ID:

dsi_22352

 Coordinate:

3r:9355279-9355428 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.6 -9.6 -9.5 -9.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTCAGCTCCACCCGCACCGTGGTGTTCGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAAAGCAGCACAAGCATTAAAGGCCCAAGCACACAGCGTAGACTCACTCACCCTCTATTTGTCTGACTCTTAATATGCCTATCGCTAGTTAGCTAGTCTGTAAGGTCTGTTGCTATTTGCCGGCTTATCTAATTTAAATAATTAAACCATACATGCAAACCATCCGCC
***********************************************************************************************************************..((...............((((....((((.(((((..((.....))..)))))..))))....))))))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.......................................................................................................................GTAGACTCACTCACCCTCT................................................................................................................ 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................GTAGACTCACTCACCCTCTATT............................................................................................................. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.................................................................................................................CACAGCGTAGACTCACTCACCCT.................................................................................................................. 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................CACTCACCCTCTATTTGTCTGACT.................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................CACCCTCTATTTGTCTGACT.................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................CTCTATTTGTCTGACTCTTAATATGCC......................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................AAGCACACAGCGTAGACTCACTCACC.................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATTTGCCGGCTTATCTAAT................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTAGCTAGTTGGTAAGGT.............................................................. 18 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0
............................................................................................................................................TTGTCTGACTCTTAATATGCCT........................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................ACACAGCGTAGACTCACTC....................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................ACAGCGTAGACTCACTCACCCT.................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................ACAGCGTAGACTCACTCACCCC.................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................GACTCACTCACCCTCTATTTGTCTGACT.................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TAGCTAGTCTGTAAGGTCT............................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TTAGCTAGTATGTAAGGTCTGTTGCT...................................................... 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................CACAGCGTAGACTCACTCACCC................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................GCGTAGACTCACTCACCCT.................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TGTCTGACTCTTAATATGCCTA....................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........ACCCGCACCGTGGTGTTCG.............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................ACACAGCGTAGACTCACTCACC.................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................GCCTATCGCTAGTTAGCTAGTCTGTAAG................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................GGTACGCTGAGAACGAAGT...................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................GACTCTTAATATGCCTATCGCTAGT............................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................GTAAGGTCAGTTGCTA..................................................... 16 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................TTAGCTAGTTGGTAAGGTA............................................................. 19 3 20 0.35 7 0 0 0 7 0 0 0 0 0 0
...........................................................................................................................................................................................TCTGTTGCTCATTGCCGG............................................. 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0
...........................................GCCCGAGGTACGGGGATC............................................................................................................................................................................................. 18 3 20 0.10 2 0 0 0 0 0 0 0 0 2 0
....................GGTGTTCGGGAAGGACG..................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................ATTAGCTAGTTGGTAAGGT.............................................................. 19 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0
..............TACCGTGGTGTTGGAA............................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................GTTAGCTAGTTGGTGAGGT.............................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..................................................GGACGGTGATCACGAAGTC..................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CAGTCGAGGTGGGCGTGGCACCACAAGCTTTTCCTGCTGTTGTCGGGCTCCATGCGACTATTGCTTCAGTTGAGCTTGTCGTCTTTCGTCGTGTTCGTAATTTCCGGGTTCGTGTGTCGCATCTGAGTGAGTGGGAGATAAACAGACTGAGAATTATACGGATAGCGATCAATCGATCAGACATTCCAGACAACGATAAACGGCCGAATAGATTAAATTTATTAATTTGGTATGTACGTTTGGTAGGCGG
************************************************************..((...............((((....((((.(((((..((.....))..)))))..))))....))))))*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..........................................................................................................................................TAAACAGACTGAGCATT............................................................................................... 17 1 3 1.33 4 4 0 0 0 0
...............................................................................................................................................................GGATAGCGATCCATCG........................................................................... 16 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................TTGGGAGATAAACAGACTGAGA.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
........................ACGCTTTTCCGGCGGTTGTCGG............................................................................................................................................................................................................ 22 3 3 0.33 1 0 0 0 1 0
.AGTCGAGCTGGGAGTGGC....................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 1 0 0
..........................................................................................................................................TAAACAGACTGAGCAT................................................................................................ 16 1 4 0.25 1 1 0 0 0 0
.............................................................................................................................................................TAGGATAGCGATCCATCG........................................................................... 18 3 20 0.15 3 1 0 1 1 0
..........................................................................................................................................TAAACAGACTGAGCATTT.............................................................................................. 18 2 7 0.14 1 1 0 0 0 0
..........................................................................................................................................TAAACAGACTGAGCATTC.............................................................................................. 18 2 9 0.11 1 1 0 0 0 0
