ID:

dsi_22333

 Coordinate:

3l:568168-568345 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.1 -15.1 -15.0

Flybase annnotation

five_prime_UTR [3l_567959_568536_-]; exon [3l_567905_568536_-]

No Repeatable elements found

Sense Strand Reads

######################################################################################################################################################################################################################################################################################
TAGTTTGTTTAACCATTTGCGTGCGACACTCGCCTTGGGGCAAGTTTGAGGTATTTTCCAAGTTGGCATTATTGTAATTAGCCTGTCCGTAGAGACTACGAATCGAGACGAACAAAAATAAAACGCAGAATAATTGCGCTGGAAATAATGTGCGCGGCTAAAAGCGCTAACGTAACGGCTAAATAATAGTAGAAAGTTTTTATTGTTATCTCTTCTTCTGAGCCGCAGCTGCCAAAAACCGAACAACCATAGCAAGAGCTTTGAAATTTTGCGTGTGA
******************************************************************************************.....((((...(((...)))............(((((.....))))).(((.....((((((((........))))..)))).....))).......)))).....********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M023
head
..........................................................................................AGAGACTACGAATCGAGACGAACAAA.................................................................................................................................................................. 26 0 1 2.00 2 1 0 0 0 1 0 0
..............................................................................................................................................................................ACGGCTAAATAATAGTAGAAAGT................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TTGAAATTTTGCGTGTGA 18 0 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................AGAGCTTTGAAATTTTGC...... 18 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................AGAGACTACGAATCGAGAC......................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................AGAGACTACGAATCGAGACG........................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
................TTGCGTGCGACACTCGCCTTGG................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................ATCGAGACGAACAAAAATAAAACGC........................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0
.............CATTTGCGTGCGACACTCGCCTTGGGGC............................................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................CGACCATAGCAAGAG.................... 15 1 2 0.50 1 0 0 0 0 0 1 0
..................................................................................................................................................................AACGCTAAGGTAACGGCT.................................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................CCTGACGACCATAGCAAG...................... 18 3 20 0.10 2 0 0 0 0 0 0 2
...............................................................................AGCCTGTACGTCGAGA....................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

ATCAAACAAATTGGTAAACGCACGCTGTGAGCGGAACCCCGTTCAAACTCCATAAAAGGTTCAACCGTAATAACATTAATCGGACAGGCATCTCTGATGCTTAGCTCTGCTTGTTTTTATTTTGCGTCTTATTAACGCGACCTTTATTACACGCGCCGATTTTCGCGATTGCATTGCCGATTTATTATCATCTTTCAAAAATAACAATAGAGAAGAAGACTCGGCGTCGACGGTTTTTGGCTTGTTGGTATCGTTCTCGAAACTTTAAAACGCACACT
*********************************************************************************.....((((...(((...)))............(((((.....))))).(((.....((((((((........))))..)))).....))).......)))).....****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.................................................................CGTAATAACATTAATCGGACAGGCAT........................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................AATAACATTAATCGGACAGGCATCT......................................................................................................................................................................................... 25 0 1 2.00 2 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................................TGGCTTGTTGGTATCGTTCTCGAAACT.............. 27 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................................................ATCTCTGATGCTTAGCTCTGCTTGTTT.................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0
....................................................................AATAACATTAATCGGACAGGCATCTC........................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................TTGGCTTGTTGGTATCGTTCTCGAAA................ 26 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGGCGTCGACGGTTTTTGGCTTGT................................. 24 0 1 1.00 1 0 0 0 1 0 0 0
......................................................................................................AGCTCTGCTTGTTTTTATTTTGCGT....................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
.....................ACGCTGTGAGCGGAACCCCGTTCAAACT..................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................AACCGTAATAACATTAATCGGACAGGCAT........................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0
.....................ACGCTGTGAGCGGAACCCGGTTCAAACT..................................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................CGGTTTTTGGCTTGTTGG.............................. 18 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................................TCGGACAGGCATCTCTGA..................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0
.............................................................................................................................................................................................................AATAGAGAAGAAGACTCGGCGTCGACGGT............................................ 29 0 1 1.00 1 0 0 0 1 0 0 0
..................................................................................................................................................................TCGCGATTGCATTGCCGATTTATTATCAT....................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................AGACTCGGCGTCGACGGTTTTTGGCTT................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................CTGCTTGTTTTTATTTTGCGTCTTAT.................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................AGACTCGGCGTCGACGGTTTT......................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................CGACGGTTTTTGGCTTGTTGGTAT........................... 24 0 1 1.00 1 0 0 1 0 0 0 0
