ID:

dsi_22268

 Coordinate:

2r:4301722-4301984 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-55.7 -55.6 -55.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACGCGCATCGCACGGAGTTACCACTTTTTTGTCGCGTGGAAATGCCGCTGGTAATTGGGTGCAGTAAATACAGATAAGAACGGGAGTAGCACACGTGCTCCGGAGTGGAGTAGTGAGTTAATCTCACCAGACCAATTCCAGCTCTGGACAATCGCTTGTTAGTTTTTTTTTTTTGTTTTGGAACAATGGGCCTTGGCGGATTGTGCCAAAACATTCAAAATGCGTTCTACGATGACATCATCGACATTGTGTTTTAATCCGCCTCTCCGTTCCATCTGTTTGGTTTCTGTGTTTACATGTGCATGTATTTTAGATCAACTTTAGACCGCACAGCGAACGCCAGATTGTTTGAAGCACTCACCA
******************************************************************(((((((...(((((((((.(((((..((((.(((((((((((((.(((((.....))))).......)))))).)))))))))..))..))))).)))........((((((((.(((((..((....))..))))).)))))))).........)))))).(((((....)))))...)))))))............************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 O002
Head
 M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
ACGCGCATCGCACGGAGT......................................................................................................................................................................................................................................................................................................................................................... 18 0 1 63.00 63 47 0 8 0 8 0 0 0 0 0 0 0
ACGCGCATCGCACGGAGG......................................................................................................................................................................................................................................................................................................................................................... 18 1 1 8.00 8 7 0 0 0 1 0 0 0 0 0 0 0
...........................TTTGTCGCGTGGAAATGCC............................................................................................................................................................................................................................................................................................................................. 19 0 1 4.00 4 0 0 0 4 0 0 0 0 0 0 0 0
ACGCGCATCGCACGGAGTTACC..................................................................................................................................................................................................................................................................................................................................................... 22 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
ACGCGCATCGCACGGAGTT........................................................................................................................................................................................................................................................................................................................................................ 19 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GCACAGCGAACGCCAGATTGTTTGAAG......... 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
....................................................................TACAGATAAGAACGGGAGTAT.................................................................................................................................................................................................................................................................................. 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TTTGGACCGCACAGCGAACGC....................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.CGCGCATCGCACGGAGTT........................................................................................................................................................................................................................................................................................................................................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................TCGCGTGGAAATGCCGCTGG........................................................................................................................................................................................................................................................................................................................ 20 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0
.........................TTTTTGTCGCGTCGAAATG............................................................................................................................................................................................................................................................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TGTGTTTTAATCCGCCTC.................................................................................................. 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..............GAGTTACCACTTTTTTGTCGCG....................................................................................................................................................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
................................CGCGTGGAAATGCCGCTGG........................................................................................................................................................................................................................................................................................................................ 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
..................................................................AATACAGATAAGAACGGGAGT.................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................AGATCAACTTTAGACCGCACA............................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
ACGAGCATAGCACGGAGTTACCA.................................................................................................................................................................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
AAGCGCATCGCACGGAGTTACC..................................................................................................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................CGTGGAAATGCCGCTGGTAAT.................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................TCCGGAGTGGAGTAGTGGGTT.................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTTGGAACAATGGGCCTTGGC...................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................TTTGTCGCGTGGAAATGTC............................................................................................................................................................................................................................................................................................................................. 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................CAATTCCAGCTCTGGACAATC.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................ACAGCGAACGCCAGATTGTTTGAAGCA....... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GCACAGCGAACGCCAGATTGTTT............. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TCAACTTTAGACCGCACAGCG............................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................CAGATAAGAACGGGAGTAGCA................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................ACAGATAAGAACGGGAGTAGCA................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................TGGAACAATGGGCCTTGGCGGTAT................................................................................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
