ID:

dsi_22270

 Coordinate:

3l:7988197-7988346 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.9 -33.8 -33.8

Flybase annnotation

CDS [3l_7988347_7988369_-]; five_prime_UTR [3l_7988370_7988446_-]; exon [3l_7988347_7988446_-]; intron [3l_7987828_7988346_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGTCCCGTACTTTTCCACGACCACCGATGAAGTTCTACGCGGGAGAAGGGTAAGCTATCGAGCTTGCATACGTTCACTTGTGGATCGGGGATCGCATTCGAATTGCACTGGGCGGACCGCCGTTTGTTTTGGTTTTTGCGCGGCTTAATTACAATTACATTTTGCATTCATTAAGAATTCCGTGACCAGGTTTCATGCGACTGGCCCAGCACTGTGGGCTCCACTGGGACTACTCATTCATAAGTACAG
**************************************************(((((((....)))))))...(((.......(((.(((.(((..(((.......))).(((.(((((..((((.......)))).))))).)))((((((..(((.......))).....))))))...))).))))))........)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M053
female body
 M023
head
 M024
male body		 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR1275487
Male larvae
.......................................................................................................................................................................................TGACTAGATTTCATGCGTCT............................................... 20 3 3 2.33 7 0 0 2 0 0 2 1 0 0 1 1 0 0
...............................................................................TGGGGATCGGGGATTGCA......................................................................................................................................................... 18 2 20 1.30 26 26 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTGCATACGTTCACTTGT........................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................GATGAAGTTCTACGCGGGA............................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................CATACGTTCACTTGTGGATCGGG................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TCGGGGATCGCATTCGAATTG................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................ACTTGTGGATCGGGG............................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATGCGACTGGCCCAGCACTGG.................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................TGACTTGTGGATCGGAG............................................................................................................................................................... 17 2 13 0.85 11 10 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................ACTTGTGGATCGGAG............................................................................................................................................................... 15 1 6 0.67 4 4 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGACTTGTGGATAGGGG............................................................................................................................................................... 17 2 19 0.47 9 2 0 0 0 0 0 3 0 3 1 0 0 0
..........................................................................TGACTTGTGGATCGG................................................................................................................................................................. 15 1 11 0.45 5 4 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................ATGACTTGTGGATCGGGG............................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGGCGGACCGCGGGTTATT......................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................GATGACTTGTGGATCGGAG............................................................................................................................................................... 19 3 17 0.24 4 3 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................CTTGTGGATAGGGGA.............................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................AACTCTAAGCGGGAGAAGGG....................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CACTTGGACTACACATTC.......... 18 2 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................CTTGTGGGTCGGGGA.............................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................ATTAAGATTTCCGGTACCA............................................................. 19 3 17 0.12 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGGCGGACCGCGTGTTGTT......................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................TTACTTGTGGATAGGGG............................................................................................................................................................... 17 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................TCACTGTGGGCTCCA.......................... 15 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGCGGATCGGGGATTGCA......................................................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGACTAGATTTCATGCGTC................................................ 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................GGATCGGGGATTGCA......................................................................................................................................................... 15 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CTTGTGGGTAGGGGATCTC.......................................................................................................................................................... 19 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................AGCCGGACCGCCGTTTTTT......................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................CTTGTGGGTAGGGGATCT........................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................TCGTTAAGAAATCCGTGAG............................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGACTAGATTTCATGCGAA................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GACAGGGCATGAAAAGGTGCTGGTGGCTACTTCAAGATGCGCCCTCTTCCCATTCGATAGCTCGAACGTATGCAAGTGAACACCTAGCCCCTAGCGTAAGCTTAACGTGACCCGCCTGGCGGCAAACAAAACCAAAAACGCGCCGAATTAATGTTAATGTAAAACGTAAGTAATTCTTAAGGCACTGGTCCAAAGTACGCTGACCGGGTCGTGACACCCGAGGTGACCCTGATGAGTAAGTATTCATGTC
**************************************************(((((((....)))))))...(((.......(((.(((.(((..(((.......))).(((.(((((..((((.......)))).))))).)))((((((..(((.......))).....))))))...))).))))))........)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.................................................................................................................................................................................TAAGGCACTGGTCCAAAGTACGCTG................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................CCTAGCCCCTAGCGTAAG...................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
..............AGGTGCTGGTGGCTACTTCAA....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
....................TGGTGGCTACTTCAAGATGCG................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................GGTGGCTACTTCAAGATGCGC................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGAGGTGACCCTGATGAGT............. 19 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................GACTGGTCCACAGTACGCT................................................. 19 2 3 0.33 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................AAGGCACTGGTCCGA......................................................... 15 1 7 0.14 1 0 0 0 0 0 0 1 0
...................................................................................................GCTGAATGGGACCCGCCTG.................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 1 0
..........GACAGAGTGCTGGTGGCTA............................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................GGTCCAAAGTGCACAGAC.............................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:35 AM