................AAGGCGCGCTGTGATCGGAA.................................................................................................................................................................................................................................................. 20 3 2 0.50 1 0 0 0 0 0 1 0
.................................................................CGTAATAACATTAAT...................................................................................................................................................................................................... 15 0 2 0.50 1 0 0 1 0 0 0 0
................................................................................................ATGCTTAGCTCCGCT....................................................................................................................................................................... 15 1 12 0.25 3 1 0 0 0 0 1 1
....................................................................................................................................................................................................................AAGAAGACTAGGCGTC.................................................. 16 1 5 0.20 1 0 1 0 0 0 0 0
...........................TGAGTAGAGCCCCGTTCAAA....................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................AGAAGACTAGGCGTC.................................................. 15 1 20 0.20 4 0 0 1 0 0 3 0
...........................................................................................................................................................................................................AGAAGAGAGAAGAAGACT......................................................... 18 2 18 0.06 1 0 0 1 0 0 0 0
.............................ACCGGAACCCTGTTCA......................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0
................................................................................................ATGCTTAGCCCTGCTG...................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
......................GGCTGGGAGCGGAACC................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:568118-568395 - dsi_22333 TA-GTTTG--------------TTTA-------ACCATTTGCGTGCGACACTCGCCTTG----GG--GCAAGTT--------TGAGGTATTTTCCAAGTTGGCATTATTGTAATTAGCCTG--TCCG----------------------T------------AGA--------G-ACT------------------------ACGAATCGAGAC--------GAACA---A---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCGAACAACCA--TA-----G-----C----AA--GAG---------------------------------C-----------------------------------TTTG-AAA------TTTTGCGTGT-GA
droSec2 scaffold_2:623769-624046 - TA-GTTTG--------------TTTA-------ACCATTTGCGTGCGACACTCGCCTTG----GG--GCAAGTT--------TGAGGTATTTTCCAAGTTGGCATTATTGTAATTAGCCTG--TCCG----------------------T------------AGA--------G-ACT------------------------ACGAATCGAGAG--------GAACA---A---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCGAACAACCA--TA-----G-----C----AA--GAG---------------------------------G-----------------------------------TTTG-AAA------TTTTGCGTGT-GA
dm3 chr3L:603581-603859 - TA-GTTTA--------------TTTA-------ACCATTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------TGAAGTATTTTCCAAGCTGGCATTATTGTAATTAGCCTG--TCCG----------------------T------------AGA--------G-ACT------------------------ACGAATCGAGAC--------AAACA---A---------------------TA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGTTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCGAACAACCA--TA-----G-----C----AA--GAG---------------------------------C--------T--------------------------TTTA-AAA------TTTTGCGTGT-GA
droEre2 scaffold_4784:606107-606384 - TA-TTTTG--------------TTTA-------ACCAATTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------TGAGGTATTTTCCAAGTTGGCATTATTGTAATTAGCCTG--TCCG----------------------T------------GGA--------G-ACT------------------------ACGAAACGAGAC--------GAACA---A---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCGAACAACCA--TA-----G-----C----AA--GAG---------------------------------C-----------------------------------TTTA-TAA------TTTTGCGTGT-GA
droYak3 3L:586428-586725 - TT-GTTTGGCCATTTTAGCCATTTTA-------ACCATTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------TGAGGCATTTTCCAAGTTGGCATTATTGTAATTAGCCTG--TCCG------------------TCCGT------------AGA--------G-ACT------------------------ACAAAACGAGAC--------GAACAC-AA---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTTT---TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCGAACAGCCA--TA-----G-----C----AA---AG---------------------------------C-----------------------------------TTTA-AAA------TTTTGCGTGT-GA
droEug1 scf7180000409184:627090-627376 - TTATTTCA--------------TTTG-------CCCATTTGCGTGCGACAATCGCCTTG----GG--CCAAGTT--------TGAGTTAGTTTCCAAGTTTGCATTATTGTAATTAGCCTG--TCCG------------------------------------GC--------G-ACT------------------------ACGAAACGAAAC--------GTAT--AAA---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAGCCGAATAACCA--TA-----G-----C----AA--AACCAG---CAAAAC---------------------C-----------------------------------GTCG-AAA------TTTTGCGTGT-GA
droBia1 scf7180000300910:674624-674897 - TA-GTTTG--------------TTTA-------CCCATTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------GGAGCCGTTTTCC-AGTTTGCATTATTGTAATTAGCCCG--CCCG----------------------T------------CGG--------G-ACT------------------------GCGAAACGAAAC--------GAATA---A---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAGAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTT-----TTATTGTTA--------------TCTTCTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAGCCGAACGACCA--TA-----G-----C----AA--AA----------------------------------C-----------------------------------TTCG--AA------TTTTGCGTGT-GA
droTak1 scf7180000415846:81863-82148 + TTATTTTA--------------TTTA-------CCCATTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------TGAGTTAT-TTCCAAGTTTGCATTATTGTAATTAGCCTG--TCGG------------------CCCGT--CG--------AGA--------G-ACT------------------------ACGAAACGAAAC--------GAAT--GAA---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA-------------TA-TAATGTGCG-----C-----GGCTAAGAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCT-TTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAGCCGAAAAACCA--TA-----G-----C----AA--AAG---------------------------------C-----------------------------------TTCG-AAA------TTTTGCGTGT-GA
droEle1 scf7180000491249:740225-740525 - TA-CTCTA--------------TTTG-------CCCATTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------AGAGAC-TTTTCCAAGTTTGCCTTATTGTAATTAGGCTG--TCAG------------------ACTGT--CT--------AACGACTGACTG-GCT------------------------ACGAAACAAAAC--------GTAT--AAA---------------------AA-ATAAAACGCAGAATAATTGCGCTGGATA-------------TA-TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCAAATAACCA--AA-----G-----C----AAA-AAG---------------------------------C-----------------------------------TTTG-AAGTTTTAGTTTTGCGTGT-GA