ACGCGCATCGCACGGAGTTA....................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................CGCACAGCGAACGCCAGATTGTTT............. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................TAAGAACGGGAGTAGCACAC............................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..GCGCATCGCACGGAGTTACC..................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGGAACAATGGGCCTTGGCGTA................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................ATTTTAGATCAACTTTAGACCGC.................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................CAATTCCAGCTCTGGACAATCGCT............................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.CGCGCATCGCACGGAGTTACC..................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................AATACAGATAAGAACGGGAG..................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................TACTTTTTTGTCGCGTGGAA.................................................................................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................AAATACAGATAAGAGCGGGAG..................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
ACGCGCATCGCACGGAGTTACCA.................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................AGAACGGGAGTAGCACACG............................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.CGCGCATCGCACGGAGTTACCA.................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.CGCGCATCGCACGGAGTTAC...................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
ACGCGCATCGCACGGAGTTACCACT.................................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GCACAGCGAACGCCAGATTGT............... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................AAATACAGATAAGAACGGGAG..................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....CATCGCACGGAGTTACCACTTTT............................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
ACGCGCATCGCACGGAGC......................................................................................................................................................................................................................................................................................................................................................... 18 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TAGATCAACTTTAGACCGCATTT.............................. 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTCTTTTTCGGTTTTGGAACA.................................................................................................................................................................................. 21 3 17 0.41 7 0 0 0 0 0 0 0 0 6 1 0 0
........................................GATGCCGCTAGCAATTGGGTG.............................................................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................GCTAGTAATTGGGTGTAG........................................................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................GATAAGGACGGGACTAACAC............................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTATTTTTTTTGTTTTGTTTTGGAAAA.................................................................................................................................................................................. 27 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................TTCTTTTTCGGTTTTGGAAC................................................................................................................................................................................... 20 3 20 0.20 4 0 0 0 0 0 0 0 0 3 1 0 0
...........................................GACGCTGGTAATTGG................................................................................................................................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................................................................ACAGCGAACGCCAGG................... 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................................................................................GCACAGCGACCGCCA..................... 15 1 16 0.13 2 0 0 0 0 0 0 0 0 2 0 0 0
.....................................................................................................................................................................TCTTTTTCGGTTTTGGAACA.................................................................................................................................................................................. 20 3 20 0.10 2 0 0 0 0 0 0 0 0 1 1 0 0
.....................................................................................................................................................................TTTTTTTATGGTGTGGAACAA................................................................................................................................................................................. 21 3 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0
.......................................................................................................................................TTCCAGCTCTTGACATTCGG................................................................................................................................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................TTTTTTTGTTGTTTTGGA..................................................................................................................................................................................... 18 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................GCTGATCAACTTTAGACCG................................... 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................CTTTTTCGGTTTTGGAACAA................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................AGATCAACTTCCGACCGGA................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGCGCGTAGCGTGCCTCAATGGTGAAAAAACAGCGCACCTTTACGGCGACCATTAACCCACGTCATTTATGTCTATTCTTGCCCTCATCGTGTGCACGAGGCCTCACCTCATCACTCAATTAGAGTGGTCTGGTTAAGGTCGAGACCTGTTAGCGAACAATCAAAAAAAAAAAACAAAACCTTGTTACCCGGAACCGCCTAACACGGTTTTGTAAGTTTTACGCAAGATGCTACTGTAGTAGCTGTAACACAAAATTAGGCGGAGAGGCAAGGTAGACAAACCAAAGACACAAATGTACACGTACATAAAATCTAGTTGAAATCTGGCGTGTCGCTTGCGGTCTAACAAACTTCGTGAGTGGT
**************************************************************************************************(((((((...(((((((((.(((((..((((.(((((((((((((.(((((.....))))).......)))))).)))))))))..))..))))).)))........((((((((.(((((..((....))..))))).)))))))).........)))))).(((((....)))))...)))))))............****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...........................................................................................................................................................................................................................................GTAGTAGCTGTAACACAA.............................................................................................................. 18 0 1 3.00 3 0 2 0 0 1 0 0 0
....................................................................................................................................................................AAGAAAAAGCCAAAACCTTGT.................................................................................................................................................................................. 21 3 17 2.59 44 0 0 0 37 0 0 2 5
..........................................................................................................................................................................................................................................................................GGCAAGGTAGACAAACCAAA............................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................AAAACAGCGCACCTTTACGGC............................................................................................................................................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0
