ID:

dsi_22363

 Coordinate:

3r:4404930-4405079 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.8 -28.8 -28.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAACAGCGATGGTACCTTCGTCGGCGGCGATAAGGCCGACATTGTCGGAGGTGCGTATGCTCCAGATCCCCCTGATATCTGCCAGATAGATAGATGCATAGATAGATAATAAGTAAATGACACTCGGCCAGCACATGGCCTCGAACAAATTCAATTAGGGGAGCGCTCCAGTCGCGCAACTATAAAGTTATACAACGGCCATAAATGGCGGTAGGCCGATCTGGATTCCACTATCGGACCGGATCATTCC
**************************************************.(((((..(((..((...(((((((((((((.....))))))(((((((..((.........))..))).)).))(((((.....)))))..............)))))))....))..))).)))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O002
Head
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
.................TCGTCGGCGGCGATAAGG....................................................................................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0
....................................................................................................................................................................GCTCCAGTCGCGCAA....................................................................... 15 0 1 1.00 1 1 0 0 0 0
..............................TAAGGCCGACATTGTCGGAGCCA..................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................TCTGGATTCCACTATCGGACC.......... 21 0 1 1.00 1 0 0 0 1 0
.................................................................................................................................................CAAATTCAATTAGGGGAG....................................................................................... 18 0 1 1.00 1 0 0 1 0 0
....................................................................................................................................................................GCTCCAGTTGCGCAA....................................................................... 15 1 20 0.55 11 11 0 0 0 0
...........ATACCATCGTCGGTGGCGATA.......................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1
....................................................................................................................................................................GCTCCAGTAGCGCAA....................................................................... 15 1 7 0.29 2 2 0 0 0 0
....................................................................................................................................................................GCTCCAGTCGCGCAAG...................................................................... 16 1 4 0.25 1 1 0 0 0 0
....................................................................................................................................................................GCTCCAGTCACGCAA....................................................................... 15 1 4 0.25 1 1 0 0 0 0
....................................................................................................................ATGAGACTCGGCCACCA..................................................................................................................... 17 2 10 0.10 1 1 0 0 0 0
....................................................................................................................................................................GCTCCAGTCGCGCAG....................................................................... 15 1 10 0.10 1 1 0 0 0 0
..........................................................................ATATCTTCCAGATAGA................................................................................................................................................................ 16 1 11 0.09 1 1 0 0 0 0

Anti-sense strand reads

GTTGTCGCTACCATGGAAGCAGCCGCCGCTATTCCGGCTGTAACAGCCTCCACGCATACGAGGTCTAGGGGGACTATAGACGGTCTATCTATCTACGTATCTATCTATTATTCATTTACTGTGAGCCGGTCGTGTACCGGAGCTTGTTTAAGTTAATCCCCTCGCGAGGTCAGCGCGTTGATATTTCAATATGTTGCCGGTATTTACCGCCATCCGGCTAGACCTAAGGTGATAGCCTGGCCTAGTAAGG
**************************************************.(((((..(((..((...(((((((((((((.....))))))(((((((..((.........))..))).)).))(((((.....)))))..............)))))))....))..))).)))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
...GTCGCTACCATGGAAGCAGCC.................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................AGGAGGACTATAGACG........................................................................................................................................................................ 16 1 3 2.00 6 0 3 1 0 1 1 0 0
....................................................................................................................................................................................................................CCCGGCTAGACCTAAGGTGAT................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................CGGAGCTTGTTTAAGTTAAT............................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0
................................................................CAAGGAGGACTATAGACG........................................................................................................................................................................ 18 2 7 0.71 5 0 2 2 0 0 1 0 0
..................................................................AGGAGGACTATAGAC......................................................................................................................................................................... 15 1 12 0.50 6 0 5 0 0 1 0 0 0
.............................................................GGTCTAGTGGGACTAT............................................................................................................................................................................. 16 1 2 0.50 1 0 0 1 0 0 0 0 0
...................................................................GGAGGACTATAGACG........................................................................................................................................................................ 15 1 7 0.29 2 0 1 0 0 1 0 0 0
..................GCAGACGCCGCTATCCCG...................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0
............................................................................................................................................AGCTTGTTTAAGTTAA.............................................................................................. 16 0 4 0.25 1 0 0 1 0 0 0 0 0
..................................................................AGGAGGACTATAGACGC....................................................................................................................................................................... 17 2 17 0.24 4 0 2 2 0 0 0 0 0
..................................................................AGGCGGACTATAGACG........................................................................................................................................................................ 16 1 5 0.20 1 0 0 0 0 1 0 0 0
.................................................................AAGGAGGACTATAGACG........................................................................................................................................................................ 17 2 20 0.20 4 0 3 0 0 1 0 0 0
...........................................................................ACAGACGGTCTATCTA............................................................................................................................................................... 16 1 6 0.17 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................GAGTCCTATGGTGATAGC.............. 18 3 20 0.10 2 0 0 0 0 0 0 0 2
................................................................................................................................................................................................................ACCACCCGGCTCGACCTAA....................... 19 3 20 0.10 2 0 2 0 0 0 0 0 0
......................................................................................................................................................................................................................CGGCTAGGCCTGAGGTGGTA................ 20 3 11 0.09 1 0 0 0 0 0 0 1 0
...............................................................................ACGGTCAATATGTCTACGTA....................................................................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CCGGCGAGACCTTAGGT.................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................................TCTGCGGGTTGATATTT................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0

Generated: 04/24/2015 at 05:41 AM