ID:

dsi_22298

Coordinate:

3r:59070-59239 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.1 -32.1 -31.9

Flybase annnotation

exon [3r_59240_59420_+]; CDS [3r_59240_59299_+]; exon [3r_58944_59069_+]; CDS [3r_58944_59069_+]; intron [3r_59070_59239_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGGGTTTTCAAACGCATGTTCCCCAACTGGGACGATAATTATTGGCAGGTACGTGACCCAAACCAGGCCTAGAGCTTGTCTTCCTTAAACTGCTTGTACATGTTCAGTAAGTTGACTACTAATGCTGATGGCCTATTGTATGGCTTTTAGTTGTAAAGTCGCTACACAAAAGATTTATGTAATTTCTAAGGATTTTTAACCCTTTTCTTGGTCCGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAA
**************************************************...((.((((.....(((((.....)))))...((((((.......((((.((.((..((.(((.((((......(((((.((((........)))).))))).....)))))))..))..)).)).)))).......)))))).................))))))...**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
M023
head
M025
embryo
GSM343915
embryo
M053
female body
SRR553488
RT_0-2 hours eggs
SRR618934
dsim w501 ovaries
M024
male body
SRR902009
testis
O002
Head
SRR902008
ovaries
SRR553487
NRT_0-2 hours eggs
SRR553485
Chicharo_3 day-old ovaries
................................................................................................................................................................................................................................AGCCCAGCTATGAAGACATGAAGCAACT.................. 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAAGCAACT.................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TTTATGAAGACATGAAGCAACTTGTTA............. 27 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAA........................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....GTTTTCAACCGCATGTTCCCCAACTGG.............................................................................................................................................................................................................................................. 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................ATGAAGACATGAAGCAACT.................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................ATTGTATGGCTTCTAG...................................................................................................................... 16 1 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
............AACGCATGTTCCCCCACTGGGAC........................................................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................CTATGAAGACATGAAGCAACT.................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TGAAGACATGAAGCAACA.................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGAACCAGCCCAGCTATGAAGACATGA......................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGCTATGAAGACATGAAGCAACTTG................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
......TTTTCAAACGCATGTTCCCCAACTG............................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGCCCAGCTATGAAGACATGAAGCAAC................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............AACGCATGTTCCCCAACTGGGAC........................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGCTATGAAGACATGAAGCA..................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGCTATGAAGACATGAAG....................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................TGGGACGATAATTATTGGCAGAACC........................................................................................................................................................................................................................ 25 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TGACTACTAATGCTGATGGCC....................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGCCCAGCTATGAAGACATG.......................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTT................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................ATGAAGCAACTTGTTATTGATGCC..... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATTGGCAGAACCAGCCCAGCT..................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CTTTTGGTTGTAAAG.............................................................................................................. 15 1 20 0.30 6 1 0 0 0 0 2 0 0 0 0 0 2 1
..............................................................................................................AAGTTGACTTCTGATGATGAT........................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................ACGACTGCTGATGGCCTA..................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................CTGGGACGATAATGA................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................TGATGGCCCATGGTATGG............................................................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................ACTAATGCTGACGACCTGT.................................................................................................................................... 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATTTTTACCCCTTGTCTTGAT........................................................ 21 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................GGTCTATTGCATGGCGTTT........................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................ACAATAAGGATTGGCAGGT.......................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................GTCTTCCCTAAACTGA............................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GTCTTTTGGTTGTAAAG.............................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................AAAAGATTTATGTATT..................................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTCCCAAAAGTTTGCGTACAAGGGGTTGACCCTGCTATTAATAACCGTCCATGCACTGGGTTTGGTCCGGATCTCGAACAGAAGGAATTTGACGAACATGTACAAGTCATTCAACTGATGATTACGACTACCGGATAACATACCGAAAATCAACATTTCAGCGATGTGTTTTCTAAATACATTAAAGATTCCTAAAAATTGGGAAAAGAACCAGGCGTCTTGGTCGGGTCGATACTTCTGTACTTCGTTGAACAATAACTACGGTTGTT
**************************************************...((.((((.....(((((.....)))))...((((((.......((((.((.((..((.(((.((((......(((((.((((........)))).))))).....)))))))..))..)).)).)))).......)))))).................))))))...**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
GSM343915
embryo
M023
head
SRR618934
dsim w501 ovaries
SRR553485
Chicharo_3 day-old ovaries
SRR902009
testis
SRR553488
RT_0-2 hours eggs
M024
male body