..........................................................................................................................................................................................................................TTACGCAAGATGCTACTGTAG............................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................TTTGGAGAGGCAAGGTAGACAA................................................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AAGGCGGAGAGGCAAGGTAGA...................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................GTAGCTGTAACACAAAATTAG........................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0
...........................................................ACGTCATTTATGTCTATTCTTGCCCTC..................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................CCACGTCATTTATGTCTATTCTTGC......................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................ATTAGGCGGAGAGGCAAGGT......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................CCTCATCGTGTGCACGAG....................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
.......................................................................................................................................ATGGTCGAGACCTGTTAGCGAAC............................................................................................................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................ATTTATGTCTATTCTTGCC........................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................CACCTCATCACTCAATTAGAG.............................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................TAGGCGGAGAGGCAAGGTAGA...................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................GTAGCTGTAACACAAAATTAGGC...................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CGGAGAGGCAAGGTAGGCAGA.................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTTTACGCAAGATGCTACTGTA............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................ATCTGGTTAAGGTCGAGGC......................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................ATAAAATCTAGTTGA........................................... 15 0 8 0.50 4 0 0 0 0 0 3 1 0
....................................................................................................................................................................AAGAAAAAGCCAAAACCTTG................................................................................................................................................................................... 20 3 20 0.40 8 0 0 0 7 0 0 0 1
..........................................................................................................................................GTCGAGGCCTGTTAGCGGGCA............................................................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................CACAACATTAGGCGG.................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................................................TTTCGGAGAGGCAAGGTAGA...................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................AGAAAAAGCCAAAACCTTGT.................................................................................................................................................................................. 20 3 20 0.15 3 0 0 0 3 0 0 0 0
....................................................................................................................................................................................................................................................................................................................AAATCGAGTTGAAATC....................................... 16 1 9 0.11 1 0 0 0 0 0 1 0 0
.....................................................................................CAACGTGTGCACAAGGC..................................................................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................AAAAAAAAATAACAAGACCTTAT.................................................................................................................................................................................. 23 3 16 0.06 1 0 0 0 1 0 0 0 0
.....................................................................TGTATATTCTTGACCTC..................................................................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 1 0
...........................................................................................................................................................................AAAAAAAACCTTGTTA................................................................................................................................................................................ 16 1 20 0.05 1 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................................................................................................AATCGAGTTGAAATC....................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:4301672-4302034 + dsi_22268 ACGCGCATCGCAC-------GGAGTTACCACTT--TTTTGTCGCGT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTAAATACAGATAAGAAC-G-----------------------GGAGTAGCA--------CACGTGCTCCGGAGT-GGAGTA------------------------------GTGAGT-----TAATCTC-------ACCA-----------GACCAATTCCA----G-------------CTCTGG---ACAATCG-----CTTGTTAGT-----------TTTTTTT---TTTTGT-TTTG---GAACAA-----TGGG-CCTTGGCGGATTGTGCCAAAACATTCAAAATGCGTTCT--------A---------------------CGATGACATCATCGACAT---TGT------G--TT-TTAATCCGCCTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------TTTACATGTGCATGTATTTTAGATCAACTTTAGACCGCACAGCGAACGC------CAGATTGTTTGAA---GCAC-----TCA--------CCA
droSec2 scaffold_1:1117439-1117806 + ACGCGCATCGCAC-------GGAGTTACTACTT--TTTTGTCGCGT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTAAATACAGATAAGAAC-G-----------------------GGCGTAGCA--------CACGTGCTCCGAAGT-GGAGGA------------------------------GTGAGT-----TAATCTC-------ACCA-----------GACCGATTCCAGCTCG-------------CCCTGC---ACAATCGTTTTGCTTGTTAGT-----------TTT---T---TTTTGT-TTTG---GAACAA-----TGGG-CC-AATGGGATTGTGCCAAAACATTCAAAATGCGTTCT--------A---------------------CGATGACATCATCGACAT---TGT------G--TT-TTAATCCGCCTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------TTTACATGTGCATGTATTTTAGATCAACTATAGACCGCACAGCGAACGC------CAGATTGTTTGAA---GCAC-----TCA--------CCA
dm3 chr2R:3454339-3454700 + ACGCGCATCGCAC-------GGAGTTACTACTT--TTTTGTCGCGT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTAAATAGAGATAAGAAC-G-----------------------GGCGTTGCA--------CACGTGCTCTGGAGT-GGAGTA------------------------------GTGAGT-----TAATCGC-------ACCA-----------GCCCTACTCCAGCTGA-------------CCCTGG---ACAATCGTTTGGCTTGTTAGT------------------TT-----AT-TTTG---GAACAA-----TGGG-CC-TGGCGGATTGTGCCAAAATATTTGAAATGCGTTCA--------A---------------------CGATGACATCATCGACAT---TGT------G--TT-TTAATCCGTCTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------TTTACATATGCATGTATTTTAGATCAACTATAGACCGCACAGCGAACGC------CAGATTGTTTGAA---GCAC-----TCA--------CCA
droEre2 scaffold_4929:19143012-19143366 - ACGCGCATCTCAC-------GGAGAAACAT-CT--TTTAGTCGGGT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTAAATAACGATAAGACC-T-----------------------TTCGATGCA--------CACGTGCTCCGGAGTGGGAGTA------------------------------GTGAAT-----TAATATG-------ACCTGC----------------TCCAGTTCG-------------CCCTAG---ACAATCGTTTTGCTTGTCAGT--------------------T-----T-TTTG---AAGCAC-----TGGG-TC-TGGCGGATTGTGCCAAAACAATCGAAATGCGTTTT--------G---------------------CGATGACATCATCGACAT---TGT------G--TT-TTAATCCGCCTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------TTTACATGTGCATGTATTTTAGAACAACTATAGACCGCACTGTGTACGT------CAGATTGTTTGAA---GCAC-----ACA--------CCC