droRho1 scf7180000765857:18494-18776 - TTATTTTA--------------TTTA-------CCCGTTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------TGAGCTATTTCTCAAGTTTGCATTATTGTAATTAGCCCG--TCCG----------------------T------------C----------G-ACT------------------------ACGAAACGAAAC---GAAACGAAT--AAA---------------------TA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCCAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCAAATAACCA--AA-----G-----C----AA--AAG---------------------------------C-----------------------------------TTTG-AAG------TTTTGCGTGT-GA
droFic1 scf7180000453052:652706-652985 + TAATTTCG--------------TTTA-------CCCATTTGCGTGTGACACTCGCCTTG----GG--CCAAGTT--------TGAGTTAC-TTCCAAGTTTGCATTATTGTAATTAGCCTG--TCGT----------------------T------------C----------G-ACT------------------------ACGAAACGAAAC--------GAATATAAG---------------------AT-ATAAAACGCAGAATAATTGCGGTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTTT--TTTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACTAAATAACCA--AA-----G-----C----AA--AAG---------------------------------C------------------------------------TCG-AAA------TTTTGCGTGT-GA
droKik1 scf7180000301710:387761-388127 - TT-GTTTATGTGT--------TTTTACCCCACGACCATTTGCGTGCGACGTTCGCCTTG----GGGGCCCAGTTAGTTGAGCTGAGTTAT-TTCCAAGTTTGCATTATTGTAATTAGCCTG--GCAGTCAGCTGCCTCG-------CC-TC-----GAGTGT---------CCGCGCTAC-----------------------CGAAATAAAACCTAGAAAAAGAT--AAA-----------------AGTAAACCTAAAACGCAGAATAATTGCGCTGGAAGTGG-------AAATGGAAATGTGCG-----C-----GGCTAAATGG-------------------------CGCTAACGTATAACGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCTTCGGCTGGCGAAGC----------------------------------------------GCAGCTGCCAAAAACCAAATAACCA--AG-----G-----C----AA--AAG-----------CCGT----------------AGC------------------------------------TTC-AAA------TTTTGCGTGT-GA
droAna3 scaffold_13337:2097018-2097370 + TT-AGTTA--------------TTTG-------GCCATTTGCGTGCG-CGTTTACCTTG----GG--GCG-GT--------------CGGTCTCCAAGTTGGAATTATTGTAATTAC-CTC--TCC-----------------------TCG--ACAAGTGT---------CCG--CC------------------------AC-AAACG-------------AAT--GAA-A----------TAA-AATTAAA-ATAAAACGCAGAATAATTACGCTGCAGCTGGAGCTTGGGAATGGAAATGTGCG-----C---GCGTCTAAACGGCAAAA-AAGCA-----AAACGGCAACGCTAA-------CGTAACGGCTAAATAATCGTAGAAAGTTT----TTATTGTTA--------------TCGCTTCTTCT-GA--------GCC----TCCAGTCTGAGCCAGAGTCAGAGCAAGAGTCAGAGCCAATCCGGAGCTGCCAAAAACCGAA-AGCCA--AA-----C-----C----AA----------------------------------------------------------------------------CA-AAT------TTTTGCGTGC-CA
droBip1 scf7180000396569:2134892-2135247 + CAGTTTCA-----------------G-------CTCATTTGCGTGCG-CGGTTACCTTG----GG--GC----------------GGCCGTCTCC-AGTTGGAATTGTTGTAATTAC-CTC--TCG----------------------------ACAAGTGT---------CCG--CC------------------------AC-AAACGAAAC--------GA-T--AAA-----------------ATTAAA-ATAAAACGCAGAATAATTACGCTGCAGCTGGAGCTTGGGAATGGAAATGTGCG-----CGTCGCGTCTAAACGGCAGCAGCGACAAGA------GGCAACGCTAA-------CGTAACGGCTAAATAATCGTAGAAAGTTT----TTATTGTTA--------------TCGCTTCTTCT-GA--------GCCAGA-----GCCTGAGCCAGAGCCAGGGC------------------AGAGCTGCCAAAAACCGAA-AGCCA--AAAA---------CCCGA--AA--A--GCAAATAATCCA-----------------AGC--------TCA------------------------GGCC-AAT------TTTTGCGTGCCGG
dp5 XR_group3a:761307-761668 + TT-GT-TG--------------TGAA-------TCCATTTGCGTGCCGTAGTCGCCTTGCCTGG------------------------------------------GTCGTAATTACGTGG--TCAG----CTG---AG-------CC-CC-----GAGTCT---------CAGTGCCGCCTCCATCTAGTCTGTGGCCCCCAA-TCCCCAAAA--------AAACA---A----------------AA-CAAT-ATAAAATACTTAATAATTGCGTTGGGA------------------AATGTG-------C-----GGCTAAATGGCAACGTAATCAACGTGCAACGGCAGCCAAAA-------ACAAACGTCTAAATAATAGTAGAAAGTTTTTTTTTATTGTTAAACAAAGCTCTAGCTCTGCTCTGCT-CC----GC--GAA----------------------------------------------GCAGCTGCCAAAAATCGAA--------------------------------------------------------ATAACCAAAGCATCCATCCACCGGACGGACTCCATCACTTCCACGACTTG-CGT------TTTTGCGTGT-GA
droWil2 scf2_1100000004511:2616108-2616382 + -------------------------------------------------------------------------------------------------GTTATTATTATTATTATTACCCTT--CGCG-------------G----TCCGA-A--A-------GAA--------G-TTT------------------------AAAAACCAAAAC--------ACACA---AAAACCTCTCACAGAGAAG-ATAC-ACAAAATTTACATTAATTACGCTCAAAA----------------T---GTG-------C-----AGCTAAC-----------------------------GGCAA-------CA-AACAACTAAATAATAGTAGAAAGTTT----TTATTATTA--------------TTATTT----T-CGGTT-------AAGAGCTTAATACCAGCGAGAAGA-------------------------A---GCAAAAAAAAAAA-AACAA--AAAAGACGCAAAACCCAA--A-AACGAA---CAAAACCGAAAAG--------------C-----------------------------------T----AAA------TTTTGCGTGT-GA
droVir3 scaffold_13049:3456888-3457131 - TT-GT-------------------------------------------------------------------------------------------------AATTATTGTTATTAACCGG-CTCAG----ATG---AGGGTCAGCCTGT--GT--------TGA--------G-GCT------------------------AA---------A--------G-TT--AAA---------------------TA-ACAAAATACAAAATAATTGCGTTCAAAA----------------T---ATGCAAC---T-----GGCCAGA-T--------CG-A-----CAACGACAACAACA---------ACAAGAGCTACGCAAGCGTAGAAAGTTT----TTATTGTTA--------------TTATTT---TT-AA--------GCCAG-------CA-------------------------------------AAACGCCAAAGTCAAAGCCAAAA--AA-----G-----C----GA--A-------------------------AAAACCGAAGCAT-------CA------------------------T-CACATT------TTTTGCGTGT-GA
droMoj3 scaffold_6654:561732-561967 + -------------------------------------------------------------------------------------------------------ATTGTTGTAATTAGCCCAGCCCAG----------------------A-----TGAGGGT---------C-A-ACT------------------------AA------AG------------CT--GAG---------------------TA-GTAAAATACCAAATAATTGCGCTTAAAA----------------T---ATGCAACAGTC-----TGCCCAAAT--------------------------CGACAA-------CAAAACAA--ACGCAAGCGTAGAAAGTTT----TTATTGTTA--------------TTTTAT---TT-AA--------GCCAG-------TAACAGCAAAAAAA-------------------------A---AAAAAAAAAAAAA-AAAAGAAAAAC---------AACAA--AA--A--ATAAATAAACCAAAAAGCGAAAT----------------------------------------------------------AACGACGAAT-CA