..........................................................................................................GGTTCGAGTATCGCATCTC............................................................................................................................. 19 3 9 0.11 1 0 0 1 0 0
...........................................................................................................................................AAACAGACTGAGCAT................................................................................................ 15 1 9 0.11 1 1 0 0 0 0
................................CTGGCTGATGTCGGGCTCC....................................................................................................................................................................................................... 19 3 12 0.08 1 0 1 0 0 0
.................................................................................................................................................................AGAGCGATCAGCCGATCAG...................................................................... 19 3 13 0.08 1 0 0 0 0 1
................................CCGGCTGATGTCGGGGTCC....................................................................................................................................................................................................... 19 3 14 0.07 1 0 1 0 0 0
................................................................................GTCTTTCGTCGTGTTTATAAT..................................................................................................................................................... 21 2 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:9355229-9355478 + dsi_22352 GT------CAGCT-------------CCACCCGCACCGTGGTGTTCGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTAAAGGCCCAAGCACACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCC
droSec2 scaffold_0:10063800-10064049 + GT------CAGCT-------------CCACCCGCACCGTGGTGTTCGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTAAAGGCCCAAGCACACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCC
dm3 chr3R:11895385-11895634 - GT------CAGCT-------------CCACCCGCACCGTGGTGTTCGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTAAAGGCCCAAGCACACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------TCTAATTATCTGACTTTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCC
droEre2 scaffold_4770:11418960-11419208 - GT------CAGCT-------------CCACCCGCACAGTGGTGTTTGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACACAG--------------CGTAG---ACG----------------------CTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCC
droYak3 3R:14539327-14539575 + GT------CAGCT-------------CCACCCGCACCGTGGTGTTTGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACACAG--------------CGTAG---ACT----------------------CTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCC
droEug1 scf7180000409797:1636701-1636949 + GT------CAGCT-------------CCACCCGCACCGTGGTGTATGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACACAG--------------CGTAG---ACT----------------------CTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCC
droBia1 scf7180000302136:1514803-1515064 - GT------CAGCT-------------CCACCCGCACCGTGGTCTTTGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCCAGCACACAG--------------CGTAG---ACT-----GCTCCACTAC------TCTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------ATA-TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATCT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATT----------CGCC
droTak1 scf7180000415242:207800-208031 + --------CAGCT-------------CCACCCGCACCGTTGTCTTCGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCCAGCACAC----------------------------------------------------------------------------------------------ATTTGTCTGACTCTTAACA----TAC-------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGTT-TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----CAACC--------ATC----------CGCC
droEle1 scf7180000491080:1692804-1693068 - GT------CAGCT-------------CCACCCGCACCGTGGTCTTCGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACCCAG--------------CATAG---ACT--------------CTATCTATCTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGCCAGTTAGC----TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCC
droRho1 scf7180000779241:64314-64562 + GT------TAGCT-------------CTACCCGCACCGTGGTCTTTGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACCCAG--------------CATAG---ACT----------------------CTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCC
droFic1 scf7180000452523:1287490-1287743 - GT------TAGCT-------------CCACACGCACCGTGGTCTACGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACCCAG--------------CGTAGTAGACT--------------C------TCTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCC
droKik1 scf7180000302639:764683-764943 + GT------GAGCA-------------CCACGCGGACCGTGGTCTTTGAAAAGGAAGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAC---------AGCAGCACAAGCATTA-AGGCCCAAGCAC--AG--------------CGTAG---ACT--------------C------TCTCTCACCC---------------------------------TCTAGTTGTCCGCCTCTTA-----------------------------------------------------------A---TATCGCC--T-ATCGCTAGTTAGCTA----------TAGTCTGTAAGGTCTGT--TGCTAT-T-GCCGGCT--TATCTAATTTAAATAATTAAATCATACATGC----AAACC--------ATCCACCATCCGCCGCC
droAna3 scaffold_13340:21680958-21681190 + GT------CAGCA-------------CCACTCGCACCGTGGTCTATGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAC---------AGCAGCACAAGCATTA-AGGCCCAAGCACC--------------------------------------------A---------------------------TCC-----------------AAACATTATCCGCCTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGTT-TGCTAT-T-GCCGGCT--TATCTAATTTAAATAATTAAATCATACATGC----AAACC--------ATC----------CGCC
droBip1 scf7180000396413:857215-857446 - GT------CAGCA-------------CCACTCGCACCGTGGTCTATGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAC---------AGCAGCACAAGCATTA-AGGCCCAAGCACAC--------------------------------------------------------CC---------------------------------AAACATTATCCGCCTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGTT-TGCTAT-T-GCCGGCT--TATCTAATTTAAATAATTAAATCATACATGC----AAACC--------ATC----------CGCC
dp5 2:26177987-26178314 + dps_803 GTGGGGCCCAGCC-------------ACACAAGGACCTTGGTCTGCGAAAAGGACGACAACAGCCCTAGGTACGCTGACAACGAAGTCAACTCGAACAGCAGCAGACAGCAGCAGCAGCACAAGCATTA-AG-------CACA--TCACCACCACCGCCACGTAGCTC--------------------TCTCTCTCTCACACTCACCACGAACCATCTATATCCCATGCCATCTCTATATCTGTCTGTCGCT-------------------------------------------CGCTCGCTCGATAGCTTAATACTA-TGCCCAT-ATCGCTAGTTAGA------------TAGTCTGTAAGGTCTGTT-TGCTAT-T-GCCGGCT--TTTCTAATTTAAATAATTAAATCATACATGC----AAACC--------ATT----------CGCT
droPer2 scaffold_6:1508503-1508830 + GTGGGGCCCAGCC-------------ACACAAGGACCTTGGTCTGCGAAAAGGACGACAACAGCCCTAGGTACGCTGACAACGAAGTCAACTCGAACAGCAGCAGACAGCAGCAGCAGCACAAGCATTA-AG-------CACA--TCACCACCACCGCCACGTAGCTC--------------------TCTCTCTCTCACACTCACCACGAACCATCTATATCCCATGCCATCTCTATATCTGTCTGTCGCT-------------------------------------------CGCTCGCTCGATAGCTTAATACTA-TGCCCAT-ATCGCTAGTTAGA------------TAGTCTGTAAGGTCTGTT-TGCTAT-T-GCCGGCT--TTTCTAATTTAAATAATTAAATCATACATGC----AAACC--------ATT----------CGCT
droWil2 scf2_1100000004943:7954086-7954362 + GT------CAACC----------AGACCACACGCACTTTGGTCTGTGAAAAGGATGACAACAGCCCTAGGTACGCTGATAGCGAAATCAACTCCAACAGCAG------------GCAGCACAAGTAGT-----CAAAAGAAA-C-G--------------CTTATT-CACT----------------------CACTCACCC---------------------------------AC----TGACTTACTCTCAATA---CTAT----------ATATC---AAAACAATCAGTT----------------T-A---TATCTCCTATAATTCCTAGTTAGC------------TAGTTTGTAAGTTCTAT--TGCTATTTGGCTGGCT-TTATCTAATTTACATAATTAAATCATACATGCGCATAAACC--------TAC----------AACC
droVir3 scaffold_13047:4053371-4053618 + CC------CAGCA-------------CTACACGCACGCTGATCTGCGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCAAACAGCAG------------GCAGCACAAGCACTA-AG-----------CAC--------------CGTAG---TCGCATTAGCTC------GA-------------------------------------------------TA---------------TAATACCTATATATGCATATG------------------------------------------TA-TAAC--T-ATCACTAGTTAGCTAACTAGCTACTTAGCTTATAAGGTCTGT--T----TTT-GCCGGCT--TTTCTAATTAACATAATTACTTCATACATGC----AAACT--------ACA----------AACT
