ID:

dsi_22293

 Coordinate:

3l:11415840-11415989 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.2 -11.8 -11.7

Flybase annnotation

CDS [3l_11415990_11416089_-]; exon [3l_11415990_11416253_-]; intron [3l_11413811_11415989_-]

No Repeatable elements found

mature
star
  1. 2l:587418-587432 +
  2. 2l:2781162-2781176 +
  3. 2l:6230200-6230214 +
  4. 2l:12487602-12487616 +
  5. 2l:18959107-18959121 -
  6. 2l:20036637-20036651 +
  7. 3l:6860280-6860294 -
  8. 3l:7262542-7262556 -
  9. 3l:8126037-8126051 -
  10. 3l:8803224-8803238 +
  11. dsi_22293  3l:11415908-11415922 -
  12. 3l:18149033-18149047 +
  13. 3r:7397097-7397111 +
  14. 3r:18262600-18262614 -
  15. x:8629180-8629194 -

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGCGTTGTGGATGCAGCAATTTACTCCCAGCCCGCCATCTTCCATCCTGGTAAGGATTTATTCATGAAATTGTTGTAATATTATGTTTTTTTTGTGTCAGAATCAGTTTGTTATTAGTTTGTTTTTTTGTTTTGCTCTTAGTTTGAGTTAACTTCATTTAAATTCAGTTGCTATTGTTTCCAACATATAAACAGATTGATATGCCAATTTAATGACCAATTAAGCTAAAAGCTATAATATACAAACTAC
*********************************************************************************************************************((((((((...((((..((...(((((((((((...........)))))))..))))..))....))))...))))))))..*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
..................................................................................................................................................................................TTCCAACATATAAACAGATTG................................................... 21 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................AAATTCCGTTGCTAGTGTTT...................................................................... 20 2 2 0.50 1 0 1 0 0 0
................................................................................................................................................................AAATTCCGTTGCTAGTGTTTT..................................................................... 21 3 6 0.33 2 0 2 0 0 0
.............................................................................................................TATTATTATTTTGTTTTTTTGTTTTGA.................................................................................................................. 27 3 12 0.08 1 0 0 1 0 0
.....................................................................................................................GTTTGTTTTTTTGTT...................................................................................................................... 15 0 15 0.07 1 0 0 0 1 0
...................ATTTACTCCTAGCCGG....................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

GTCGCAACACCTACGTCGTTAAATGAGGGTCGGGCGGTAGAAGGTAGGACCATTCCTAAATAAGTACTTTAACAACATTATAATACAAAAAAAACACAGTCTTAGTCAAACAATAATCAAACAAAAAAACAAAACGAGAATCAAACTCAATTGAAGTAAATTTAAGTCAACGATAACAAAGGTTGTATATTTGTCTAACTATACGGTTAAATTACTGGTTAATTCGATTTTCGATATTATATGTTTGATG
***************************************************((((((((...((((..((...(((((((((((...........)))))))..))))..))....))))...))))))))..********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.....................................GAGGAGGTAGGACCATTACTAA............................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
...............................................................................................................AATAGTCATACAAAAAAACAAAA.................................................................................................................... 23 2 1 1.00 1 0 0 1 0 0
......................ATGTGGGTCGGGCAGTAG.................................................................................................................................................................................................................. 18 2 3 0.67 2 2 0 0 0 0
.............................CCGGGCGGCAGAAGGTAGG.......................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0
.......................................................................................................................................GAGAAGCAAACTCAAT................................................................................................... 16 1 4 0.25 1 1 0 0 0 0
............................................................................................................................AAAAACAAAACGCGAATCAT.......................................................................................................... 20 2 4 0.25 1 1 0 0 0 0
.........................................................................................................................................................................................TATGTATGTCTAACTATAAGGT........................................... 22 3 4 0.25 1 0 1 0 0 0
...............................................................................................................................................................................AAAAAGGTTGCATATTTGTAT...................................................... 21 3 15 0.07 1 0 0 0 1 0
........................................................................................................................................................................................................................................GATGTTATATGTTTG... 15 1 20 0.05 1 0 0 0 0 1
...........................................................................................................................................................................................GATTTGCCTAGCTATACGG............................................ 19 3 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 06:35 AM