droGri2 scaffold_15110:7632940-7633147 - -------------------------------------------------------------------------------------------------------ATTATTGTTATTACACGA--TCGG----------------------T------------TGA--------G-GGT------------------------CGCCTGTGTG------------TT--AAA---------------------TA-ATAAACGATAAAATAATTACGCTCGAGA----------------TA---TGCAACA--G-----CAACAATAA--------------------------CAATAA-------C--AATAGCTACGCAAGCGTAGAAAGTTT----ATATTATTA--------------TTATT----TT-GAA-A-----GCCAA-------CAAA-----------ACACAAAATTC--------------AAAGCCAAAAACCGAAGCATCA--T-----------------------------------------------------------------------------------------------CAAATT------TTTTGCGTGT-GA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TA-GTTTG--------------TTTA-------ACCATTTGCGTGCGACACTCGCCTTG----GG--GCAAGTT--------TGAGGTATTTTCCAAGTTGGCATTATTGTAATTAGCCTG--TCCG----------------------T------------AGA--------G-ACT------------------------ACGAATCGAGAC--------GAACA---A---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCGAACAACCA--TA-----G-----C----AA--GAG---------------------------------C-----------------------------------TTTG-AAA------TTTTGCGTGT-GASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................AGA--------G-ACT------------------------ACGAATCGAGAC--------GAACA---A---------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................2612.00201000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................ACGGCTAAATAATAGTAGAAAGT........................................................................................................................................................................................................................................................2311.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-AAA------TTTTGCGTGT-GA1811.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GAG---------------------------------C-----------------------------------TTTG-AAA------TTTTGC.......1811.00100100000000000000
..................................................................................................................................................................AGA--------G-ACT------------------------ACGAATCGAGAC--------....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..................................................................................................................................................................AGA--------G-ACT------------------------ACGAATCGAGAC--------G...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
......................................TTGCGTGCGACACTCGCCTTG----G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..............................................................................................................................................................................................................ATCGAGAC--------GAACA---A---------------------AA-ATAAAACGC..........................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...................................CATTTGCGTGCGACACTCGCCTTG----GG--GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
droSec2
TA-GTTTG--------------TTTA-------ACCATTTGCGTGCGACACTCGCCTTG----GG--GCAAGTT--------TGAGGTATTTTCCAAGTTGGCATTATTGTAATTAGCCTG--TCCG----------------------T------------AGA--------G-ACT------------------------ACGAATCGAGAG--------GAACA---A---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCGAACAACCA--TA-----G-----C----AA--GAG---------------------------------G-----------------------------------TTTG-AAA------TTTTGCGTGT-GASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................ATAATTGCGCTGGAAA----------------TAA....................................................................................................................................................................................................................................................................................................................................................1911.0011000
.................................ACCATTTGCGTGCGACACTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
............................................................................................................TGTAATTAGCCTG--TCCG----------------------T------------AGA--------G-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
..................................................................................................................................................................................................................................................................................CGCTGGAAA----------------TAATGTGCG-----.........................................................................................................................................................................................................................................................................................................................................1811.0010010
..............................................................................................................................................................................................................................................................................ATTGCGCTGGAAA----------------TAATGTGCG-----C-----...................................................................................................................................................................................................................................................................................................................................2311.0010100
........................................................................................................................................................................................................................................................................................................................................................................................................GTTT----TTATTGTTA--------------TCTCTTCTT..................................................................................................................................................................................................................2211.0011000
.............................................................................................................................................................................................................................................................................AATTGCGCTGGAAA----------------TAATGTG................................................................................................................................................................................................................................................................................................................................................2111.0010010
................................................................................................................ATTAGCCTG--TCCG----------------------T------------AGA--------G-ACT------------------------ACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
dm3