droMoj3 scaffold_6540:21049350-21049600 + ---------AGCA-------------CCACACGCACGCTGATCTGCGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCAAACAGCAG------------GCAGCACAAGCACTA-AG-----------CAC--------------CGTAG---TCGCATTAGCT--------------CGATAATACT-------------------------------------------------TA-------------TGCATATGTATAACTATCACTA---GTTAGTTAG-------------------------------CTAGCTAGC----TAGCTACTTAGCTTGTAAGGTCTGT--TGCTCTTT-GCCGGCT--TATCTAATTAACATAATTACTTCATACATGC----AAACT--------ACA----------AACT
droGri2 scaffold_14906:700903-701184 + GC------CAACTCTCCCTCCGCTCACCACACGCACGCTGATCTGCGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCAAACAGCAG------------GCAGCACAAGCACTA-AG-----------CAC--------------CGTAG---TCGCATTAGCTC------GA----------------------------------------------------------------TAAAA----TACTTATGCATATGTATAACTATAACTA----------------------------TC-AGCA--G-CTAGCTAGTTAGT----TAGCTACTTAGCTTTTAAGGTCTGTTTTGCTATTT-GCCGGCTAATATCTAATTAACATAATTACTTCATACATGC---TACAACTACAAACCAT------------GCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GT------CAGCT-------------CCACCCGCACCGTGGTGTTCGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTAAAGGCCCAAGCACACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................GTAG---ACT----------------------CACTCACCC---------------------------------TCT.........................................................................................................................................................................................................................1913.00300300000000000000
.................................................................................................................................................................GTAG---ACT----------------------CACTCACCC---------------------------------TCTATT......................................................................................................................................................................................................................2213.00300300000000000000
.............................................................................................................................................CACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------T...........................................................................................................................................................................................................................2313.00300300000000000000
.................................................................................................................................................................................................CACTCACCC---------------------------------TCTATTTGTCTGACT.............................................................................................................................................................................................................2412.00200200000000000000
.....................................................................................................................................................................................................CACCC---------------------------------TCTATTTGTCTGACT.............................................................................................................................................................................................................2012.00200200000000000000
.........................................................................................................................................................................................................C---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--.................................................................................................................................2712.00200200000000000000
........................................................................................................................................AAGCACACAG--------------CGTAG---ACT----------------------CACTCACC..............................................................................................................................................................................................................................................................2612.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ATTT-GCCGGCT--TATCTAAT.........................................................1912.00200200000000000000
................................................................................................................................................................................................................................................TTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-...............................................................................................................................2211.00100100000000000000
............................................................................................................................................ACACAG--------------CGTAG---ACT----------------------CACTC.................................................................................................................................................................................................................................................................1911.00110000000000000000
..............................................................................................................................................ACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------T...........................................................................................................................................................................................................................2211.00101000000000000000
..............................................................................................................................................ACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------C...........................................................................................................................................................................................................................2211.00101000000000000000
....................................................................................................................................................................G---ACT----------------------CACTCACCC---------------------------------TCTATTTGTCTGACT.............................................................................................................................................................................................................2811.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................TAGC------------TAGTCTGTAAGGTCT.......................................................................................1911.00100010000000000000
.............................................................................................................................................CACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------............................................................................................................................................................................................................................2211.00100100000000000000
.................................................................................................................................................G--------------CGTAG---ACT----------------------CACTCACCC---------------------------------T...........................................................................................................................................................................................................................1911.00110000000000000000
