ID:dsi_22346 |
Coordinate:3r:17644173-17644322 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
intergenic
No Repeatable elements found
|
CGCCTGTTCGGCCAGCTCCGTGGAAAGTTTGCCCAGCGCATCCGGTTCGAGTAAGTATACGAATACGAGTACGGATAGGGATAGGGATAGCAATGGAGTTGCGGATACGGATACGGGGGTTGTAGATACACAACCGGGACTGCCTGTGTATCTTTGTCTGAGCTGGCAATTTAGAGTTTTTGGGCTTTGATTTCGCCAGCTGCAGGAGCAAGCCGTCTGCTGGATGCTCCTTTCCTTCCCGATGGCCATG
**************************************************((..((((.((....)).))))..))..(((((((((((.((..((((((.(((...((....))....((((......))))))).)))).))..)))))))))))))..((((((((.((((((((....)))))))).)).))))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
GSM343915 embryo |
SRR618934 dsim w501 ovaries |
SRR553485 Chicharo_3 day-old ovaries |
M024 male body |
|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................CGGGTGTTGTAGATA.......................................................................................................................... | 15 | 1 | 8 | 5.00 | 40 | 33 | 7 | 0 | 0 | 0 | 0 |
| .................................................................................................................CGGGGGTTGTAGACA.......................................................................................................................... | 15 | 1 | 3 | 1.67 | 5 | 5 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................ATACCGGGGTTGTAGACA.......................................................................................................................... | 18 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........CGGCCAGCTCCGTGGAAAGTTTGC.......................................................................................................................................................................................................................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...............................................................................................................TACCGGGGTTGTAGACA.......................................................................................................................... | 17 | 2 | 6 | 0.83 | 5 | 5 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................GAATACCGGGGTTGTAGACA.......................................................................................................................... | 20 | 3 | 4 | 0.75 | 3 | 2 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................................CCGGGGGTTGTAGACA.......................................................................................................................... | 16 | 2 | 17 | 0.29 | 5 | 5 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................GTACCGATAGGGATA....................................................................................................................................................................... | 15 | 1 | 4 | 0.25 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .GCCTGTTCGGCCAGGACC....................................................................................................................................................................................................................................... | 18 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ........................................................................................................................................................................ATTTATAGTTATTGGGCTT............................................................... | 19 | 2 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................................................................................................................GGGACTGCCTGTGTT.................................................................................................... | 15 | 1 | 7 | 0.14 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................TTTGTCAGAGCTGGC................................................................................... | 15 | 1 | 7 | 0.14 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................................................CCAGGGACTGCCTGTG...................................................................................................... | 16 | 2 | 20 | 0.10 | 2 | 0 | 2 | 0 | 0 | 0 | 0 |
| ............................................................................................................GGATACCGGGGATGTAGCT........................................................................................................................... | 19 | 3 | 10 | 0.10 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................................................................................................................ACCGGGGTTGTAGACA.......................................................................................................................... | 16 | 2 | 20 | 0.10 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................ACGGATACGGGGGAT................................................................................................................................. | 15 | 1 | 12 | 0.08 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................ATACGGATAGGGGGTTCGT............................................................................................................................... | 19 | 3 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..................................................................................................................................................................................................GCCAGCTTCAGGAGC......................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...................................................................................................TGCGGATCCGGATACG....................................................................................................................................... | 16 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
|
GCGGACAAGCCGGTCGAGGCACCTTTCAAACGGGTCGCGTAGGCCAAGCTCATTCATATGCTTATGCTCATGCCTATCCCTATCCCTATCGTTACCTCAACGCCTATGCCTATGCCCCCAACATCTATGTGTTGGCCCTGACGGACACATAGAAACAGACTCGACCGTTAAATCTCAAAAACCCGAAACTAAAGCGGTCGACGTCCTCGTTCGGCAGACGACCTACGAGGAAAGGAAGGGCTACCGGTAC
**************************************************((..((((.((....)).))))..))..(((((((((((.((..((((((.(((...((....))....((((......))))))).)))).))..)))))))))))))..((((((((.((((((((....)))))))).)).))))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
|---|---|---|---|---|---|---|---|---|
| ..................................TCGCGTAGGCGAAGCT........................................................................................................................................................................................................ | 16 | 1 | 4 | 0.25 | 1 | 0 | 1 | 0 |
| ..........AGGTCGAGGGACCATTCAAA............................................................................................................................................................................................................................ | 20 | 3 | 8 | 0.13 | 1 | 0 | 0 | 1 |
| ......................................................................................................................................................................................................................................AAGTGAAGGGCTACCGG... | 17 | 2 | 20 | 0.10 | 2 | 2 | 0 | 0 |
| ......................................................................................................................................................................................................................................AAGTGAAGGGCTACCGGT.. | 18 | 2 | 13 | 0.08 | 1 | 1 | 0 | 0 |
| ..........................................................................................................................................................................................................................................GAAGGGCTACCGGTG. | 15 | 1 | 13 | 0.08 | 1 | 1 | 0 | 0 |
| .......................................................................................................................................................................................................................................AGTGAAGGGCTACCGGT.. | 17 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 |
Generated: 04/24/2015 at 12:37 AM