.....................................................................................................................................................ATCAAGATTTCCGCGATGTGT.................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................TTTCAGAGTTGTGTTGTCTAAAT........................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0
......................................................CACGGAGTTTGGTCCGGA...................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................CTGTACTTCGTAGAA................. 15 1 5 0.20 1 0 0 0 1 0 0 0 0
...................................................................................AGGAATTTGAAGAACATGA........................................................................................................................................................................ 19 2 6 0.17 1 0 0 0 0 1 0 0 0
...........TTTGCGGACGAGGTGTTGAC............................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................CGATGTCATTTCTAAGTAC......................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................TCAGCGATGTGTCATCTG.............................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:59020-59289 + dsi_22298 CAAGGGTTTTCAAACGCATGTTCCCCAACTGGGACGATAATTATTGGCAGGTACGTGACCC--AAAC--CAGGCCTAG---A----------GCTTGTCTTCCTTA----A--A-----C----TGCTTGTAC-------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCAGTAAGTTGACTACTAATGCTGAT-----------GGCC----------------------TATTGTATGGCTTTTAGTTGTAAAGTCGCTACACAAAAGAT-TTAT-------GT----------AATTTCTAAG----------------------GATT-----TTTA-A--------------------------C------CCTTT--TC------------------------------TT----GGTCCGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAA
droSec2 scaffold_6:193291-193560 + CAAGGGTTTTCAAACGCATGTTCCCCAACTGGGACGATAATTATTGGCAGGTACGTGACCC--AAAC--CAGGCCTAG---A----------GCTTGTCTTCCTTA----A--A-----C----TGATTGTAC-------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCAGTAAGTTGACTACTAATGCTGAT-----------GGCC----------------------TATTGTATGGCTTTTAGTTGTAAAGTCGCTACACAAAAGAT-TTAT-------GT----------AATTTCTAAG----------------------GATC-----TTTA-A--------------------------C------CCTTT--TC------------------------------TT----GGTCCGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAA
dm3 chr3R:66387-66649 + CAAGGGTTTTCAAACGCATGTTCCCCAACTGGGACGATAATTATTGGCAGGTACGTGATCC--AAAC--CAGACCTAG---A----------GTTTGTCTTCGTTT----A--A-----C----TGCTTG--C-------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACAGTAAGCTGATTACTAATGCTGAT-----------GGCC----------------------TAT------TCTCTTAATTGTAAAGTCGCTACACAATAGAT-TTAT-------AT----------AATTTCTATG----------------------TATT-----TTTA-A--------------------------C------CCTTT--TC------------------------------TTG---GTCTCGTAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAA
droEre2 scaffold_4770:424718-425045 + CAAGGGTTTTTAAACGCATGTTTCCCAACTGGGACGATAACTACTGGCAGGTACGTGATCC--AAAA--TAGGCCTAT---A----------GCTTGCATTCGTTT----A--G-----C----AGC-------------ATTTTCGGCCATTTCTGAATTTAA----------ATCTCATCTCT--------------------------------------------------------------------------------------------G-------------CCAACT---CATTAATCAC-------------------------------------ACTAACAGCT------------ATAGCGC-ATGCGATTCGTAAGTTGCTTATTAATAAAT--------------GAC----------------------TAT------GCTTTTTAATGTAAAGTTGCTACGTAAAAGAT-TTAT-------AC----------AATTTCTAAG----------------------AATT-----TTTA--C--------------------------------ACTCTTGTC------------------------------TTG---GACTTGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTCATTATTGATGCCAACAA
droYak3 3R:428523-428858 + CAAGTGTTTTCCAACGCATGTTCCCCCATTGGGACGATAATTACTGGCAGGTACGTGATCC--AAAG--TAGGCCTAG---A----------GCTTTCATTAGTTA----C--A-----C----AGCTTGTAC-------CTTTTCGACCATATCTGACTTTAA----------ATATCATCACT--------------------------------------------------------------------------------------------G-------------TCAACT---CATTAATCAT-------------------------------------ACTAACAGCT------------ATAGCGC-ATTCGATCCGTAAGTTTATTACTAATAATCTT-----------GGCC----------------------TAT------GCTTTTAAATGTGCAGTTGCTACATGAAAGAT-TTAT-------AT----------AATTTCTAAT----------------------AATT-----TTAA--C--------------------------------ACTTTTTT-------------------------------CTT---GACGCGCAGAACCAGCCTAGCTATGAAGACATGAAGCAACTTATTATTGATGCCAACAA
droEug1 scf7180000405716:72470-72693 + CCAACGTTTTCAAGCGCATGTTTCCTAGCTGGGATAACAATTACTGGAAGGTAAGTGATTGCCAATT--TAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACTT---GATTAAAC-----------------------------------------TAATA------------------------------CCGCTAGTTCATTAGAAACACATTA------------ACC-AGACCA---------------TAT------GCTTT-----------------------CGAT-ATTT-------AA----------AATTTGTTAG----------------------AATT-----GAAA--C--------------------------------GATTT----------------------------------------TTTCTACAGAACTTGCCCTCCTATGAAGACATAAAGCGAAGTGTTTATGATGCCAACAA
droBia1 scf7180000302098:432265-432355 - ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------AT----------TATTATAAAA----------------------AAT----------------------------------------------TATT---------------------------------TTTTGACAATTTGCAGAACTTGCTTACCTACGAAGACATAAAGAGGGGGGTTACTGATGCCAACAA
droTak1 scf7180000414515:10301-10656 - CAAACGTTTTTAAGCGCATGTTCCCGGACTGGGACGACCATTACTGGAAGGTAGGTCATT-----------------G---C----------GCTAGTCTTCGTTA----A--A-----T----TACTTGTTG-------CTTTTCGACAAATATTGC---------------------------------------------------------------------------TTTATTGTT-------------CTTTAAAAATAACACAGTTTAAG-------------TCACGT---CATTAAAAAT-------------------------------------ACTAAAAACT------------GTCGCCC-ACACGATCCGTAAGTTAACTACTAATATGTAC-----------ATT-TAACTTACATACCTTACATATGTAA------ACTTTCTGAAGTGGAATCGGTGATC---AGCTAATATGTAT--------------------TAAAA----------------------AATG-----TTTA--CAATATTTTTTG------------------------------------------------------------T---ATAATCTGCAGAACCTGCCCTCCTATGAAGACATAAGACGAAATGTTAATGATGCCAACAA
droEle1 scf7180000491104:1809968-1810335 + CGCGGGTTTTCAAGCGCATGTTCCCTGGCTGGGAGGACAACTACTGGAAGGTAGGTGATCC--GAAG--CAGGTCTCC---G----------GCTAATCTTCGTTA----A--A-----T----TACTTGTTG-------CTTTTGACCCATTATCGA--TTGA----------TTCTCATCACCGTT-------------GCA---------------------------------------------------TTATGAACATAATCTGAGCTTAC-------------TCACGC---CATTAAACGT-------------------------------------ACTAACAACT------------ATCGCCAAACGCCATCTGTAAGTTGATTGATAACACATTT------------ACC----------------------CAT------GCTTTTCGATGTGAAATC--TGCACTATATAC-ATAT-------AT----------GGTTTTTATT----------------------AATTTTGGTAT-C-AC--------------------------------CTTTTTGT-------------------------------TTTGACAACCTGCAGGATTTGCCCAGCTACGATGATGTGAAGCAACAGATTATCGATGCCAACAA
