ID:

dsi_22374

 Coordinate:

3l:15775162-15775311 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.4 -12.9 -12.7 -12.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATACACAAGTAAAAAAATCGAAATAATAGCGAGTATCACGTCGATAAAAGGTGAGCGAAGCACTTTTTTATTGGGGAAAAACCTTTTTTAAGCCGATTAGCCATAAAAGCACAGCGTAATTGAACTTTGGAGCTGCAAAAGTGTGCCCAATATTCGGTAGCCGCACTGTGGGCGCTATCTAATTATAAGCTATTCATATTCCATCCAAAATCTGCTCTCTATAAATCGCATTCCGGCGACTTCCTGTCAA
*************************************************************************************************************************..........((......((((((((........)))....)))))....))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..................................................................................................................CGTAGTTGAACTTTGGAC...................................................................................................................... 18 2 9 31.56 284 167 115 0 0 0 2 0 0
..................................................................................................................CGTAGTTGAACTTTGGGAC..................................................................................................................... 19 3 19 7.79 148 84 61 0 0 0 3 0 0
..................................................................................................................CGTAGTTGAACTTTGGGG...................................................................................................................... 18 2 5 3.40 17 17 0 0 0 0 0 0 0
..................................................................................................................CGTAGTTGAACTTTGGGGCCG................................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................................................................CGTAGTTGAACTTTGGGCCTG................................................................................................................... 21 3 5 1.00 5 3 2 0 0 0 0 0 0
..................................................................................................................CGTAGTTGAACTTTGGACCCG................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ATAAATCGCATTCCGGCGACTTCCT..... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................GAACTTTGGAGCTGCAAAAGT............................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................................................CACAGCGTAATTGAACTTTGGAGCT.................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................CGTAGTTGAACTTTGG........................................................................................................................ 16 1 4 1.00 4 0 0 0 2 2 0 0 0
....................................................................................................................................................AATATTCGGTAGCCGCACTGTGGGC............................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................................................................................CGTAGTTGAACTTTGGCCC..................................................................................................................... 19 3 20 0.90 18 13 5 0 0 0 0 0 0
..................................................................................................................CGTAGTTGAACTTTGGACCC.................................................................................................................... 20 3 8 0.75 6 2 3 0 0 0 0 1 0
..................................................................................................................CGTAGTTGAACTTTGGACC..................................................................................................................... 19 2 4 0.75 3 2 1 0 0 0 0 0 0
..................................................................................................................CGTAGTTGAACTTTGGGCCT.................................................................................................................... 20 3 11 0.55 6 6 0 0 0 0 0 0 0
..................................................................................................................CGTAGTTGAACTTTGGGGC..................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................................................GTAGTTGAACTTTGGACCCG................................................................................................................... 20 3 7 0.43 3 3 0 0 0 0 0 0 0
..................................................................................................................CGTAGTTGAACTTTGGGGCC.................................................................................................................... 20 3 6 0.33 2 1 1 0 0 0 0 0 0
..................................................................................................................CGTAATTGAACTTTGGGCCCG................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0
................................................................................................................AGCGTAGTTGAACTTTGGGC...................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0
..................................................................................................................CGTAGTTGAACTTTG......................................................................................................................... 15 1 15 0.13 2 0 0 0 1 1 0 0 0
.................................................................................................................GCGTAGTTGAACTTTGGGCC..................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TCCGGCGACTTACTGTA.. 17 2 8 0.13 1 0 0 0 1 0 0 0 0
..................................................................................................................CGTAGTTGAACCTTGG........................................................................................................................ 16 2 20 0.10 2 0 0 0 1 1 0 0 0
.........................................CGATAGAAGGTAAGGGAAG.............................................................................................................................................................................................. 19 3 11 0.09 1 0 0 0 0 0 0 0 1
..................................................................................................................CGTAGTTGAACTTTGGCCCT.................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0
.................................................................................................................TCGTAGTTGAACTTTGGGG...................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TATGTGTTCATTTTTTTAGCTTTATTATCGCTCATAGTGCAGCTATTTTCCACTCGCTTCGTGAAAAAATAACCCCTTTTTGGAAAAAATTCGGCTAATCGGTATTTTCGTGTCGCATTAACTTGAAACCTCGACGTTTTCACACGGGTTATAAGCCATCGGCGTGACACCCGCGATAGATTAATATTCGATAAGTATAAGGTAGGTTTTAGACGAGAGATATTTAGCGTAAGGCCGCTGAAGGACAGTT
*****************************************************************************..........((......((((((((........)))....)))))....))************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................................................................................................TTAGGCCGCTGAAGGA..... 16 1 1 1.00 1 1 0 0 0 0 0
....................................................CTCGCTTCGTGAAAA....................................................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................CCCGAGATTGATTAATAT............................................................... 18 2 2 0.50 1 0 0 1 0 0 0
.....................................................................................................................................................................................................................................TTAGGCCGCTGAAGG...... 15 1 7 0.29 2 0 0 0 2 0 0
.....................................................................................................................................................................................................................................TTAGGCCGCTGAAGGAT.... 17 2 8 0.25 2 2 0 0 0 0 0
................................................................................................................................................................................................AAGTATAAGGTAAGT........................................... 15 1 20 0.10 2 0 1 0 0 0 1
..................GTTCTATTAGCGCTCATAG..................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 1 0
....................................................................................................................................................................................................................................GTAAGGCAGCTGAAGGG..... 17 2 20 0.05 1 0 0 0 1 0 0

Generated: 04/23/2015 at 08:57 PM