TA-GTTTA--------------TTTA-------ACCATTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------TGAAGTATTTTCCAAGCTGGCATTATTGTAATTAGCCTG--TCCG----------------------T------------AGA--------G-ACT------------------------ACGAATCGAGAC--------AAACA---A---------------------TA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGTTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCGAACAACCA--TA-----G-----C----AA--GAG---------------------------------C--------T--------------------------TTTA-AAA------TTTTGCGTGT-GASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................TAATTAGCCTG--TCCG----------------------T------------AGA--------G-A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000100
......................TTTA-------ACCATTTGCGTGCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000010
...................................................................................................................AGCCTG--TCCG----------------------T------------AGA--------G-ACT------------------------ACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
..............................................................................................................TAATTAGCCTG--TCCG----------------------T------------AGA--------G-AA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TG--TCCG----------------------T------------AGA--------G-ACT------------------------ACGAATCGAGAC--------G...................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................G--CCAAGTT--------TGAAGTATTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TGCGCTGGAAA----------------TAATGTGCG-----C-----...................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................TAATGTGCG-----C-----GGCTAAAAG--------------------------CG..............................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................................................................................................................................................................................CGCTGGAAA----------------TAATGTGCG-----C-----GG.................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTCTTCT-GA--------GCC----------------------------------------------GCA.................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TT----TTATTGTTA--------------TCTCTTCTTC.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCT-GA--------GCC----------------------------------------------GCAGCTG.............................................................................................................................................1911.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GCGTGCGACACTCGCCTTG----GG--CCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TTG----GG--CCAAGTT--------TGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TA-------ACCATTTGCGTGCGACACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TATTGTTA--------------TCTCTTCTTCT-G..............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GGCTAAAAG--------------------------CGTTAA-------CGTAACGGC..........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAAC.....................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TAAAAG--------------------------CGTTAA-------CGTAACGGC..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GC..................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................TTG----GG--CCAAGTT--------TGAAGTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.......................................................CTTG----GG--CCAAGTT--------TGAAGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
............................................................................................................TGTAATTAGCCTG--TCCG----------------------T------------AGA--------G-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............................................GACACTCGCCTTG----GG--CCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................GTAATTAGCCTG--TCCG----------------------T------------AGA--------G-AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TG----GG--CCAAGTT--------TGAAGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................ACACTCGCCTTG----GG--CCAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----C----AA--GAG---------------------------------C--------T--------------------------TTTA-AAA------TTTTG........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------GCC----------------------------------------------GCAGCTGCCAAAAAC.....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................ATTGCGCTGGAAA----------------TAATGTG................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGCGTGCGACACTCGCCTTG----GG--CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TTGCGCTGGAAA----------------TAATGTGCG-----C-----...................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGGAAA----------------TAATGTGCG-----C-----GG.................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CCTTG----GG--CCAAGTT--------TGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAA.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
........................................................................................................TTATTGTAATTAGCCTG--TCCG----------------------T------------AGA--------G-AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTA-------ACCATTTGCGTGCGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................AGA--------G-ACT------------------------ACGAATCGAGAC--------AA..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGCCAAAAACCGAACAACC............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AATGTGCG-----C-----GGCTAAAAG--------------------------CG..............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................CGACACTCGCCTTG----GG--CCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GCTAAAAG--------------------------CGTTAA-------CGTA...............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
droEre2
TA-TTTTG--------------TTTA-------ACCAATTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------TGAGGTATTTTCCAAGTTGGCATTATTGTAATTAGCCTG--TCCG----------------------T------------GGA--------G-ACT------------------------ACGAAACGAGAC--------GAACA---A---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCGAACAACCA--TA-----G-----C----AA--GAG---------------------------------C-----------------------------------TTTA-TAA------TTTTGCGTGT-GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................AATTGCGTGCGACACTCGCCTTG----GG--C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000020