droRho1 scf7180000777533:4650-5011 + CGCAGGTTTTCAAGCGCATGTTCCCCAGCTGGGAGGACAATTACTGGCAGGTAGGTGATCA--CAAG--GAGGCCTCG---A----------GCTAGTCTTCGTA-----A--A-----T----TACTCGTTG-------CTTTATGTCCATAATCGA-TTTGA----------TTCTCATCACCGTT-------------GTA---------------------------------------------------TTATGAAAATAATCTGAGCTTAC-------------TCACGT---CATTAAACAT-------------------------------------ACTAACAACT------------ATCGCCA-AAACGATCCGTAAGTTGATTAATAATACATTT------------ACC----------------------CAT------GCTTTTCGATGTGAAATCTGT--AAAATGGCTAATAT-------AT----------AGATTATATG----------------------AATT-----TGTA--C-------------------------C------ATTTT---------------------------------TTTTGACAATCGACAGAACTTGCCCACCTATGAGGACCTAAAGCAACAGATTATTGATGCCAACAA
droFic1 scf7180000454096:1195154-1195492 + CGCAGGTCTTCAAGCGCATGTTCCCCAGCTGGGACGACAACTACTGGCAGGTAGGTCGACGC-GAC-----TGAGGGA---GCCCGGCCGGCGCTAGTCCTCACC-----A--T-----T----TACTCGTTG-------CTTTTCACCAATCACCAC-TTTGC----------TTGTCATCACCACT-------------GCT---------------------------------------------------T------------CA----------------------AAACT---CAATAACCAT-------------------------------------ACTAATAACC-------------TCACCA-GCGG-AATAGTAAGTTGATTGCTAACACATGT-----------AACA----------------------AAT------GCTTATCGGTG-----------------------------ATAA-ACGGGGCTTTTCATTTCGGTT----------------------GATT-----TTCA--C--------------------------------ACTTTTGT------------------------------TTTCAACCTTCCGCAGACTTTGCCCACCTATGAAGCCATGAAGCAAAAGATCATTGATGCCAACAA
droKik1 scf7180000302707:124389-124732 + CGCGAGTCTTCAAGCGCATGTTCCCCGAATGGGACGACACATACTGGCAGGTTAGTGTGCG--GAGG--ATTGCCTTA---A----------CCCATTTTTCCCATTCTTA--A-----A----TACTCGTTG-------GTGTTCGTCCAAG------------------------------------------------------------------------------------------------------TACTTAACATTATCAGAACTCAG-------------TAACGT---CACTATGCAT-------------------------------------GTTTAGAACT------------ATCGACA-TTCCGATACGTAAGTAGACTACTAATACATTT-----------GCAT----------------------CAT------GCTTTATTACGTCAAATCGTTCTGCAAAAA----CAA-------AT----------GTTTAAAATT----------------------GCTTTAACTTT-G-AC-------------------------C------ATCTT---------------------------------TTTCGACCATCTACAGACACTGCAATCCTACGAAGACGTCAAACAGAAGGTTTTGGATGCCAACAA
droAna3 scaffold_13340:11075385-11075458 + TTATCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTC------------------------------TTC---GAAATGCAGAACCTTCCCGCCTACGAAGACATCAAACAACAGGTGCTCGACGCCAACAA
droBip1 scf7180000396374:16535-16843 - CTCGCGTCTTCAAGCGCATGTTCCCCGCCTGGGATGATGACTATTGGCAGGTTAGTGGGCC--GAAG--ATTGCATAAGATATCCGCGCATACGTGC---------------------------TTC---TCGCTTT-----------------------------------------------------------------------------------------TTAATGTTTCATT---GTTGC-------T------AAATTGCATGAACTCAT-------------CCATGT---CACTAAACAC-------------------------------------TCTTAAAAGT------------T-------------TTCGTAAGTAG--TACTAATGCCA--------------GCT----------------------TTCTGTGTGACTTTCTACTTTTAAGTCCCAGCATTAA-TAT-GT-----------------------------------------------------------------------------------------------ATATATTC-TTTGCC------------------------------TTT---GAAATTTAGAACCTTCCCGCCTACGAGGACGTCTTACGGCAGGTGTTCGAAGCCAACAA
dp5 2:24855429-24855795 - CACGCGCCTTCAAGCGTATGTTCCCGAGCTGGGAGGACAACTACTGGCAGGTTAGTGAGCC--GCAG--GTTGAGGCT---A----------ACTAGTCTCCGCATAAATC--C-----A-------------------------------TAATCGT-AACAATTTGTAATTGCTTTCATCACTGTG----GTGTGCTTT-------------------------GT-----GTGCTTGTG-------------CATTGTGCATTGCTTAACCTTAA-------------ACACGT---CACTAAACAT-------------------------------------ACTAAAAACT------------TTCGCCA-ATGTCATCCGTGAGTAGAAGACTAATGCATTA-----------GTCG----------------------CAT------GCTAGTATTTG-----------------------------TTGA-GGTGGA----------------------------------------------------CTACATTTTCTGTATAACTAATCGCA-AT----ATATT---------------------------------CTTCGCCCATCTACAGACATTGCCTTCCTACGAGGACGTCAAGCAGCAAGTGCTTGATGCTAACAA
droPer2 scaffold_6:154749-155115 - CACGCGCCTTCAAGCGTATGTTCCCGAGCTGGGAGGACAACTACTGGCAGGTTAGTGAGCC--GCAG--GTTGAGGCT---A----------ACTAGTCTCCGCATAAATC--C-----A-------------------------------TAATCGT-AACAATTTGTAATTGCTTTCATCACTTCG----GTGTGCTTT-------------------------GT-----GTGCTTGTG-------------CATTGTGCATTGCTTAACCTTAA-------------ACACGT---CACTAAACAT-------------------------------------ACTAAAAACT------------TTCGCCA-ATGTCATCCGTGAGTAGAAGACTAATGCATTA-----------GTCG----------------------CAT------GCTAGCGTTCG-----------------------------TTGA-GGTAGA----------------------------------------------------CTACATTTTCTGTATAACTAATCGCA-AT----TTATT---------------------------------CTTCGCCCATCTACAGACATTGCCTTCCTACGAGGACGTCAAGCAGCAAGTGCTTGATGCTAACAA
droWil2 scf2_1100000004921:1440583-1440930 - CACGCGTCTTCAAGCGTATGTTCCCCGCCTGGAATGATGACTACTGGCAGGTTGGTTGAGC--CA-----------------CAT--------------AACTAACTCT-ATATATAACAAAATTGC---ATGCGTTTTATT-----------------------------TTTCCTTCAACACTGTTTTTTTTGTGTATTGTTTGCCCATTTACTAACAACAATCAT-----CTACTCGAT-------------CAATGTGCAT----------------------------------------------------------------------------------------------------------------------TGCGTAAGTATATTTC-AAGGCATGTCTCATGTATTATTCA----------------------TAA------TCCAACATT-----------------AA------------T----------------AGTTGTTTGAATTGTTTTAAACTACTCTAATAATT-----GTTTCTC--------------------------------TC-TTTTGC------------------------------TT---CAATCAACAGAGTCTACCATCGTACGAGGACATTAAGCGACAGGTGCTTGATGCCAACAA
droVir3 scaffold_12822:1352599-1352928 + CGGGCGCCTTCAAGCGCATGTTCCCCGCCTGGGAGGACAGCTACTGGCAGGTGAGTAGATC--GCTGGCCAACTGA--ATCGCAT--------------GCCACATTCAAATACATAA--CAATCGC---CTGCTTT-----------------------------------------------------------------------------------------GCTTAATCTTGTT---CTCGC-------T------CACGCTCACACACTCATGCCTGATCCCAA-ACACTC---GACTTGAT-CGGTGAGTGAGTATC-TCGGCG-------------------------------------------------------------------------------------------------------------------------------CCCACAAGTCCAGCAGCT-CACAAATCAT--TCC-------AC----------AATCTCCCCC----------------------ATTC-----CTTA-A--------------------------A------CACTT--TATTGATCTTCGC-------------------TTT---TCATCACAGACCCTGCCCTCCTATGAGGACATCAAACGCCAGATTATGGATGCCAATAA