.................................................................................................................................................................................................................................................TGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-A..............................................................................................................................2211.00101000000000000000
............................ACCCGCACCGTGGTGTTCG........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
............................................................................................................................................ACACAG--------------CGTAG---ACT----------------------CACTCACC..............................................................................................................................................................................................................................................................2211.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................GCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAG...........................................................................................2811.00101000000000000000
......................................................................................................................................................................................................................................................GACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGT......................................................................................................................2511.00100000000100000000
droSec2
GT------CAGCT-------------CCACCCGCACCGTGGTGTTCGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTAAAGGCCCAAGCACACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................GACAACAGCCCGAGGTACGCT...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
......................................TGGTGTTCGAAAAGGACGACA............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
dm3
GT------CAGCT-------------CCACCCGCACCGTGGTGTTCGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTAAAGGCCCAAGCACACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------TCTAATTATCTGACTTTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................TAGTCTGTAAGGTCTGT--TGCTATTT-GC........................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................GATAACGAAGTCAACTCGAACAGCAGA................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................TCTGTAAGGTCTGT--TGCTATTT-GC........................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................T-ATCGCTAGTTAGC------------TAGTCTGTA.............................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CAGAA---------AGCAGCACAAGCATTAAAGGCC................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ACCGTGGTGTTCGAAAAGGACGAC.............................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................ACTCACCC---------------------------------TCTAATTATCTGACTTTT..........................................................................................................................................................................................................2612.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ACGAAGTCAACTCGAACAGCAGAA---------AG....................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TACGCTGATAACGAAGTCAAC............................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AGTCTGTAAGGTCTGT--TGCTA..............................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AACTCGAACAGCAGAA---------AGCAG.................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TTATCTGACTTTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGC..........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AAGGCCCAAGCACACAG--------------C......................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------......................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AGGACGACAACAGCCCGAGGTAC..............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GCACACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------TC..........................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................CAACAGCCCGAGGTACGCTGATAACGA...................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TTAAAGGCCCAAGCACACAG--------------CGTAG---ACT----------------------......................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................A-TGCC--T-ATCGCTAGTTAGC------------T.....................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................A---TA-TGCC--T-ATCGCTAGTTAGC------------T.....................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................CCGTGGTGTTCGAAAAGGACG...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AGC------------TAGTCTGTAAGGTCTGT--TGCT...............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GAACAGCAGAA---------AGCAGCACAAGCATT.......................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................GATAACGAAGTCAACTCG.........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CCCGCACCGTGGTGTTCGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CACACAG--------------CGTAG---ACT----------------------CACT..................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TAGTTAGC------------TAGTCTGTAAGGTCTGT--...................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CGAGGTACGCTGATAACG....................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GC------------TAGTCTGTAAGGTCTGT--TGCT...............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AAGGACGACAACAGCCCGAGGTACGC............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................CAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------TCTAAT......................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................ACTCACCC---------------------------------TCTAATTATCTGACA.............................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................C--T-ATCGCTAGTTAGC------------TAGT..................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................................................AGTCTGTAAGGTCTGT--TGC................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CGAAGTCAACTCGAACAGCAG.................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--...................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CACACAG--------------CGTAG---ACT----------------------CACTCACCC---------------------------------TC..........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TAGTCTGTAAGGTCTGT--TGCTATT............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GTGGTGTTCGAAAAGGACGAC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................GAGGTACGCTGATAACGAA..................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AGC------------TAGTCTGTAAGGTCTGT--T..................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GTACGCTGATAACGAAGT................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................TAAAGGCCCAAGCACACAG--------------CGTAG---AC.............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AAAGGACGACAACAGCCCGA...................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GAACAGCAGAA---------AGCAGCACAAG...........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................AGCAGAA---------AGCAGCACAAGCAT........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................CTCGAACAGCAGAA---------AGCAGCACA.............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TAGTTAGC------------TAGTCTGTAAGG..........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................T-ATCGCTAGTTAGC------------TAGTCTGTAAGG..........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................CCGAGGTACGCTGATAACGAAGTCAAC............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
................................GCACCGTGGTGTTCGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CGAACAGCAGAA---------AGCAGCACAAG...........................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................CGAACAGCAGAA---------AGCAGCACAAGCATT.......................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................CAACAGCCCGAGGTACGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................AGCCCGAGGTACGCTGATAACGAA..................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AAAGGCCCAAGCACACAG--------------CGTAG---AC.............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................AGCACACAG--------------CGTAG---ACT----------------------CACTCA................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................ACAGCCCGAGGTACGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................ATAACGAAGTCAACTCGAACAGCAGA................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................ATCGCTAGTTAGC------------TAGTCTGTA.............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CCCAAGCACACAG--------------CGTAG---ACT----------------------C.....................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CTGT--TGCTATTT-GCCGGCT--.................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................CCCGCACCGTGGTGTTCGAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CAGCACAAGCATTAAAGGC.................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GTCTGT--TGCTATTT-GCCGGCT--.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CAGCAGAA---------AGCAGCACAAGCATTA......................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................ACAGCCCGAGGTACGCTG..........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TGCTATTT-GCCGGCT--TATCT............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................GCCCAAGCACACAG--------------CGGC...................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GT------CAGCT-------------CCACCCGCACAGTGGTGTTTGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACACAG--------------CGTAG---ACG----------------------CTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................CAACAGCCCGAGGTACGCT...........................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.................................CACAGTGGTGTTTGAAAAGGACGAC.............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
.................................................................CGAGGTACGCTGATAACGAAGT................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.................................................................................................................................................................................................................................................................................................................................................TAGC------------TAGTCTGTAAGGTCT.......................................................................................1911.0011000000
.......................................GGTGTTTGAAAAGGACGACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
.......................................................GACAACAGCCCGAGGTACGCT...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...................................CAGTGGTGTTTGAAAAGGACGACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
........................................................................................................................................AAGCACACAG--------------CGTAG---ACG----------------------CTCT..................................................................................................................................................................................................................................................................2211.0011000000
..........................................................AACAGCCCGAGGTACGCTGATAACGAA..................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
................................GCACAGTGGTGTTTGAAAAGGACGAC.............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
droYak3
GT------CAGCT-------------CCACCCGCACCGTGGTGTTTGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACACAG--------------CGTAG---ACT----------------------CTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................ATTA-AGGCCCAAGCACACAG--------------CGTA...................................................................................................................................................................................................................................................................................................2412.00200000020000
...........................................................................................................................................................................................................................................TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-...............................................................................................................................2711.00110000000000
....................................................................GGTACGCTGATAACGAAGT................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.......................................................................................CAACTCGAACAGCAGAA---------AGC...................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............................................................................................................................................ACACAG--------------CGTAG---ACT----------------------CTCTCACCC---------------------------------T...........................................................................................................................................................................................................................2411.00100000010000
.................................................................CGAGGTACGCTGATAACGAAGT................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
................................GCACCGTGGTGTTTGAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................TATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--.................................................................................................................................2411.00110000000000
...........................................................................................................................................................................................................................................................TTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTT.....................................................................................................................2111.00101000000000
droEug1
GT------CAGCT-------------CCACCCGCACCGTGGTGTATGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACACAG--------------CGTAG---ACT----------------------CTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotal
No Reads
droBia1
GT------CAGCT-------------CCACCCGCACCGTGGTCTTTGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCCAGCACACAG--------------CGTAG---ACT-----GCTCCACTAC------TCTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------ATA-TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATCT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATT----------CGCCSizeHit CountTotal NormTotal
No Reads
droTak1
--------CAGCT-------------CCACCCGCACCGTTGTCTTCGAAAAGGACGACAACAGCCCGAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCCAGCACAC----------------------------------------------------------------------------------------------ATTTGTCTGACTCTTAACA----TAC-------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGTT-TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----CAACC--------ATC----------CGCCSizeHit CountTotal NormTotal