......................................................................................GTATTTTCCAAGTTGGCATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.......................................................................................................ATTATTGTAATTAGCCTG--TCCG----------------------T------------GGA--------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCA--TA-----G-----C----AA--GAG---------------------------------C-----------------------------------TTTA-TAA------TTTTGC.......2811.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCCAAAAACCGAA.................................................................................................................................1811.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-GA--------GCC----------------------------------------------GCAGCTGCCAAA........................................................................................................................................1911.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCA--TA-----G-----C----AA--GAG---------------------------------C-----------------------------------TTTA-TAA------TTTT.........2811.0010100000
.......................TTA-------ACCAATTGCGTGCGACACTCGCCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................GTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GC...................................................................................................................................................................................................2811.0011000000
droYak3
TT-GTTTGGCCATTTTAGCCATTTTA-------ACCATTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------TGAGGCATTTTCCAAGTTGGCATTATTGTAATTAGCCTG--TCCG------------------TCCGT------------AGA--------G-ACT------------------------ACAAAACGAGAC--------GAACAC-AA---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTTT---TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCGAACAGCCA--TA-----G-----C----AA---AG---------------------------------C-----------------------------------TTTA-AAA------TTTTGCGTGT-GASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................CCTTG----GG--CCAAGTT--------TGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
........................................................................TT--------TGAGGCATTTTCCAAGTTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------------------GCAGCTGCCAAAAACCGAACAGCCA--TA-----G-----C----AA---A.................................................................................................3311.00100000000001
droEug1
TTATTTCA--------------TTTG-------CCCATTTGCGTGCGACAATCGCCTTG----GG--CCAAGTT--------TGAGTTAGTTTCCAAGTTTGCATTATTGTAATTAGCCTG--TCCG------------------------------------GC--------G-ACT------------------------ACGAAACGAAAC--------GTAT--AAA---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAGCCGAATAACCA--TA-----G-----C----AA--AACCAG---CAAAAC---------------------C-----------------------------------GTCG-AAA------TTTTGCGTGT-GASizeHit CountTotal NormTotal
No Reads
droBia1
TA-GTTTG--------------TTTA-------CCCATTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------GGAGCCGTTTTCC-AGTTTGCATTATTGTAATTAGCCCG--CCCG----------------------T------------CGG--------G-ACT------------------------GCGAAACGAAAC--------GAATA---A---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCTAAGAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTT-----TTATTGTTA--------------TCTTCTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAGCCGAACGACCA--TA-----G-----C----AA--AA----------------------------------C-----------------------------------TTCG--AA------TTTTGCGTGT-GASizeHit CountTotal NormTotal
No Reads
droTak1
TTATTTTA--------------TTTA-------CCCATTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------TGAGTTAT-TTCCAAGTTTGCATTATTGTAATTAGCCTG--TCGG------------------CCCGT--CG--------AGA--------G-ACT------------------------ACGAAACGAAAC--------GAAT--GAA---------------------AA-ATAAAACGCAGAATAATTGCGCTGGAAA-------------TA-TAATGTGCG-----C-----GGCTAAGAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCT-TTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAGCCGAAAAACCA--TA-----G-----C----AA--AAG---------------------------------C-----------------------------------TTCG-AAA------TTTTGCGTGT-GASizeHit CountTotal NormTotal
No Reads
droEle1
TA-CTCTA--------------TTTG-------CCCATTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------AGAGAC-TTTTCCAAGTTTGCCTTATTGTAATTAGGCTG--TCAG------------------ACTGT--CT--------AACGACTGACTG-GCT------------------------ACGAAACAAAAC--------GTAT--AAA---------------------AA-ATAAAACGCAGAATAATTGCGCTGGATA-------------TA-TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCAAATAACCA--AA-----G-----C----AAA-AAG---------------------------------C-----------------------------------TTTG-AAGTTTTAGTTTTGCGTGT-GASizeHit CountTotal NormTotal
No Reads
droRho1
TTATTTTA--------------TTTA-------CCCGTTTGCGTGCGACACTCGCCTTG----GG--CCAAGTT--------TGAGCTATTTCTCAAGTTTGCATTATTGTAATTAGCCCG--TCCG----------------------T------------C----------G-ACT------------------------ACGAAACGAAAC---GAAACGAAT--AAA---------------------TA-ATAAAACGCAGAATAATTGCGCTGGAAA----------------TAATGTGCG-----C-----GGCCAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACCAAATAACCA--AA-----G-----C----AA--AAG---------------------------------C-----------------------------------TTTG-AAG------TTTTGCGTGT-GASizeHit CountTotal NormTotal
No Reads
droFic1
TAATTTCG--------------TTTA-------CCCATTTGCGTGTGACACTCGCCTTG----GG--CCAAGTT--------TGAGTTAC-TTCCAAGTTTGCATTATTGTAATTAGCCTG--TCGT----------------------T------------C----------G-ACT------------------------ACGAAACGAAAC--------GAATATAAG---------------------AT-ATAAAACGCAGAATAATTGCGGTGGAAA----------------TAATGTGCG-----C-----GGCTAAAAG--------------------------CGCTAA-------CGTAACGGCTAAATAATAGTAGAAAGTTTT--TTTATTGTTA--------------TCTCTTCTTCT-GA--------GCC----------------------------------------------GCAGCTGCCAAAAACTAAATAACCA--AA-----G-----C----AA--AAG---------------------------------C------------------------------------TCG-AAA------TTTTGCGTGT-GASizeHit CountTotal NormTotal
No Reads
droKik1
TT-GTTTATGTGT--------TTTTACCCCACGACCATTTGCGTGCGACGTTCGCCTTG----GGGGCCCAGTTAGTTGAGCTGAGTTAT-TTCCAAGTTTGCATTATTGTAATTAGCCTG--GCAGTCAGCTGCCTCG-------CC-TC-----GAGTGT---------CCGCGCTAC-----------------------CGAAATAAAACCTAGAAAAAGAT--AAA-----------------AGTAAACCTAAAACGCAGAATAATTGCGCTGGAAGTGG-------AAATGGAAATGTGCG-----C-----GGCTAAATGG-------------------------CGCTAACGTATAACGTAACGGCTAAATAATAGTAGAAAGTTT----TTATTGTTA--------------TCTCTTCTTCTTCGGCTGGCGAAGC----------------------------------------------GCAGCTGCCAAAAACCAAATAACCA--AG-----G-----C----AA--AAG-----------CCGT----------------AGC------------------------------------TTC-AAA------TTTTGCGTGT-GASizeHit CountTotal NormTotal
