ID:

dsi_22294

 Coordinate:

2r:5606718-5606867 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5606868_5606965_+]; exon [2r_5606868_5606965_+]; intron [2r_5605728_5606867_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAATGCTGGGGCGCCACTGCCTGGACTCGGTGGTTTCTTGCTGTGGGGGCTGGAGATATCCATACAGCTAGCGCCATCATTGCACAAAAGATCCATTTTTGAAATCTGGCCACGACAAAATTTAGTAATGCGTGTACTCCTATTATTGTTATATTGGCAATGTTGATTTAACAACTTTTCAATGCCTTCTTTCTTTTAAGAGTAACCGGGCGAGTCAACCTGATAATTAACCAGATGAACCGGAACGCGG
**************************************************.((((((((.(((...(((((.((((..(((.((.((((......)))))).))).))))...........))))).))).)))).)))).....((((((.((((((...)))))).))))))..........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
....................................................................TAGCGTCATCTTTGCACAGAA................................................................................................................................................................. 21 3 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................................................................................................................TGCAAGTAACCGGGCGAGTCAACCTGA........................... 27 3 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TAACCGGGCGAGTCAAC............................... 17 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................TGAACCGGGACGCGG 15 1 4 1.00 4 3 0 1 0 0 0 0
............................................................................................................................................................................................................ACCGGGCGAGTCAACCTGATAATTAAC................... 27 0 1 1.00 1 0 0 0 0 1 0 0
..............................................................................................................................................................................................................CGGGCGAGTCAACCTGATAATTAACCAGA............... 29 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................TTCTTTTAAGAGTAACCGGGC....................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................ATTAACCAGATGAAACGGA...... 19 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................TAGCGTCATCTTTGCACAGA.................................................................................................................................................................. 20 3 6 0.67 4 4 0 0 0 0 0 0
.................................................................................................TTTGAAATCTGGCCCCTA....................................................................................................................................... 18 2 7 0.43 3 0 0 0 0 0 3 0
.......................................................................................................................................................................................................GAGTAACGGGGCGAGCCA................................. 18 2 3 0.33 1 0 1 0 0 0 0 0
..........................................................................................................................................................TGCCAACGTTGATTTAAC.............................................................................. 18 2 5 0.20 1 0 0 0 1 0 0 0
.AATGCAGGGGCGCCA.......................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................GATGAACCGGAAGCCGG 17 2 20 0.15 3 1 0 1 0 0 0 1
....................................................................................................................................................................................AAAGCCTTCTTTTTTTTACGA................................................. 21 3 13 0.08 1 1 0 0 0 0 0 0
.............................................................................................CAAATTTGAAATCTGGCC........................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 1 0
........................ACGCGGTGATTTCTTGCTC............................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................ATCCCGATGAACCCGAACG... 19 3 16 0.06 1 0 1 0 0 0 0 0

Anti-sense strand reads

GTTACGACCCCGCGGTGACGGACCTGAGCCACCAAAGAACGACACCCCCGACCTCTATAGGTATGTCGATCGCGGTAGTAACGTGTTTTCTAGGTAAAAACTTTAGACCGGTGCTGTTTTAAATCATTACGCACATGAGGATAATAACAATATAACCGTTACAACTAAATTGTTGAAAAGTTACGGAAGAAAGAAAATTCTCATTGGCCCGCTCAGTTGGACTATTAATTGGTCTACTTGGCCTTGCGCC
**************************************************.((((((((.(((...(((((.((((..(((.((.((((......)))))).))).))))...........))))).))).)))).)))).....((((((.((((((...)))))).))))))..........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR1275487
Male larvae		 SRR553485
Chicharo_3 day-old ovaries
....................................................................................GTTCTCTAGGCAACAACTTT.................................................................................................................................................. 20 3 6 10.17 61 33 0 13 6 6 0 1 1 1 0
.....................................................................................TTCTCTAGGCAACAACTTT.................................................................................................................................................. 19 3 20 1.75 35 16 0 4 11 3 0 0 0 0 1
.......................................................................GTGGTAGTAACGTGTTTT................................................................................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................CCGGTGCTGTTTTAAATCAT........................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGGCCCGCTCAGTTGGACTA.......................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........CGAGGAGACTGACCTGAGC............................................................................................................................................................................................................................. 19 3 20 0.70 14 0 14 0 0 0 0 0 0 0 0
.................................AAAGAACGACACCCCCGA....................................................................................................................................................................................................... 18 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..........................................................................GTAGTAACGTGTTTTCC............................................................................................................................................................... 17 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................................................................................TGTTTTCTAGGTAAA........................................................................................................................................................ 15 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GGTATACTTGGCCTTGTG.. 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.....................................................TCCATAGGTATGTCGAG.................................................................................................................................................................................... 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0
....................................................................................GTTCTCTAGGCAATAACTT................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................................GTAACGCGTTGTCTAGG............................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Generated: 04/23/2015 at 06:47 PM