No Reads
droEle1
GT------CAGCT-------------CCACCCGCACCGTGGTCTTCGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACCCAG--------------CATAG---ACT--------------CTATCTATCTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGCCAGTTAGC----TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotal
No Reads
droRho1
GT------TAGCT-------------CTACCCGCACCGTGGTCTTTGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACCCAG--------------CATAG---ACT----------------------CTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotal
No Reads
droFic1
GT------TAGCT-------------CCACACGCACCGTGGTCTACGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAA---------AGCAGCACAAGCATTA-AGGCCCAAGCACCCAG--------------CGTAGTAGACT--------------C------TCTCTCACCC---------------------------------TCTATTTGTCTGACTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGT--TGCTATTT-GCCGGCT--TATCTAATTTAAATAATTAAACCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotal
No Reads
droKik1
GT------GAGCA-------------CCACGCGGACCGTGGTCTTTGAAAAGGAAGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAC---------AGCAGCACAAGCATTA-AGGCCCAAGCAC--AG--------------CGTAG---ACT--------------C------TCTCTCACCC---------------------------------TCTAGTTGTCCGCCTCTTA-----------------------------------------------------------A---TATCGCC--T-ATCGCTAGTTAGCTA----------TAGTCTGTAAGGTCTGT--TGCTAT-T-GCCGGCT--TATCTAATTTAAATAATTAAATCATACATGC----AAACC--------ATCCACCATCCGCCGCCSizeHit CountTotal NormTotal
No Reads
droAna3
GT------CAGCA-------------CCACTCGCACCGTGGTCTATGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAC---------AGCAGCACAAGCATTA-AGGCCCAAGCACC--------------------------------------------A---------------------------TCC-----------------AAACATTATCCGCCTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGTT-TGCTAT-T-GCCGGCT--TATCTAATTTAAATAATTAAATCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................CAGCAGAC---------AGCAGCACAAGCA.........................................................................................................................................................................................................................................................................................................................................2112.002000002
..................................................AGGACGACAACAGCCCTAGGTACGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
...........................................................................................TCGAACAGCAGAC---------AGCAGC................................................................................................................................................................................................................................................................................................................................................1911.001000001
................................GCACCGTGGTCTATGAAAAGGACGAC.............................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...........................................TATGAAAAGGACGACAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................................................................................................................................CC--------------------------------------------A---------------------------TCC-----------------AAACATTATCCGCCTCT...........................................................................................................................................................................................................2311.001100000
....................................................GACGACAACAGCCCTAGGTACG.............................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..................................................................TAGGTACGCTGATAACGAAGTCA..............................................................................................................................................................................................................................................................................................................................................................................2311.001000001
.........................................................................................ACTCGAACAGCAGAC---------AGCAGCACA.............................................................................................................................................................................................................................................................................................................................................2411.001100000
.........................................................................................ACTCGAACAGCAGAC---------AGCAGCACAA............................................................................................................................................................................................................................................................................................................................................2511.001000001
..........................................................................................................................AGCATTA-AGGCCCAAGCACC--------------------------------------------............................................................................................................................................................................................................................................................................2011.001000001
.............................................................................................................................................................................................................................................................................................................................TA-TGCC--T-ATCGCTAGTTAGC------------TA....................................................................................................2211.001000001
.............................................................AGCCCTAGGTACGCTGATAAC.....................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................ACTCGAACAGCAGAC---------AGCAGC................................................................................................................................................................................................................................................................................................................................................2111.001000001
..................................................................................GAAGTCAACTCGAACAGCAGAC---------AGCAGC................................................................................................................................................................................................................................................................................................................................................2811.001100000
droBip1
GT------CAGCA-------------CCACTCGCACCGTGGTCTATGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCGAACAGCAGAC---------AGCAGCACAAGCATTA-AGGCCCAAGCACAC--------------------------------------------------------CC---------------------------------AAACATTATCCGCCTCTTA-----------------------------------------------------------A---TA-TGCC--T-ATCGCTAGTTAGC------------TAGTCTGTAAGGTCTGTT-TGCTAT-T-GCCGGCT--TATCTAATTTAAATAATTAAATCATACATGC----AAACC--------ATC----------CGCCSizeHit CountTotal NormTotal
No Reads
dp5