No Reads
droAna3
TT-AGTTA--------------TTTG-------GCCATTTGCGTGCG-CGTTTACCTTG----GG--GCG-GT--------------CGGTCTCCAAGTTGGAATTATTGTAATTAC-CTC--TCC-----------------------TCG--ACAAGTGT---------CCG--CC------------------------AC-AAACG-------------AAT--GAA-A----------TAA-AATTAAA-ATAAAACGCAGAATAATTACGCTGCAGCTGGAGCTTGGGAATGGAAATGTGCG-----C---GCGTCTAAACGGCAAAA-AAGCA-----AAACGGCAACGCTAA-------CGTAACGGCTAAATAATCGTAGAAAGTTT----TTATTGTTA--------------TCGCTTCTTCT-GA--------GCC----TCCAGTCTGAGCCAGAGTCAGAGCAAGAGTCAGAGCCAATCCGGAGCTGCCAAAAACCGAA-AGCCA--AA-----C-----C----AA----------------------------------------------------------------------------CA-AAT------TTTTGCGTGC-CASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCAAGAGTCAGAGCCAATC.....................................................................................................................................................2211.001100000
...................................................................................................................AC-CTC--TCC-----------------------TCG--ACAAGTGT---------CCG--CC------------------------AC-A....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
................................................................G--GCG-GT--------------CGGTCTCCAAGTTGGAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................................GTGCG-CGTTTACCTTG----GG--GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................TTA--------------TCGCTTCTTCT-GA--------GCC----..............................................................................................................................................................................................1911.001010000
...................................................................................................................................................................................................................................................................AACGCAGAATAATTACGCTG...........................................................................................................................................................................................................................................................................................................................................................................2011.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCT-GA--------GCC----TCCAGTCTGAGCC.................................................................................................................................................................................2511.001010000
..........................................................G----GG--GCG-GT--------------CGGTCTCCAAGTTGGAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
......................................................................................................................................................................................................................................................................................................................................................................AA-------CGTAACGGCTAAATAATCGT...............................................................................................................................................................................................................................................................2211.001000010
.............................................CG-CGTTTACCTTG----GG--GCG-GT--------------CGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCT-GA--------GCC----TCCAGTCTGAG...................................................................................................................................................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGAGCAAGAGTCAGAGC..........................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTCT-GA--------GCC----TCCAGTC.......................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCCGGAGCTGCCAAAAACCGAA-A...............................................................................................................................2611.001010000
...............................................................................................................................................................................................................................................................................TTACGCTGCAGCTGGAGCTTGGGA...........................................................................................................................................................................................................................................................................................................................................................2411.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------------------------------------------------------------------------CA-AAT------TTTTGCGTGC-C.1811.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGCTGCCAAAAACCGAA-AGC.............................................................................................................................2311.001000010
droBip1
CAGTTTCA-----------------G-------CTCATTTGCGTGCG-CGGTTACCTTG----GG--GC----------------GGCCGTCTCC-AGTTGGAATTGTTGTAATTAC-CTC--TCG----------------------------ACAAGTGT---------CCG--CC------------------------AC-AAACGAAAC--------GA-T--AAA-----------------ATTAAA-ATAAAACGCAGAATAATTACGCTGCAGCTGGAGCTTGGGAATGGAAATGTGCG-----CGTCGCGTCTAAACGGCAGCAGCGACAAGA------GGCAACGCTAA-------CGTAACGGCTAAATAATCGTAGAAAGTTT----TTATTGTTA--------------TCGCTTCTTCT-GA--------GCCAGA-----GCCTGAGCCAGAGCCAGGGC------------------AGAGCTGCCAAAAACCGAA-AGCCA--AAAA---------CCCGA--AA--A--GCAAATAATCCA-----------------AGC--------TCA------------------------GGCC-AAT------TTTTGCGTGCCGGSizeHit CountTotal NormTotal
No Reads
dp5
TT-GT-TG--------------TGAA-------TCCATTTGCGTGCCGTAGTCGCCTTGCCTGG------------------------------------------GTCGTAATTACGTGG--TCAG----CTG---AG-------CC-CC-----GAGTCT---------CAGTGCCGCCTCCATCTAGTCTGTGGCCCCCAA-TCCCCAAAA--------AAACA---A----------------AA-CAAT-ATAAAATACTTAATAATTGCGTTGGGA------------------AATGTG-------C-----GGCTAAATGGCAACGTAATCAACGTGCAACGGCAGCCAAAA-------ACAAACGTCTAAATAATAGTAGAAAGTTTTTTTTTATTGTTAAACAAAGCTCTAGCTCTGCTCTGCT-CC----GC--GAA----------------------------------------------GCAGCTGCCAAAAATCGAA--------------------------------------------------------ATAACCAAAGCATCCATCCACCGGACGGACTCCATCACTTCCACGACTTG-CGT------TTTTGCGTGT-GASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................GTAGTCGCCTTGCCTGG------------------------------------------GTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