droYak3 2L:16132247-16132615 + GCGCGCATCGCACG--------ATCTACTTCTTTTCGTTGTTG-GT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTAAATAAAGATAAGACC-A-----------------------GACGATGCA--------CACGTGCACCGGAGT-GGAGTT------------------------------ATAAAT-----TAATCTG----------------------GCCCTACTCCAGTTCG-------------CCCTGC---ACAGTGGCTTTGCATC------------TTTGCT-TGT-TT------T-TCTG---AAACAA-----TGGG-CC-TGGCGGATTGTGCCAAAACATTCGAACTGCGTTCT--------A---------------------CGATGACATCATCGACAT---TGT------G--TT-TTAAACTGACTAT-----------CCGTTCCATCTGTTTGGTT-----TCTGTGTTTATGTGTTTACATGTGCATGTATTTTAGAACAACTATAGACCGCACAGCGAACGC------CAGATTGTTTGAA---GCAC-----ACA--------CTA
droEug1 scf7180000409672:5471298-5471646 + ATACGCGTCGCACGG------GAGTTTC-TCTT--TGTTATTGCGT--GGAAATGCCG---------CTGGTAAATGTAAATAGG-TG--TAGTCTATAGAGATAAGCCC-A-----------------------GCGGATGCA--------CACGTGCATAA-GTT-GGAG-----------------------------------AAACGAGGT------GATTAATACCA--------------------------AC-TTGTATGGCCACC--TTTG--C-----------------------CTATTGTTATTAT-ATT-----T-TTTT---TAACAA-----TGGG-CC-TTGTGGATTGTGCCAAAACATTCGAAATGCGTTCT--------C---------------------CGATGACATCATCGACAT---TGT------T--TGCCTAATCTGCTTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------TTTATGTA--CAT-TATTTTAGAAAGACTTTAGGCCACACAACGTACGC------AAGAGTGATTAAA---AC--------------------A
droBia1 scf7180000302292:2679709-2680052 - AGGCGCGTCGCAC-------CGAGTTGA-TTTC--TGATTTTGCGT--GGAAATGCCG---------CTGGTAAATG------GG--G--CTCCAAGTGGAGATAACGCC-T-----------------------TCGGGTGCA--------CACGTGCACAG-----GGAGTT------------------------------GTGGAACAGGCT------GATTAATACCCATCAC----------------ACTGCG-------------CCCCACTTCGC-----------------------CACTT-------------TGAGC-TTGG---GAACAA-----GGGG-CC-CAGTGAAGTGTGCCAAAACATTCGAAATGCGTTCT--------C---------------------CGATGACATCATCGTCACCATTGTGATTGTG--TTTTTAATCCGCCTCT-----------CCGTTCCATCTGTTTGGCT-----TCTGTG--------TTGACGTA------TGTTTCAGGATTACTTTGGACCACACAACGAAGGT------AAACGATTTTGAG---GG--------------------A
droTak1 scf7180000416016:60147-60486 + CGGCGCGTCGCACGTCGCACGGAGTTTTATTTT--TGTTATTGCAT--GGAAATGCCG---------CTGGTAAATG------GG-CG--CAGCAAATAGAGATAAG----------------------------------GCA--------CACGTGCAT----GT-GGAGTT------------------------------GTGAAACAAGCT------GATAAATACCTATCAA----------------ACTCCA-------------CCCCGTTTCGC-----------------------CATTTTATT-CGT-GTT-----A-CTTG---AAACAA-----TGGG-CC-TAGTGGATTGTGCCAAAACATTCGAAATGCGTTCT--------A---------------------CGATGACATCATCGACAT---TGT------G--TTTTTAATCCGCTTCA-----------CCGTTCCATCTGTTTGGTT-----TCGGTG--------TTTACGTA------TATTTTAGAAAAACTTTGGACCACACAACGAACGA------AAGAGTGATTGAA---AG--------------------A
droEle1 scf7180000491347:299508-299846 + AGTCGCGTCGCAA-------GGAGTTAC-TTTT--TGTTATTGCGT--GGAAATGCCG---------CTGGTAAATG------GG-TG--TAGTAAATAGAGATAAAGCC----------------------------TCTGCA--------CACGTGTTGTG--------------------------------------------AAACGAACT------GATTATTACCTGCCGC----------------ACTTCG-------------CCCTGTTTC----------------CTAGTTTCTCAATT--------T---TTTTGTTTTCG---GAACAA-----TGGG-CC-TGGCGGATTGTGCCAAAACATTCAAAATGCGTTCT--------C---------------------CGATGACATCATCGTCAC---TGT------G--TTTTTAATTCGCTTCA-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------CCCACGTA------CATTTTAGAATTACTTTAAACCACACAACGAACGC------AAGAGATTTTGAA----CGC-----CGA--------CCA
droRho1 scf7180000780108:45769-46100 + AAGCGCGTCGCAC-------GGAGTTAT-TTTT--TGTTATTGCGT--GGAAATGCCG---------CTGGTAAATG------GG-TG--TAGTAAATAGAGATAAGACC----------------------------GATACA--------CACGTGTTGTG--------------------------------------------AAACGATCT------AATTAGTACCTGCCGT----------------ACTTCG-------------CCCTTTTTT---CTG------------ACTTTCCCATT-------------TTTTGTTTGGA---AAACAA-----TGGG-CC-TGGTGGATAGTGCCAAAACATTTAAAATGCGTTCT--------C---------------------CGATGACATCATCGACAT---TGT------G--TTTTTAATTCGCTTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------CTTACATA------TATTTTAGAAATACTTTAAACCACTCAACGAAGCC------AAGAAATTTTGAA---AC--------------------A
droFic1 scf7180000453948:215009-215348 + ATACGCGTCGTACGG------GAGTAAT-ACTT--TGTTGATGCGT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTTAATGGAGATAAGACC-AGCC-T---------------------TATTTA--------CACGTGCAT-------GGAGTG------------------------------GTGACACAAGCT------GATTAATATCAGCCGC----------------AGTTTG-------------CCCTGTTTCACAATT----------------CCCTTAT----------TTT-----T-ATTA---AAACAA-----TGGG-CC-AGGCGAATTGTGTCAAAACATTTCAAATGCGTTGT--------A---------------------CGATGACATCATCCACAT---TGT------G--TTTTTAATCCCCATCA-----------CCGTTCCATCTGTTTGGTT-----T-TGTG--------TTTACGTA------TATTTTAGAAAAACATAAGAACACACAACGAACGC------AAGAGTGCTTGAA---AC--------------------A
droKik1 scf7180000302355:654470-654801 - AGGCGCGTCGGA-----------AT------AT--TGTTATTGCGT--GGAAATGCGG---------CTGGTAAATT------GGTTG--TTAT-AATGCAGATAAGC-C-A-----------------------GTCGATGCA--------CATGTGTTGTGTTGT-GCCGGA------------------------------ATA--------------C----------------------GCCATATCGCCGCTCG-------------CTCCGT---ACAGTGTTTTTAAA---------------------------------A-CTT-------CAATGAATTAGG-CC-TGGCGAATTTGATTAAA---------TTGT-TTCTTTCCTATAA---------------------CGATGACATCATCCACGC---CGT------G--TTTTTAATTCGCCTCT-----------CCGTTCCATCTGTTTTGTT-----TCTGTG--------CTTGCGTA------CATTTTAGAAAAATCTTAGCCCCCACAACGACCGCGACCACAAGTATCTCTGAAAAAGCAA-----ACT-------CTCA
droAna3 scaffold_13266:9975017-9975352 + GAGTGCGTCGTGCGC------GAGT------TT--TGTTATT--GT--GGAAATGCCG---------CTGGTAAATA------GG-TG--TTGTAAATAATGATAAGAACTATTGG-------------------GGAGTTGCAGCCACTACCACGT-----------GGAGTG------------------------------GCTACATAACCG------GACTGCTAAC-GCCCCAATCCGGTCCA----------ATGTCGGT----------------------------------------CCATT----------------AT-TTCGGAAAAACAA-----TGGGACCTTAGTGAATAGTGCCAAAAG-------TGGCGT---------------------------------TGATGACATCACCGAGAC---AGT------GTTTT-TTAATTCACCTCT-----------CCGTTCCATCTGTT-ATTT-----TCTGTG--------TTTTCGTA------TATTTTAGAAAAATCTCTGTCTACACAACGAATGC------CAAAGTGTTTGAA---TCAA-----CGC--------ACA
droBip1 scf7180000396759:1691859-1692190 + GAGTGCGTCGTGCGC------GAGT------TT--TGTTATT--GT--GGAAATGCCG---------CTGGTAAATA--CATAGG-TG--TTGTAAATAATGATAAGAAT-ATTG--------------------GAAGTTGCAGCCACTACCACGT-----------GGAGTG------------------------------GCTACATAACCG------GATTAGTTAC-GCCTCGATCCGGTCCA----------ATTTCG-----------------GC-----------------------CAATT----------------AT-TTCGGAAAAACAA-----TGGGACCTTAGTGAATAGTGCCAAAA----------GCGG-CG--------T---------------------TGATGACATCACCGAGAC---AGT------GTTTT-TTAATTCACCTCT-----------CTGTTCCATCTGTT-GTTT-----TCTGTG--------TTTACGTA------TATTTTAGAAAAATCTTTGTCTACACAACGAATGC------CAAAGTGTTTGAA---TCA-------------------A
dp5 3:12289112-12289559 - GAGCGCAACGGACAA------GAAT------TT--T-GTATTGCGTATTGAAATGCCGCACTCCCTGCTGGTAAATA------G--TGTTTAGTAAATAGAGATAACT---AAGT-TTACCTAAGGCTAAAAGCGAAGAAAACA--------CACGTGCAATAAACG-GGAACAGTGCGCCGCTGATGGAGGGTTTCGGAAGGTGTGGAACATTGGAATATA-------G----------------CCA----------ATGTTGGTTGACTACTACTTTGCGT-----------------------CAATTAACG-TGG-GAT-----A-TTGA---AAACAA-----TGCGGTC-TTGTAATATGTGCCAAAACTTTTGACTTGCGTTCT--------CTGTCGGGTCGGTCGGTAATGCCGATGACATCATCATCAT---TGT------G--TT-T--ATGTGTTTCCC----------TCGTTCCATCTGTTTTGTT--------ATG--------CTTTCGTA------TATTTTAGATAAATCTGTACCCACACAACGAAAGCGAGTGCAAAAGTGTTTAAC---GCAAGATACCCGCTAGACGAGCG
droPer2 scaffold_44:470355-470802 - GAGCGCAACGGACAA------GAAT------TT--T-GTATTGCGTATTGAAATGCCGCACTCTATGCTGGTAAATA------G--TGCTTAGTAAATAGAGATAACT---AAGT-TTACCTAAAGCTAAAAGCGAAGAAAAAA--------CACGTGCAATAAACG-GGAGCAGTGCGCCGCTGATGGAGGGTTTCGGAAGGTGTGGAACATTGGAATATA-------G----------------CCA----------ATGTTGGTTGACTACTACTTTGCGT-----------------------CAATTAACG-TGG-GAT-----A-TTGA---AAACAA-----TGCGGTC-TTGTAATATGTGCCAAAACATTTGACTTGCGTTCT--------CTGTCGGGTCGGTCGGTAATGCCGATGACATCATCATCAT---TGT------G--TT-T--ATGTGTTTCCC----------TCGTTCCATCTGTTTTGTT--------ATG--------CTTTCGTA------TATTTTAGATAAATCTGTACCCACACAACGAAAGCGAGTGCAAAAGTGTTTAAC---GCAAGATACCCGCTAGACGAGCG