droMoj3 scaffold_6540:33966962-33967277 + CTCGCGTCTTCAAACGCATGTTCCCCTCTTGGGACGACAACTACTGGCAGGTTGGTAAAAC--TCTAATGAAATCA--ATTC----------GTTGCTCTTCACATTGAAA--CATAA--TAATCGC---CTGCTTT-----------------------------------------------------------------------------------------TCATAATTCCGTT---TTCGC-----------------------------ATGTCTGATATCAA-ATACTC---CACTGAATACTGTACGTGAGTATT-TCAGCGCCTAATGCTTAT--AAATCATATATCATTTAAC-AATTTCT----------------------------TCTAC-TAC-----------CTT-TG--------------------AAT------GC---------------------------------------------------------------------------------------AT----------------------------------------------------T-TTGAATTGTGT-------------------TT---CCCTTTGTAGACCCTGCCTTCCTATGAGGACATCAAACGTCAGGTTCTGGATGCCAACAA
droGri2 scaffold_15074:2523975-2524326 - CAAGGGCCTTCAAGCGCATGTTCCCCAGCTGGGAGGACAACTACTGGCAGGTTAGTAGATC--GTAT--TGCACATTC---A----------ATAATCATTCCATA----CTAAATAA--TCATCAC---CTGGCT------------------------------------------------------------------------------------------AATTAATCTGGCT---CCCGCTGGCTGAT------TCA------------ATGCATGACCTCAAAACACTTAAACACTGCTT-ATGTGAGTGAGTATTTTCAGCACCTAGTAAATATTCACATTATTCACCACTCAATTAACTTGC----------------------------AACACACAT-----------CAT-TGATT-------------------C------AC---------------------------------------------------------------------------------------AT----------------------------------------------------T-TTAAATTGAAACTATTTTAATGAATTATTTTAATTGCATTCTTAGAATCTGCCTTCATATGAGGACATCAAACGCCAGGTTCTGGATGCTAACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAGGGTTTTCAAACGCATGTTCCCCAACTGGGACGATAATTATTGGCAGGTACGTGACCC--AAAC--CAGGCCTAG---A----------GCTTGTCTTCCTTA----A--A-----C----TGCTTGTAC-------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCAGTAAGTTGACTACTAATGCTGAT-----------GGCC----------------------TATTGTATGGCTTTTAGTTGTAAAGTCGCTACACAAAAGAT-TTAT-------GT----------AATTTCTAAG----------------------GATT-----TTTA-A--------------------------C------CCTTT--TC------------------------------TT----GGTCCGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAASizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGCTATGAAGACATGAAGCAACT..................2812.00200000002000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAAGCAACT..................2712.00200000002000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAA........................2111.00100000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACT..................1911.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGAAGACATGAAGCAACT..................2111.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGACATGAAGCAACA..................1811.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACCAGCCCAGCTATGAAGACATGA.........................2711.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATGAAGACATGAAGCAACTTG................2511.00100000000000010000
......TTTTCAAACGCATGTTCCCCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGCTATGAAGACATGAAGCAAC...................2711.00100000000000001000
............AACGCATGTTCCCCAACTGGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATGAAGACATGAAGCA.....................2011.00100000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATGAAGACATGAAG.......................1811.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TGACTACTAATGCTGAT-----------GGCC----------------------.........................................................................................................................................................................................................................................................2111.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGCTATGAAGACATG..........................2011.00100000100000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTT.................2011.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCAACTTGTTATTGATGCC.....2411.00100010000000000000
droSec2
CAAGGGTTTTCAAACGCATGTTCCCCAACTGGGACGATAATTATTGGCAGGTACGTGACCC--AAAC--CAGGCCTAG---A----------GCTTGTCTTCCTTA----A--A-----C----TGATTGTAC-------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCAGTAAGTTGACTACTAATGCTGAT-----------GGCC----------------------TATTGTATGGCTTTTAGTTGTAAAGTCGCTACACAAAAGAT-TTAT-------GT----------AATTTCTAAG----------------------GATC-----TTTA-A--------------------------C------CCTTT--TC------------------------------TT----GGTCCGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAASizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCTATGAAGACATGAAGCAACTTG................2711.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTATGAAGACATGAAGCA.....................2011.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAAGCA.....................2411.0011000
...............GCATGTTCCCCAACTGGGACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGCCCAGCTATGAAGACATGA.........................2511.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTT.................2011.0010100
dm3
CAAGGGTTTTCAAACGCATGTTCCCCAACTGGGACGATAATTATTGGCAGGTACGTGATCC--AAAC--CAGACCTAG---A----------GTTTGTCTTCGTTT----A--A-----C----TGCTTG--C-------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTACAGTAAGCTGATTACTAATGCTGAT-----------GGCC----------------------TAT------TCTCTTAATTGTAAAGTCGCTACACAATAGAT-TTAT-------AT----------AATTTCTATG----------------------TATT-----TTTA-A--------------------------C------CCTTT--TC------------------------------TTG---GTCTCGTAGAACCAGCCCAGCTATGAAGACATGAAGCAACTTGTTATTGATGCCAACAASizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
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...........................ACTGGGACGATAATTATTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010
...........................................................................TAG---A----------GTTTGTCTTCGTTT----A--A-----C----TGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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.........................................................................................................................................................................................................................................................................................................................................................................................................GATTACTAATGCTGAT-----------GGCC----------------------.........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
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......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------------------------------TTG---GTCTCGTAGAACCAGCCCAGC......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTCGCTACACAATAGAT-T..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
