGCGACGAGAGCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................GTTGGCGGATTGTGCGACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................TTGTTGGCGGATTGTGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGTTTGTTGGCGGATTGTGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGTTTGTTGGCGGATTGTGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................TGTTGGCGGATTGTGCGACGAGAGCATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGTTTGTTGGCGGATTGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CAGTTTGTTGGCGGATTGTGCGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................GTTGGCGGATTGTGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.............................................TTTGTTGGCGGATTGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CAGTTTGTTGGCGGATTGTGCGACGAGAGCATGTAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	38	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................AGTTTGTTGGCGGATTGTGCGACGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GGATTGTGCGACGAGAGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GGATTGTGCGACGAGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGTTTGTTGGCGGATTGTGCGACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................GCGACGAGAGCATGTAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................GTTTGTTGGCGGATTGTGCGACGAGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TTGGCGGATTGTGCGACGAGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................GTTGGCGGATTGTGCGACGAGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

dsi_22391

2r:14018770-14018919 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-40.1	-39.9	-39.9