droWil2 scf2_1100000004382:244121-244258 - GATGACATCATCCCT------GAGA------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCAT---TGA------G--TT-TTGTTTCGTCTCTCTCTCCTAAATCCATTTCATCTGTTTTATATTGTTTC-GTG------TTTTTGCTTATACTT-TATTTTAGATAAAATTTAACCCATTCAACGCGCGC------GA-------------------------------------
droMoj3 scaffold_6496:9976465-9976482 + TGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTT---GAAA-----ACG--------GCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACGCGCATCGCAC-------GGAGTTACCACTT--TTTTGTCGCGT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTAAATACAGATAAGAAC-G-----------------------GGAGTAGCA--------CACGTGCTCCGGAGT-GGAGTA------------------------------GTGAGT-----TAATCTC-------ACCA-----------GACCAATTCCA----G-------------CTCTGG---ACAATCG-----CTTGTTAGT-----------TTTTTTT---TTTTGT-TTTG---GAACAA-----TGGG-CCTTGGCGGATTGTGCCAAAACATTCAAAATGCGTTCT--------A---------------------CGATGACATCATCGACAT---TGT------G--TT-TTAATCCGCCTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------TTTACATGTGCATGTATTTTAGATCAACTTTAGACCGCACAGCGAACGC------CAGATTGTTTGAA---GCAC-----TCA--------CCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
ACGCGCATCGCAC-------GGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18163.0063478000800000000000
ACGCGCATCGCAC-------GGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1818.00871000000000000000
....................................TTTGTCGCGT--GGAAATGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.00400400000000000000
ACGCGCATCGCAC-------GGAGTTACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.00440000000000000000
ACGCGCATCGCAC-------GGAGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.00400000400000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGCGAACGC------CAGATTGTTTGAA---G......................2712.00200200000000000000
.................................................................................................TACAGATAAGAAC-G-----------------------GGAGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
.CGCGCATCGCAC-------GGAGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
........................................TCGCGT--GGAAATGCCG---------CTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200002000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT------G--TT-TTAATCCGCCTC................................................................................................................................................1812.00200000200000000000
.....................GAGTTACCACTT--TTTTGTCGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200200000000000000
.........................................CGCGT--GGAAATGCCG---------CTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200000000002000000
...............................................................................................AATACAGATAAGAAC-G-----------------------GGAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACTTTAGACCGCACA.....................................................2111.00100000000000001000
...........................................CGT--GGAAATGCCG---------CTGGTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................TTTG---GAACAA-----TGGG-CCTTGGC.............................................................................................................................................................................................................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................CAATTCCA----G-------------CTCTGG---ACAATC......................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGAACGC------CAGATTGTTTGAA---GCA....................2711.00100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGCGAACGC------CAGATTGTTT.............................2311.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTTTAGACCGCACAGCG..................................................2111.00100000000000001000
...................................................................................................CAGATAAGAAC-G-----------------------GGAGTAGCA--------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..................................................................................................ACAGATAAGAAC-G-----------------------GGAGTAGCA--------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
ACGCGCATCGCAC-------GGAGTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACAGCGAACGC------CAGATTGTTT.............................2411.00100000000000100000
.......................................................................................................TAAGAAC-G-----------------------GGAGTAGCA--------CAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
..GCGCATCGCAC-------GGAGTTACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGATCAACTTTAGACCGC........................................................2311.00101000000000000000
.......................................................................................................................................................................................................................................................CAATTCCA----G-------------CTCTGG---ACAATCG-----CT..............................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.CGCGCATCGCAC-------GGAGTTACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
...............................................................................................AATACAGATAAGAAC-G-----------------------GGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
ACGCGCATCGCAC-------GGAGTTACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.........................................................................................................AGAAC-G-----------------------GGAGTAGCA--------CACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000001000
.CGCGCATCGCAC-------GGAGTTACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.CGCGCATCGCAC-------GGAGTTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
ACGCGCATCGCAC-------GGAGTTACCACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGCGAACGC------CAGATTGT...............................2111.00100100000000000000
..............................................................................................AAATACAGATAAGAAC-G-----------------------GGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.....CATCGCAC-------GGAGTTACCACTT--TT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
ACGCGCATCGCAC-------GGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.67220000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCAACTTTAGACCGCATTT....................................................2320.50100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGAACGC------CAGG...................................1580.13100000001000000000
droSec2
ACGCGCATCGCAC-------GGAGTTACTACTT--TTTTGTCGCGT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTAAATACAGATAAGAAC-G-----------------------GGCGTAGCA--------CACGTGCTCCGAAGT-GGAGGA------------------------------GTGAGT-----TAATCTC-------ACCA-----------GACCGATTCCAGCTCG-------------CCCTGC---ACAATCGTTTTGCTTGTTAGT-----------TTT---T---TTTTGT-TTTG---GAACAA-----TGGG-CC-AATGGGATTGTGCCAAAACATTCAAAATGCGTTCT--------A---------------------CGATGACATCATCGACAT---TGT------G--TT-TTAATCCGCCTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------TTTACATGTGCATGTATTTTAGATCAACTATAGACCGCACAGCGAACGC------CAGATTGTTTGAA---GCAC-----TCA--------CCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
ACGCGCATCGCAC-------GGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18117.00172069
.................................................................................................TACAGATAAGAAC-G-----------------------GGCGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
......................................................GCCG---------CTGGTAATTG------GG-TG--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGCGAACGC------CAGAT..................................1811.0010010
....................................TTTGTCGCGT--GGAAATGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