GTGGGGCCCAGCC-------------ACACAAGGACCTTGGTCTGCGAAAAGGACGACAACAGCCCTAGGTACGCTGACAACGAAGTCAACTCGAACAGCAGCAGACAGCAGCAGCAGCACAAGCATTA-AG-------CACA--TCACCACCACCGCCACGTAGCTC--------------------TCTCTCTCTCACACTCACCACGAACCATCTATATCCCATGCCATCTCTATATCTGTCTGTCGCT-------------------------------------------CGCTCGCTCGATAGCTTAATACTA-TGCCCAT-ATCGCTAGTTAGA------------TAGTCTGTAAGGTCTGTT-TGCTAT-T-GCCGGCT--TTTCTAATTTAAATAATTAAATCATACATGC----AAACC--------ATT----------CGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................TCAACTCGAACAGCAGCAGACAGCAG.......................................................................................................................................................................................................................................................................................................................................................2611.0010000000100
.......................................................GACAACAGCCCTAGGTACGCT...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................ATATCTGTCTGTCGCT-------------------------------------------CGCTC...........................................................................................................................................................2111.0010100000000
.........................................TCTGCGAAAAGGACGACAACAGCCCTAG..................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AATTAAATCATACATGC----AAACC--------.................2211.0010010000000
.......................................................................................CAACTCGAACAGCAGCAGACAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................2911.0010000000001
......................................................CGACAACAGCCCTAGGTACGCTGAC........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010000
.......................................................................................CAACTCGAACAGCAGCAGA.............................................................................................................................................................................................................................................................................................................................................................1911.0010000000001
..........................................................AACAGCCCTAGGTACGCTGAC........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.......................................................................................CAACTCGAACAGCAGCAGACAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................2811.0010000000001
.......................................................................................CAACTCGAACAGCAGCAGACAGC.........................................................................................................................................................................................................................................................................................................................................................2311.0010000000001
...............................................................................AACGAAGTCAACTCGAACAGCAGCAGA.............................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
.....................................................................................GTCAACTCGAACAGCAGCAGACAGC.........................................................................................................................................................................................................................................................................................................................................................2511.0010000000001
...............................................................................AACGAAGTCAACTCGAACAGCAG.................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................................................................................................ACAGCAGCAGCAGCACAAG...........................................................................................................................................................................................................................................................................................................................................1950.2010100000000
.....................................................................................................GCAGACAGCAGCAGCAGCC...............................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
GTGGGGCCCAGCC-------------ACACAAGGACCTTGGTCTGCGAAAAGGACGACAACAGCCCTAGGTACGCTGACAACGAAGTCAACTCGAACAGCAGCAGACAGCAGCAGCAGCACAAGCATTA-AG-------CACA--TCACCACCACCGCCACGTAGCTC--------------------TCTCTCTCTCACACTCACCACGAACCATCTATATCCCATGCCATCTCTATATCTGTCTGTCGCT-------------------------------------------CGCTCGCTCGATAGCTTAATACTA-TGCCCAT-ATCGCTAGTTAGA------------TAGTCTGTAAGGTCTGTT-TGCTAT-T-GCCGGCT--TTTCTAATTTAAATAATTAAATCATACATGC----AAACC--------ATT----------CGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................GTCAACTCGAACAGCAGCAGAC............................................................................................................................................................................................................................................................................................................................................................2212.002200000
..................................................................................................................................................................................................................................................GTCTGTCGCT-------------------------------------------CGCTCGCTCG......................................................................................................................................................2012.002200000
................................................................................................CAGCAGCAGACAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................................................................................................................................................................ATATCTGTCTGTCGCT-------------------------------------------CGCT............................................................................................................................................................2011.001100000
.............................CAAGGACCTTGGTCTGCGAAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.................................GACCTTGGTCTGCGAAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................GCT-------------------------------------------CGCTCGCTCGATAGC.................................................................................................................................................1811.001010000
............................................................................................................................................................................................................................................ATATCTGTCTGTCGCT-------------------------------------------CGCTC...........................................................................................................................................................2111.001010000
droWil2
GT------CAACC----------AGACCACACGCACTTTGGTCTGTGAAAAGGATGACAACAGCCCTAGGTACGCTGATAGCGAAATCAACTCCAACAGCAG------------GCAGCACAAGTAGT-----CAAAAGAAA-C-G--------------CTTATT-CACT----------------------CACTCACCC---------------------------------AC----TGACTTACTCTCAATA---CTAT----------ATATC---AAAACAATCAGTT----------------T-A---TATCTCCTATAATTCCTAGTTAGC------------TAGTTTGTAAGTTCTAT--TGCTATTTGGCTGGCT-TTATCTAATTTACATAATTAAATCATACATGCGCATAAACC--------TAC----------AACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................CACGCACTTTGGTCTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
.....................................TTGGTCTGTGAAAAGGATGACAACAGCCC.....................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000
..........................................CTGTGAAAAGGATGACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
..........................CCACACGCACTTTGGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAAATCATACATGCGC................................2111.00100010
.....................................TTGGTCTGTGAAAAGGATGACA............................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
.....................................TTGGTCTGTGAAAAGGATGA..............................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
........CAACC----------AGACCACACGCACTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
droVir3
CC------CAGCA-------------CTACACGCACGCTGATCTGCGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCAAACAGCAG------------GCAGCACAAGCACTA-AG-----------CAC--------------CGTAG---TCGCATTAGCTC------GA-------------------------------------------------TA---------------TAATACCTATATATGCATATG------------------------------------------TA-TAAC--T-ATCACTAGTTAGCTAACTAGCTACTTAGCTTATAAGGTCTGT--T----TTT-GCCGGCT--TTTCTAATTAACATAATTACTTCATACATGC----AAACT--------ACA----------AACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................AGCAG------------GCAGCACAAGCACTA-.....................................................................................................................................................................................................................................................................................................................................2012.002001000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ATGCATATG------------------------------------------TA-TAAC--T-ATCACTA........................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................A---------------TAATACCTATATATGCATATG------------------------------------------T.........................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.........................................................CAACAGCCCTAGGTACGCT...........................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
.......................................................GACAACAGCCCTAGGTACGCTGATAA......................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................C--T-ATCACTAGTTAGCTAACT.............................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................AACAGCAG------------GCAGCACAAGCA.........................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AG---TCGCATTAGCTC------GA-------------------------------------------------TA---------------TAATACCT.................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................AGCACTA-AG-----------CAC--------------CGTAG---TCGCA..........................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
.........AGCA-------------CTACACGCACGCTGATCTGCGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................CAAACAGCAG------------GCAGCACAAGCACTA-.....................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................G------------------------------------------TA-TAAC--T-ATCACTAGTTAGCT.................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATATATGCATATG------------------------------------------TA-TAAC--T-ATC............................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................CATTAGCTC------GA-------------------------------------------------TA---------------TAATACCTA................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................ATAACGAAGTCAACTCAAAC......................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................G-----------CAC--------------CGTAG---TCGCATTAGCTC------GA-------------------------------------------------TA---------------T........................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AATTAACATAATTACTTCATACATGC----A.............................2711.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TG------------------------------------------TA-TAAC--T-ATCACTAGTT.....................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
..............................................GAAAAGGACGACAACAGCC......................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................AGCTC------GA-------------------------------------------------TA---------------TAATACCTAT...............................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CTAGCTACTTAGCTTATAAGGTCT.......................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................AGTCAACTCAAACAGCAG------------GC...................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TCTAATTAACATAATTACTTCATACA.....................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................GAAAAGGACGACAACAGCCCTAGGTA...............................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
---------AGCA-------------CCACACGCACGCTGATCTGCGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCAAACAGCAG------------GCAGCACAAGCACTA-AG-----------CAC--------------CGTAG---TCGCATTAGCT--------------CGATAATACT-------------------------------------------------TA-------------TGCATATGTATAACTATCACTA---GTTAGTTAG-------------------------------CTAGCTAGC----TAGCTACTTAGCTTGTAAGGTCTGT--TGCTCTTT-GCCGGCT--TATCTAATTAACATAATTACTTCATACATGC----AAACT--------ACA----------AACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................CT--------------CGATAATACT-------------------------------------------------TA-------------TGCATATGT...................................................................................................................................................................................2312.002000002
...........................................................................................................................................................................................................................................................................................................................................................GCTACTTAGCTTGTAAGGTCTGT--TGCTC..............................................................................2811.001000010
............................................................................................................................................................................................................................................................................GCATATGTATAACTATCACTA---...................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................AATTAACATAATTACTTCATACATGC----..............................2611.001100000
droGri2
GC------CAACTCTCCCTCCGCTCACCACACGCACGCTGATCTGCGAAAAGGACGACAACAGCCCTAGGTACGCTGATAACGAAGTCAACTCAAACAGCAG------------GCAGCACAAGCACTA-AG-----------CAC--------------CGTAG---TCGCATTAGCTC------GA----------------------------------------------------------------TAAAA----TACTTATGCATATGTATAACTATAACTA----------------------------TC-AGCA--G-CTAGCTAGTTAGT----TAGCTACTTAGCTTTTAAGGTCTGTTTTGCTATTT-GCCGGCTAATATCTAATTAACATAATTACTTCATACATGC---TACAACTACAAACCAT------------GCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................CTA-AG-----------CAC--------------CGTAG---TCGCATTA.......................................................................................................................................................................................................................................................................................2111.00110
................................GCACGCTGATCTGCGAAAAGGACGAC.............................................................................................................................................................................................................................................................................................................................................................................................................2611.00110

Generated: 05/18/2015 at 09:51 AM