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CAAGGGTTTTCAAACGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CCTAG---A----------GTTTGTCTTCGTTT----A--A-----C----TGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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........................................................................................................................................................................................................................................................................................................................................................................................................TGATTACTAATGCTGAT-----------GGCC----------------------.........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT-----TTTA-A--------------------------C------CCTTT--TC------------------------------TTG---GTCTCGTAG..................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-A--------------------------C------CCTTT--TC------------------------------TTG---GTCTCGTAG..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TTTA-A--------------------------C------CCTTT--TC------------------------------TTG---GTCT.......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAAGCAACTTGTTATTG..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................GGGACGATAATTATTGGCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGTAGAACCAGCCCAGCTATGAAGA..............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TTTGTCTTCGTTT----A--A-----C----TGCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................TGATTACTAATGCTGAT-----------GGCC----------------------TAT------TCT.............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A--------------------------C------CCTTT--TC------------------------------TTG---GTCTCGT....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCCCCAACTGGGACGATAATTATTGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATTGGCAGGTACGTGATCC--A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAGCTATGAAGACA............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................TTCCCCAACTGGGACGATAATTATTGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTTGTTATTGAT........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCAACTTGTTATTGATGCC.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GACCTAG---A----------GTTTGTCTTCGTTT----A--A-----C----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGTTATTGATGCCA....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................CCAACTGGGACGATAATTATTGGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCTATGAAGACATGAAGCAACTTGT...............2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGTAAAGTCGCTACACAATAGAT-...............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCAAACGCATGTTCCCCAACTGGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTTGTTATTGA.........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAAGCAACTTG................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAAGGGTTTTTAAACGCATGTTTCCCAACTGGGACGATAACTACTGGCAGGTACGTGATCC--AAAA--TAGGCCTAT---A----------GCTTGCATTCGTTT----A--G-----C----AGC-------------ATTTTCGGCCATTTCTGAATTTAA----------ATCTCATCTCT--------------------------------------------------------------------------------------------G-------------CCAACT---CATTAATCAC-------------------------------------ACTAACAGCT------------ATAGCGC-ATGCGATTCGTAAGTTGCTTATTAATAAAT--------------GAC----------------------TAT------GCTTTTTAATGTAAAGTTGCTACGTAAAAGAT-TTAT-------AC----------AATTTCTAAG----------------------AATT-----TTTA--C--------------------------------ACTCTTGTC------------------------------TTG---GACTTGCAGAACCAGCCCAGCTATGAAGACATGAAGCAACTCATTATTGATGCCAACAASizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCTATGAAGACATGAAGCAACTCATT..............2911.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTCAT...............2311.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATGAAGCAACTCATTATTGATGCC.....2811.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTCATTATT...........2611.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTCATC..............2311.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAACTCATT..............2311.0010000010
..................................................................................................................................................GGCCATTTCTGAATTTAA----------ATCTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCTATGAAGACATGAAG.......................2011.0010000100
.........TTAAACGCATGTTTCCCAACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
......................TCCCAACTGGGACGATAACTACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.......TTTTAAACGCATGTTTCCCAACTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACATGAAGCAACTCATTATT...........2311.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGACATGAAGCAACTCATT..............2111.0010001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCTATGAAGACATGAAG.......................2211.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTCATTATTGA.........2911.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTCATT..............2411.0010000100
droYak3
CAAGTGTTTTCCAACGCATGTTCCCCCATTGGGACGATAATTACTGGCAGGTACGTGATCC--AAAG--TAGGCCTAG---A----------GCTTTCATTAGTTA----C--A-----C----AGCTTGTAC-------CTTTTCGACCATATCTGACTTTAA----------ATATCATCACT--------------------------------------------------------------------------------------------G-------------TCAACT---CATTAATCAT-------------------------------------ACTAACAGCT------------ATAGCGC-ATTCGATCCGTAAGTTTATTACTAATAATCTT-----------GGCC----------------------TAT------GCTTTTAAATGTGCAGTTGCTACATGAAAGAT-TTAT-------AT----------AATTTCTAAT----------------------AATT-----TTAA--C--------------------------------ACTTTTTT-------------------------------CTT---GACGCGCAGAACCAGCCTAGCTATGAAGACATGAAGCAACTTATTATTGATGCCAACAASizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGACATGAAGCAACTTATTA.............2512.00220000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTAGCTATGAAGACATGAAGCAAC...................2711.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................AGCT------------ATAGCGC-ATTCGATCCGTAAG................................................................................................................................................................................................................................................................................................................2511.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................AGCT------------ATAGCGC-ATTCGATCC.....................................................................................................................................................................................................................................................................................................................2011.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................GCT------------ATAGCGC-ATTCGATCCGT...................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCTATGAAGACATGAAG.......................2011.00100000010000
............AACGCATGTTCCCCCATTGGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTAGCTATGAAGACATGAAGC......................2411.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGACATGAAGCAAC...................1811.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCTAGCTATGAAGACAT...........................2111.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTATTATTGATGCCAAC..2111.00101000000000
............AACGCATGTTCCCCCATTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..............CGCATGTTCCCCCATTGGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
droEug1
CCAACGTTTTCAAGCGCATGTTTCCTAGCTGGGATAACAATTACTGGAAGGTAAGTGATTGCCAATT--TAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACTT---GATTAAAC-----------------------------------------TAATA------------------------------CCGCTAGTTCATTAGAAACACATTA------------ACC-AGACCA---------------TAT------GCTTT-----------------------CGAT-ATTT-------AA----------AATTTGTTAG----------------------AATT-----GAAA--C--------------------------------GATTT----------------------------------------TTTCTACAGAACTTGCCCTCCTATGAAGACATAAAGCGAAGTGTTTATGATGCCAACAASizeHit CountTotal NormTotal
No Reads
droBia1
ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT-------AT----------TATTATAAAA----------------------AAT----------------------------------------------TATT---------------------------------TTTTGACAATTTGCAGAACTTGCTTACCTACGAAGACATAAAGAGGGGGGTTACTGATGCCAACAASizeHit CountTotal NormTotal
No Reads
droTak1
CAAACGTTTTTAAGCGCATGTTCCCGGACTGGGACGACCATTACTGGAAGGTAGGTCATT-----------------G---C----------GCTAGTCTTCGTTA----A--A-----T----TACTTGTTG-------CTTTTCGACAAATATTGC---------------------------------------------------------------------------TTTATTGTT-------------CTTTAAAAATAACACAGTTTAAG-------------TCACGT---CATTAAAAAT-------------------------------------ACTAAAAACT------------GTCGCCC-ACACGATCCGTAAGTTAACTACTAATATGTAC-----------ATT-TAACTTACATACCTTACATATGTAA------ACTTTCTGAAGTGGAATCGGTGATC---AGCTAATATGTAT--------------------TAAAA----------------------AATG-----TTTA--CAATATTTTTTG------------------------------------------------------------T---ATAATCTGCAGAACCTGCCCTCCTATGAAGACATAAGACGAAATGTTAATGATGCCAACAASizeHit CountTotal NormTotal
No Reads
droEle1
CGCGGGTTTTCAAGCGCATGTTCCCTGGCTGGGAGGACAACTACTGGAAGGTAGGTGATCC--GAAG--CAGGTCTCC---G----------GCTAATCTTCGTTA----A--A-----T----TACTTGTTG-------CTTTTGACCCATTATCGA--TTGA----------TTCTCATCACCGTT-------------GCA---------------------------------------------------TTATGAACATAATCTGAGCTTAC-------------TCACGC---CATTAAACGT-------------------------------------ACTAACAACT------------ATCGCCAAACGCCATCTGTAAGTTGATTGATAACACATTT------------ACC----------------------CAT------GCTTTTCGATGTGAAATC--TGCACTATATAC-ATAT-------AT----------GGTTTTTATT----------------------AATTTTGGTAT-C-AC--------------------------------CTTTTTGT-------------------------------TTTGACAACCTGCAGGATTTGCCCAGCTACGATGATGTGAAGCAACAGATTATCGATGCCAACAASizeHit CountTotal NormTotal
No Reads
droRho1
CGCAGGTTTTCAAGCGCATGTTCCCCAGCTGGGAGGACAATTACTGGCAGGTAGGTGATCA--CAAG--GAGGCCTCG---A----------GCTAGTCTTCGTA-----A--A-----T----TACTCGTTG-------CTTTATGTCCATAATCGA-TTTGA----------TTCTCATCACCGTT-------------GTA---------------------------------------------------TTATGAAAATAATCTGAGCTTAC-------------TCACGT---CATTAAACAT-------------------------------------ACTAACAACT------------ATCGCCA-AAACGATCCGTAAGTTGATTAATAATACATTT------------ACC----------------------CAT------GCTTTTCGATGTGAAATCTGT--AAAATGGCTAATAT-------AT----------AGATTATATG----------------------AATT-----TGTA--C-------------------------C------ATTTT---------------------------------TTTTGACAATCGACAGAACTTGCCCACCTATGAGGACCTAAAGCAACAGATTATTGATGCCAACAASizeHit CountTotal NormTotal
No Reads
droFic1
CGCAGGTCTTCAAGCGCATGTTCCCCAGCTGGGACGACAACTACTGGCAGGTAGGTCGACGC-GAC-----TGAGGGA---GCCCGGCCGGCGCTAGTCCTCACC-----A--T-----T----TACTCGTTG-------CTTTTCACCAATCACCAC-TTTGC----------TTGTCATCACCACT-------------GCT---------------------------------------------------T------------CA----------------------AAACT---CAATAACCAT-------------------------------------ACTAATAACC-------------TCACCA-GCGG-AATAGTAAGTTGATTGCTAACACATGT-----------AACA----------------------AAT------GCTTATCGGTG-----------------------------ATAA-ACGGGGCTTTTCATTTCGGTT----------------------GATT-----TTCA--C--------------------------------ACTTTTGT------------------------------TTTCAACCTTCCGCAGACTTTGCCCACCTATGAAGCCATGAAGCAAAAGATCATTGATGCCAACAASizeHit CountTotal NormTotal
No Reads
droKik1
CGCGAGTCTTCAAGCGCATGTTCCCCGAATGGGACGACACATACTGGCAGGTTAGTGTGCG--GAGG--ATTGCCTTA---A----------CCCATTTTTCCCATTCTTA--A-----A----TACTCGTTG-------GTGTTCGTCCAAG------------------------------------------------------------------------------------------------------TACTTAACATTATCAGAACTCAG-------------TAACGT---CACTATGCAT-------------------------------------GTTTAGAACT------------ATCGACA-TTCCGATACGTAAGTAGACTACTAATACATTT-----------GCAT----------------------CAT------GCTTTATTACGTCAAATCGTTCTGCAAAAA----CAA-------AT----------GTTTAAAATT----------------------GCTTTAACTTT-G-AC-------------------------C------ATCTT---------------------------------TTTCGACCATCTACAGACACTGCAATCCTACGAAGACGTCAAACAGAAGGTTTTGGATGCCAACAASizeHit CountTotal NormTotal
No Reads
droAna3
TTATCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTC------------------------------TTC---GAAATGCAGAACCTTCCCGCCTACGAAGACATCAAACAACAGGTGCTCGACGCCAACAASizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
TTATCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTC------------------------------TTC---GAAATGCAGAACC..............................................2811.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAAACAACAGGTGCTCGACGCC.....2511.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCTACGAAGACATCAAACAACAGG................2711.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGACATCAAACAACAGGT...............2111.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGCCTACGAAGACATCAAACAACAGG................2911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAGACATCAAACAACAGGTGCTC...........2711.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGGTGCTCGACGCC.....1911.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAACCTTCCCGCCTACGAAGACATC..........................2911.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAGACATCAAACAACAGGTGCT............2611.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGGTGCTCGACGCCA....2111.001000001
droBip1
CTCGCGTCTTCAAGCGCATGTTCCCCGCCTGGGATGATGACTATTGGCAGGTTAGTGGGCC--GAAG--ATTGCATAAGATATCCGCGCATACGTGC---------------------------TTC---TCGCTTT-----------------------------------------------------------------------------------------TTAATGTTTCATT---GTTGC-------T------AAATTGCATGAACTCAT-------------CCATGT---CACTAAACAC-------------------------------------TCTTAAAAGT------------T-------------TTCGTAAGTAG--TACTAATGCCA--------------GCT----------------------TTCTGTGTGACTTTCTACTTTTAAGTCCCAGCATTAA-TAT-GT-----------------------------------------------------------------------------------------------ATATATTC-TTTGCC------------------------------TTT---GAAATTTAGAACCTTCCCGCCTACGAGGACGTCTTACGGCAGGTGTTCGAAGCCAACAASizeHit CountTotal NormTotal
No Reads
dp5
CACGCGCCTTCAAGCGTATGTTCCCGAGCTGGGAGGACAACTACTGGCAGGTTAGTGAGCC--GCAG--GTTGAGGCT---A----------ACTAGTCTCCGCATAAATC--C-----A-------------------------------TAATCGT-AACAATTTGTAATTGCTTTCATCACTGTG----GTGTGCTTT-------------------------GT-----GTGCTTGTG-------------CATTGTGCATTGCTTAACCTTAA-------------ACACGT---CACTAAACAT-------------------------------------ACTAAAAACT------------TTCGCCA-ATGTCATCCGTGAGTAGAAGACTAATGCATTA-----------GTCG----------------------CAT------GCTAGTATTTG-----------------------------TTGA-GGTGGA----------------------------------------------------CTACATTTTCTGTATAACTAATCGCA-AT----ATATT---------------------------------CTTCGCCCATCTACAGACATTGCCTTCCTACGAGGACGTCAAGCAGCAAGTGCTTGATGCTAACAASizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCTTCCTACGAGGACGTCA.........................2311.0010100000000
...........................GCTGGGAGGACAACTACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................AACT------------TTCGCCA-ATGTCATCCGTGAG................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................TGTTCCCGAGCTGGGAGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
...............GTATGTTCCCGAGCTGGGAGGACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCTTCCTACGAGGACGTC..........................2211.0010100000000
.....................TCCCGAGCTGGGAGGACAACTACTGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.................................AGGACAACTACTGGCAGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.1410000000001
droPer2
CACGCGCCTTCAAGCGTATGTTCCCGAGCTGGGAGGACAACTACTGGCAGGTTAGTGAGCC--GCAG--GTTGAGGCT---A----------ACTAGTCTCCGCATAAATC--C-----A-------------------------------TAATCGT-AACAATTTGTAATTGCTTTCATCACTTCG----GTGTGCTTT-------------------------GT-----GTGCTTGTG-------------CATTGTGCATTGCTTAACCTTAA-------------ACACGT---CACTAAACAT-------------------------------------ACTAAAAACT------------TTCGCCA-ATGTCATCCGTGAGTAGAAGACTAATGCATTA-----------GTCG----------------------CAT------GCTAGCGTTCG-----------------------------TTGA-GGTAGA----------------------------------------------------CTACATTTTCTGTATAACTAATCGCA-AT----TTATT---------------------------------CTTCGCCCATCTACAGACATTGCCTTCCTACGAGGACGTCAAGCAGCAAGTGCTTGATGCTAACAASizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
..............................GGGAGGACAACTACTGGCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................GAGGACAACTACTGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..............CGTATGTTCCCGAGCTGGGAGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCAAGCAGCAAGTGCTT...........2111.001001000
..............................GGGAGGACAACTACTGGCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTACGAGGACGTCAAG.......................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGCCTTCCTACGAGGACGTCA.........................2611.001000010
droWil2
CACGCGTCTTCAAGCGTATGTTCCCCGCCTGGAATGATGACTACTGGCAGGTTGGTTGAGC--CA-----------------CAT--------------AACTAACTCT-ATATATAACAAAATTGC---ATGCGTTTTATT-----------------------------TTTCCTTCAACACTGTTTTTTTTGTGTATTGTTTGCCCATTTACTAACAACAATCAT-----CTACTCGAT-------------CAATGTGCAT----------------------------------------------------------------------------------------------------------------------TGCGTAAGTATATTTC-AAGGCATGTCTCATGTATTATTCA----------------------TAA------TCCAACATT-----------------AA------------T----------------AGTTGTTTGAATTGTTTTAAACTACTCTAATAATT-----GTTTCTC--------------------------------TC-TTTTGC------------------------------TT---CAATCAACAGAGTCTACCATCGTACGAGGACATTAAGCGACAGGTGCTTGATGCCAACAASizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTACGAGGACATTAAGCGACA..................2411.00101000
.................................................................................................................................................................................................................................CAT-----CTACTCGAT-------------CAATGTGCAT----------------------------------------------------------------------------------------------------------------------TGC.....................................................................................................................................................................................................................................................................................................................2511.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCTACCATCGTACGAGGA..............................2111.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTACCATCGTACGAGGACA............................2211.00110000
.......CTTCAAGCGTATGTTCCCCGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCATCGTACGAGGAC.............................1811.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------T----------------AGTTGTTTGAATTGTTTT.....................................................................................................................................................................2011.00100001
.................................ATGATGACTACTGGCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33100010