...................................................................................................................................................................................................................................................................................................................................................AACAA-----TGGG-CC-AATGGGA..........................................................................................................................................................................................................................................................1811.0010001
...............................................................................................AATACAGATAAGAAC-G-----------------------GGCGTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
...........................................................................................AGTAAATACAGATAAGAAC-G-----------------------GGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
........................................TCGCGT--GGAAATGCCG---------CT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTATAGACCGCACAGCGA.................................................2111.0010010
.CGCGCATCGCAC-------GGAGTTACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCTCT-----------CCGTTCCATC..........................................................................................................................1911.0010010
ACGCGCATCGCAC-------GGAGTTACTACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.CGCGCATCGCAC-------GGAGTTACTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
.CGCGCATCGCAC-------GGAGTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
ACGCGCATCGCAC-------GGAGTTACTACTT--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTT-----TCTGTG--------TTTACA........................................................................................1911.0010001
...............................TT--TTTTGTCGCGT--GGAAATGCCG---------CTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
ACGCGCATCGCAC-------GGAGTTACTAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
....................................................................TGGTAATTG------GG-TG--CAGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
................................................................................................ATACAGATAAGAAC-G-----------------------GGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGC------CAGATTGTTTGAA---GCAC-----TC............2311.0010010
ACGCGCATCGCAC-------GGAGTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
ACGCGCATCGCAC-------GGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310001
dm3
ACGCGCATCGCAC-------GGAGTTACTACTT--TTTTGTCGCGT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTAAATAGAGATAAGAAC-G-----------------------GGCGTTGCA--------CACGTGCTCTGGAGT-GGAGTA------------------------------GTGAGT-----TAATCGC-------ACCA-----------GCCCTACTCCAGCTGA-------------CCCTGG---ACAATCGTTTGGCTTGTTAGT------------------TT-----AT-TTTG---GAACAA-----TGGG-CC-TGGCGGATTGTGCCAAAATATTTGAAATGCGTTCA--------A---------------------CGATGACATCATCGACAT---TGT------G--TT-TTAATCCGTCTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------TTTACATATGCATGTATTTTAGATCAACTATAGACCGCACAGCGAACGC------CAGATTGTTTGAA---GCAC-----TCA--------CCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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............................................................................................................................................................................................................................................................................................................................................................................................GAAATGCGTTCA--------A---------------------CGATGACA........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATAGACCGCACAGCGAACG..............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.........................................................................ATTG------GG-TG--CAGTAAATAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................AAATAGAGATAAGAAC-G-----------------------GGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TG------GG-TG--CAGTAAATAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGC------CAGATTGTTTGAA---GCAC-----T.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACGCGCATCGCAC-------GGAGTTACTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
droEre2
ACGCGCATCTCAC-------GGAGAAACAT-CT--TTTAGTCGGGT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTAAATAACGATAAGACC-T-----------------------TTCGATGCA--------CACGTGCTCCGGAGTGGGAGTA------------------------------GTGAAT-----TAATATG-------ACCTGC----------------TCCAGTTCG-------------CCCTAG---ACAATCGTTTTGCTTGTCAGT--------------------T-----T-TTTG---AAGCAC-----TGGG-TC-TGGCGGATTGTGCCAAAACAATCGAAATGCGTTTT--------G---------------------CGATGACATCATCGACAT---TGT------G--TT-TTAATCCGCCTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------TTTACATGTGCATGTATTTTAGAACAACTATAGACCGCACTGTGTACGT------CAGATTGTTTGAA---GCAC-----ACA--------CCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGCACTGTGTACGT------CAGATT.................................2312.0020000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCGCACTGTGTACGT------.......................................1811.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGACCGCACTGTGTACGT------CA.....................................2211.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................AATGCGTTTT--------G---------------------CGATGACATCAT....................................................................................................................................................................................2311.0010000010
...........................................................................................................................................ATGCA--------CACGTGCTCCGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAACTATAGACCGCACC.....................................................2011.0010100000
........CTCAC-------GGAGAAACAT-CT--TTTAGTCGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGT------CAGATTGTTTGAA---GCAC-----ACA--------CC.2611.0010000100
...............................CT--TTTAGTCGGGT--GGAAATGCCG---------CT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
ACGCGCATCTCAC-------GGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...............................................................................................................................................A--------CACGTGCTCCGGAGTGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...CGCATCTCAC-------GGAGAAACAT-CT--TTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCATCGACAT---TGT------G--T..............................................................................................................................................................1911.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAGAACAACTATAGACCGC........................................................2311.0010010000
......................AGAAACAT-CT--TTTAGTCGGGT--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......................................................................................................................................................................................................................................................................................................................................................C-----TGGG-TC-TGGCGGATTGTGCCAAAAC..............................................................................................................................................................................................................................................2611.0010000010
...................................................AATGCCG---------CTGGTAATTG------GG-T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