..........................................................GCCTGG------------------------------------------GTCGTAATTACGTGG--T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
..............................................................................................................TAATTACGTGG--TCAG----CTG---A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
.............................................CCGTAGTCGCCTTGCCTGG------------------------------------------GTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
.....................................................................................................................................................................................................................................................................................TGGGA------------------AATGTG-------C-----GGCTAA.............................................................................................................................................................................................................................................................................................................................1811.0010100000000
.................................TCCATTTGCGTGCCGTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
droWil2
-------------------------------------------------------------------------------------------------GTTATTATTATTATTATTACCCTT--CGCG-------------G----TCCGA-A--A-------GAA--------G-TTT------------------------AAAAACCAAAAC--------ACACA---AAAACCTCTCACAGAGAAG-ATAC-ACAAAATTTACATTAATTACGCTCAAAA----------------T---GTG-------C-----AGCTAAC-----------------------------GGCAA-------CA-AACAACTAAATAATAGTAGAAAGTTT----TTATTATTA--------------TTATTT----T-CGGTT-------AAGAGCTTAATACCAGCGAGAAGA-------------------------A---GCAAAAAAAAAAA-AACAA--AAAAGACGCAAAACCCAA--A-AACGAA---CAAAACCGAAAAG--------------C-----------------------------------T----AAA------TTTTGCGTGT-GASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................A--------------TTATTT----T-CGGTT-------AAGAGCTTAAT........................................................................................................................................................................................2412.00220000
droVir3
TT-GT-------------------------------------------------------------------------------------------------AATTATTGTTATTAACCGG-CTCAG----ATG---AGGGTCAGCCTGT--GT--------TGA--------G-GCT------------------------AA---------A--------G-TT--AAA---------------------TA-ACAAAATACAAAATAATTGCGTTCAAAA----------------T---ATGCAAC---T-----GGCCAGA-T--------CG-A-----CAACGACAACAACA---------ACAAGAGCTACGCAAGCGTAGAAAGTTT----TTATTGTTA--------------TTATTT---TT-AA--------GCCAG-------CA-------------------------------------AAACGCCAAAGTCAAAGCCAAAA--AA-----G-----C----GA--A-------------------------AAAACCGAAGCAT-------CA------------------------T-CACATT------TTTTGCGTGT-GASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................ACCGG-CTCAG----ATG---AGGGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................C---T-----GGCCAGA-T--------CG-A-----CAACGACAAC...............................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTTT----TTATTGTTA--------------TT.........................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................G-A-----CAACGACAACAACA---------ACAAGAGCTA........................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAAA--AA-----G-----C----GA--A-------------------------AAAA.....................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................A-T--------CG-A-----CAACGACAACAACA---------AC................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ATGCAAC---T-----GGCCAGA-T--------CG-A-----CAACGAC..................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................AACCGG-CTCAG----ATG---AGGGTCAGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CA---------ACAAGAGCTACGCAAGCGTA..............................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................A----------------T---ATGCAAC---T-----GGCCAGA-T--------CG-A-----CAACGA...................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................GGCCAGA-T--------CG-A-----CAACGACAACA..............................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................CAACAACA---------ACAAGAGCTACGCAAGCGTA..............................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
-------------------------------------------------------------------------------------------------------ATTGTTGTAATTAGCCCAGCCCAG----------------------A-----TGAGGGT---------C-A-ACT------------------------AA------AG------------CT--GAG---------------------TA-GTAAAATACCAAATAATTGCGCTTAAAA----------------T---ATGCAACAGTC-----TGCCCAAAT--------------------------CGACAA-------CAAAACAA--ACGCAAGCGTAGAAAGTTT----TTATTGTTA--------------TTTTAT---TT-AA--------GCCAG-------TAACAGCAAAAAAA-------------------------A---AAAAAAAAAAAAA-AAAAGAAAAAC---------AACAA--AA--A--ATAAATAAACCAAAAAGCGAAAT----------------------------------------------------------AACGACGAAT-CASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................G----------------------A-----TGAGGGT---------C-A-ACT------------------------AA------AG------------..................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------------A---AAAAAAAAAAAAA-AAAAG...........................................................................................................................21200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA-------------------------A---AAAAAAAAAAAAA-AAAAGAAAAAC---------AAA.........................................................................................................35200.051000100
droGri2
-------------------------------------------------------------------------------------------------------ATTATTGTTATTACACGA--TCGG----------------------T------------TGA--------G-GGT------------------------CGCCTGTGTG------------TT--AAA---------------------TA-ATAAACGATAAAATAATTACGCTCGAGA----------------TA---TGCAACA--G-----CAACAATAA--------------------------CAATAA-------C--AATAGCTACGCAAGCGTAGAAAGTTT----ATATTATTA--------------TTATT----TT-GAA-A-----GCCAA-------CAAA-----------ACACAAAATTC--------------AAAGCCAAAAACCGAAGCATCA--T-----------------------------------------------------------------------------------------------CAAATT------TTTTGCGTGT-GASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:00 AM