droVir3
CGGGCGCCTTCAAGCGCATGTTCCCCGCCTGGGAGGACAGCTACTGGCAGGTGAGTAGATC--GCTGGCCAACTGA--ATCGCAT--------------GCCACATTCAAATACATAA--CAATCGC---CTGCTTT-----------------------------------------------------------------------------------------GCTTAATCTTGTT---CTCGC-------T------CACGCTCACACACTCATGCCTGATCCCAA-ACACTC---GACTTGAT-CGGTGAGTGAGTATC-TCGGCG-------------------------------------------------------------------------------------------------------------------------------CCCACAAGTCCAGCAGCT-CACAAATCAT--TCC-------AC----------AATCTCCCCC----------------------ATTC-----CTTA-A--------------------------A------CACTT--TATTGATCTTCGC-------------------TTT---TCATCACAGACCCTGCCCTCCTATGAGGACATCAAACGCCAGATTATGGATGCCAATAASizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
...............GCATGTTCCCCGCCTGGGAGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000100000000000000010000000000000000000000000000000000000000000
.........................CGCCTGGGAGGACAGCTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000010000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCTCCTATGAGGACATC..........................2011.001001000000000000000000000000000000000000000000000000000000000000
...............GCATGTTCCCCGCCTGGGAGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000100000000000000000000000000000000000000000000000
.................ATGTTCCCCGCCTGGGAGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
..........................GCCTGGGAGGACAGCTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTGCCCTCCTATGAGGACATCAA........................2711.001001000000000000000000000000000000000000000000000000000000000000
...................GTTCCCCGCCTGGGAGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
.......CTTCAAGCGCATGTTCCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCTCCTATGAGGACATC..........................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCCCTCCTATGAGGACATC..........................2211.001000000000000000100000000000000000000000000000000000000000000000
droMoj3
CTCGCGTCTTCAAACGCATGTTCCCCTCTTGGGACGACAACTACTGGCAGGTTGGTAAAAC--TCTAATGAAATCA--ATTC----------GTTGCTCTTCACATTGAAA--CATAA--TAATCGC---CTGCTTT-----------------------------------------------------------------------------------------TCATAATTCCGTT---TTCGC-----------------------------ATGTCTGATATCAA-ATACTC---CACTGAATACTGTACGTGAGTATT-TCAGCGCCTAATGCTTAT--AAATCATATATCATTTAAC-AATTTCT----------------------------TCTAC-TAC-----------CTT-TG--------------------AAT------GC---------------------------------------------------------------------------------------AT----------------------------------------------------T-TTGAATTGTGT-------------------TT---CCCTTTGTAGACCCTGCCTTCCTATGAGGACATCAAACGTCAGGTTCTGGATGCCAACAASizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
......................CCCCTCTTGGGACGACAACTACTGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.004000040
................................GACGACAACTACTGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.004100030
.....................TCCCCTCTTGGGACGACAACTACTGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.002000020
...............GCATGTTCCCCTCTTGGGACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGTCAGGTTCTGGATG.......2011.001100000
......................CCCCTCTTGGGACGACAACTACTGGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
.................................ACGACAACTACTGGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGTCAGGTTCTGGATGCCAAC..2511.001100000
.............................TGGGACGACAACTACTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAACGTCAGGTTCTGGATGCCA....2411.001000100
.......................CCCTCTTGGGACGACAACTACTGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
droGri2
CAAGGGCCTTCAAGCGCATGTTCCCCAGCTGGGAGGACAACTACTGGCAGGTTAGTAGATC--GTAT--TGCACATTC---A----------ATAATCATTCCATA----CTAAATAA--TCATCAC---CTGGCT------------------------------------------------------------------------------------------AATTAATCTGGCT---CCCGCTGGCTGAT------TCA------------ATGCATGACCTCAAAACACTTAAACACTGCTT-ATGTGAGTGAGTATTTTCAGCACCTAGTAAATATTCACATTATTCACCACTCAATTAACTTGC----------------------------AACACACAT-----------CAT-TGATT-------------------C------AC---------------------------------------------------------------------------------------AT----------------------------------------------------T-TTAAATTGAAACTATTTTAATGAATTATTTTAATTGCATTCTTAGAATCTGCCTTCATATGAGGACATCAAACGCCAGGTTCTGGATGCTAACAASizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCAGGTTCTGGATGCTA....2112.00220
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAAACGCCAGGTTCTGGATGC......2611.00110
CAAGGGCCTTCAAGCGCATGTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
.....................TCCCCAGCTGGGAGGACAACTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGGTTCTGGATGCT.....1911.00110
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTTCATATGAGGACATC..........................1911.00110
....................TTCCCCAGCTGGGAGGACAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
...............GCATGTTCCCCAGCTGGGAGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
......................CCCCAGCTGGGAGGACAACTACTGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
......................CCCCAGCTGGGAGGACAACTACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
.................ATGTTCCCCAGCTGGGAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
.AAGGGCCTTCAAGCGCATGTTCCCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
...........AAGCGCATGTTCCCCAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.....................TCCCCAGCTGGGAGGACAACTACTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
......................CCCCAGCTGGGAGGACAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATGAGGACATCAAAC......................1911.00110
.........................CAGCTGGGAGGACAACTACTGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
..AGGGCCTTCAAGCGCATGTTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
.................ATGTTCCCCAGCTGGGAGGACAACTACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110
..........CAAGCGCATGTTCCCCAGCTGGGAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101
..............................GGGAGGACAACTACTGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.AAGGGCCTTCAAGCGCATGTTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
..............CGCATGTTCCCCAGCTGGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 05/18/2015 at 07:10 PM