......................................................GCCG---------CTGGTAATTG------GG-TG--CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAACTATAGACCGCACT.....................................................2011.0010100000
........CTCAC-------GGAGAAACAT-CT--TTTAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................ATCGAAATGCGTTTT--------G---------------------CGA.............................................................................................................................................................................................1911.0011000000
droYak3
GCGCGCATCGCACG--------ATCTACTTCTTTTCGTTGTTG-GT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTAAATAAAGATAAGACC-A-----------------------GACGATGCA--------CACGTGCACCGGAGT-GGAGTT------------------------------ATAAAT-----TAATCTG----------------------GCCCTACTCCAGTTCG-------------CCCTGC---ACAGTGGCTTTGCATC------------TTTGCT-TGT-TT------T-TCTG---AAACAA-----TGGG-CC-TGGCGGATTGTGCCAAAACATTCGAACTGCGTTCT--------A---------------------CGATGACATCATCGACAT---TGT------G--TT-TTAAACTGACTAT-----------CCGTTCCATCTGTTTGGTT-----TCTGTGTTTATGTGTTTACATGTGCATGTATTTTAGAACAACTATAGACCGCACAGCGAACGC------CAGATTGTTTGAA---GCAC-----ACA--------CTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCATCTGTTTGGTT-----TCT.........................................................................................................2012.00200200000000
....................................................................................................AGATAAGACC-A-----------------------GACGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000
...................................CGTTGTTG-GT--GGAAATGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
.........................TACTTCTTTTCGTTGTTG-GT--GGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
....................................................................................................................................................................................................................................................................................................................................................ACAA-----TGGG-CC-TGGCGGATTGT......................................................................................................................................................................................................................................................2111.00101000000000
...................................CGTTGTTG-GT--GGAAATGCCG---------CTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCGACAT---TGT------G--TT-TTAAA.......................................................................................................................................................2311.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................GCCAAAACATTCGAACTGCGT.................................................................................................................................................................................................................................2111.00100000010000
..GCGCATCGCACG--------ATCTACTTCTTTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.............G--------ATCTACTTCTTTTCGTTGTTG-GC--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
................................TTTCGTTGTTG-GT--GGAAATGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000
.............................................................................................................................................................................................................................................................................................................................................................................TGTGCCAAAACATTCGAACTGCGTT................................................................................................................................................................................................................................2511.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATAGACCGCACAGCGAA................................................2111.00100000010000
.................................TTCGTTGTTG-GT--GGAAATGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................GTGCCAAAACATTCGAACTGCGT.................................................................................................................................................................................................................................2311.00100000010000
droEug1
ATACGCGTCGCACGG------GAGTTTC-TCTT--TGTTATTGCGT--GGAAATGCCG---------CTGGTAAATGTAAATAGG-TG--TAGTCTATAGAGATAAGCCC-A-----------------------GCGGATGCA--------CACGTGCATAA-GTT-GGAG-----------------------------------AAACGAGGT------GATTAATACCA--------------------------AC-TTGTATGGCCACC--TTTG--C-----------------------CTATTGTTATTAT-ATT-----T-TTTT---TAACAA-----TGGG-CC-TTGTGGATTGTGCCAAAACATTCGAAATGCGTTCT--------C---------------------CGATGACATCATCGACAT---TGT------T--TGCCTAATCTGCTTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------TTTATGTA--CAT-TATTTTAGAAAGACTTTAGGCCACACAACGTACGC------AAGAGTGATTAAA---AC--------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
AGGCGCGTCGCAC-------CGAGTTGA-TTTC--TGATTTTGCGT--GGAAATGCCG---------CTGGTAAATG------GG--G--CTCCAAGTGGAGATAACGCC-T-----------------------TCGGGTGCA--------CACGTGCACAG-----GGAGTT------------------------------GTGGAACAGGCT------GATTAATACCCATCAC----------------ACTGCG-------------CCCCACTTCGC-----------------------CACTT-------------TGAGC-TTGG---GAACAA-----GGGG-CC-CAGTGAAGTGTGCCAAAACATTCGAAATGCGTTCT--------C---------------------CGATGACATCATCGTCACCATTGTGATTGTG--TTTTTAATCCGCCTCT-----------CCGTTCCATCTGTTTGGCT-----TCTGTG--------TTGACGTA------TGTTTCAGGATTACTTTGGACCACACAACGAAGGT------AAACGATTTTGAG---GG--------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
CGGCGCGTCGCACGTCGCACGGAGTTTTATTTT--TGTTATTGCAT--GGAAATGCCG---------CTGGTAAATG------GG-CG--CAGCAAATAGAGATAAG----------------------------------GCA--------CACGTGCAT----GT-GGAGTT------------------------------GTGAAACAAGCT------GATAAATACCTATCAA----------------ACTCCA-------------CCCCGTTTCGC-----------------------CATTTTATT-CGT-GTT-----A-CTTG---AAACAA-----TGGG-CC-TAGTGGATTGTGCCAAAACATTCGAAATGCGTTCT--------A---------------------CGATGACATCATCGACAT---TGT------G--TTTTTAATCCGCTTCA-----------CCGTTCCATCTGTTTGGTT-----TCGGTG--------TTTACGTA------TATTTTAGAAAAACTTTGGACCACACAACGAACGA------AAGAGTGATTGAA---AG--------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
AGTCGCGTCGCAA-------GGAGTTAC-TTTT--TGTTATTGCGT--GGAAATGCCG---------CTGGTAAATG------GG-TG--TAGTAAATAGAGATAAAGCC----------------------------TCTGCA--------CACGTGTTGTG--------------------------------------------AAACGAACT------GATTATTACCTGCCGC----------------ACTTCG-------------CCCTGTTTC----------------CTAGTTTCTCAATT--------T---TTTTGTTTTCG---GAACAA-----TGGG-CC-TGGCGGATTGTGCCAAAACATTCAAAATGCGTTCT--------C---------------------CGATGACATCATCGTCAC---TGT------G--TTTTTAATTCGCTTCA-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------CCCACGTA------CATTTTAGAATTACTTTAAACCACACAACGAACGC------AAGAGATTTTGAA----CGC-----CGA--------CCASizeHit CountTotal NormTotal
No Reads
droRho1
AAGCGCGTCGCAC-------GGAGTTAT-TTTT--TGTTATTGCGT--GGAAATGCCG---------CTGGTAAATG------GG-TG--TAGTAAATAGAGATAAGACC----------------------------GATACA--------CACGTGTTGTG--------------------------------------------AAACGATCT------AATTAGTACCTGCCGT----------------ACTTCG-------------CCCTTTTTT---CTG------------ACTTTCCCATT-------------TTTTGTTTGGA---AAACAA-----TGGG-CC-TGGTGGATAGTGCCAAAACATTTAAAATGCGTTCT--------C---------------------CGATGACATCATCGACAT---TGT------G--TTTTTAATTCGCTTCT-----------CCGTTCCATCTGTTTGGTT-----TCTGTG--------CTTACATA------TATTTTAGAAATACTTTAAACCACTCAACGAAGCC------AAGAAATTTTGAA---AC--------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
ATACGCGTCGTACGG------GAGTAAT-ACTT--TGTTGATGCGT--GGAAATGCCG---------CTGGTAATTG------GG-TG--CAGTTAATGGAGATAAGACC-AGCC-T---------------------TATTTA--------CACGTGCAT-------GGAGTG------------------------------GTGACACAAGCT------GATTAATATCAGCCGC----------------AGTTTG-------------CCCTGTTTCACAATT----------------CCCTTAT----------TTT-----T-ATTA---AAACAA-----TGGG-CC-AGGCGAATTGTGTCAAAACATTTCAAATGCGTTGT--------A---------------------CGATGACATCATCCACAT---TGT------G--TTTTTAATCCCCATCA-----------CCGTTCCATCTGTTTGGTT-----T-TGTG--------TTTACGTA------TATTTTAGAAAAACATAAGAACACACAACGAACGC------AAGAGTGCTTGAA---AC--------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
AGGCGCGTCGGA-----------AT------AT--TGTTATTGCGT--GGAAATGCGG---------CTGGTAAATT------GGTTG--TTAT-AATGCAGATAAGC-C-A-----------------------GTCGATGCA--------CATGTGTTGTGTTGT-GCCGGA------------------------------ATA--------------C----------------------GCCATATCGCCGCTCG-------------CTCCGT---ACAGTGTTTTTAAA---------------------------------A-CTT-------CAATGAATTAGG-CC-TGGCGAATTTGATTAAA---------TTGT-TTCTTTCCTATAA---------------------CGATGACATCATCCACGC---CGT------G--TTTTTAATTCGCCTCT-----------CCGTTCCATCTGTTTTGTT-----TCTGTG--------CTTGCGTA------CATTTTAGAAAAATCTTAGCCCCCACAACGACCGCGACCACAAGTATCTCTGAAAAAGCAA-----ACT-------CTCASizeHit CountTotal NormTotal
No Reads
droAna3
GAGTGCGTCGTGCGC------GAGT------TT--TGTTATT--GT--GGAAATGCCG---------CTGGTAAATA------GG-TG--TTGTAAATAATGATAAGAACTATTGG-------------------GGAGTTGCAGCCACTACCACGT-----------GGAGTG------------------------------GCTACATAACCG------GACTGCTAAC-GCCCCAATCCGGTCCA----------ATGTCGGT----------------------------------------CCATT----------------AT-TTCGGAAAAACAA-----TGGGACCTTAGTGAATAGTGCCAAAAG-------TGGCGT---------------------------------TGATGACATCACCGAGAC---AGT------GTTTT-TTAATTCACCTCT-----------CCGTTCCATCTGTT-ATTT-----TCTGTG--------TTTTCGTA------TATTTTAGAAAAATCTCTGTCTACACAACGAATGC------CAAAGTGTTTGAA---TCAA-----CGC--------ACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GAGTGCGTCGTGCGC------GAGT------TT--TGTTATT--GT--GGAAATGCCG---------CTGGTAAATA--CATAGG-TG--TTGTAAATAATGATAAGAAT-ATTG--------------------GAAGTTGCAGCCACTACCACGT-----------GGAGTG------------------------------GCTACATAACCG------GATTAGTTAC-GCCTCGATCCGGTCCA----------ATTTCG-----------------GC-----------------------CAATT----------------AT-TTCGGAAAAACAA-----TGGGACCTTAGTGAATAGTGCCAAAA----------GCGG-CG--------T---------------------TGATGACATCACCGAGAC---AGT------GTTTT-TTAATTCACCTCT-----------CTGTTCCATCTGTT-GTTT-----TCTGTG--------TTTACGTA------TATTTTAGAAAAATCTTTGTCTACACAACGAATGC------CAAAGTGTTTGAA---TCA-------------------ASizeHit CountTotal NormTotal
No Reads
dp5
GAGCGCAACGGACAA------GAAT------TT--T-GTATTGCGTATTGAAATGCCGCACTCCCTGCTGGTAAATA------G--TGTTTAGTAAATAGAGATAACT---AAGT-TTACCTAAGGCTAAAAGCGAAGAAAACA--------CACGTGCAATAAACG-GGAACAGTGCGCCGCTGATGGAGGGTTTCGGAAGGTGTGGAACATTGGAATATA-------G----------------CCA----------ATGTTGGTTGACTACTACTTTGCGT-----------------------CAATTAACG-TGG-GAT-----A-TTGA---AAACAA-----TGCGGTC-TTGTAATATGTGCCAAAACTTTTGACTTGCGTTCT--------CTGTCGGGTCGGTCGGTAATGCCGATGACATCATCATCAT---TGT------G--TT-T--ATGTGTTTCCC----------TCGTTCCATCTGTTTTGTT--------ATG--------CTTTCGTA------TATTTTAGATAAATCTGTACCCACACAACGAAAGCGAGTGCAAAAGTGTTTAAC---GCAAGATACCCGCTAGACGAGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................CAGTGCGCCGCTGATGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
...................................................................................................................................................................................................TCGGAAGGTGTGGAACATTGG..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CGGGTCGGTCGGTAATGCCGATGA..........................................................................................................................................................................................2411.0011000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCCACACAACGAAAGCGA...........................................2111.0010100000000
.....................GAAT------TT--T-GTATTGCGTATTGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.AGCGCAACGGACAA------GAAT------TT--T-GTATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
..................................................................................................................................................................................................................................................................................................................................AT-----A-TTGA---AAACAA-----TGCGGTC-T................................................................................................................................................................................................................................................................2111.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATCTGTACCCACACAACGAAAGC.............................................2611.0010100000000
..................................................................................................AGAGATAACT---AAGT-TTACCTAAGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................ACTTTTGACTTGCGTTCT--------CT....................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................TGGAGGGTTTCGGAAGGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............A------GAAT------TT--T-GTATTGCGTATTGAAATGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................GACTTGCGTTCT--------CTGTCGGGT.............................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCAAAAGTGTTTAAC---GC.....................2111.0010000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGTGTTTAAC---GCAAGATACCCGC..........2811.0010000001000
........................................................................................................................................................................................GATGGAGGGTTTCGGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................CGGAAGGTGTGGAACATTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................AATAGAGATAACT---AAGT-TTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
...CGCAACGGACAA------GAAT------TT--T-G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000010
.......ACGGACAA------GAAT------TT--T-GTATTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
.AGCGCAACGGACAA------GAAT------TT--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......ACGGACAA------GAAT------TT--T-GTATTGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGTTTTGTT--------ATG--------CTTT..........................................................................................2111.0010010000000
.AGCGCAACGGACAA------GAAT------TT--T-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
..............................................................................................................................................................................GTGCGCCGCTGATGGAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAAAAGTGTTTAAC---GC.....................2011.0010000001000
...........................................................................................................................................................................................................TGTGGAACATTGGAATATA-------G----------------CC..............................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................T------TT--T-GTATTGCGTATTGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000010
............................................................................................................................................................................................................................................................................................................................................................................................GACTTGCGTTCT--------CTGTCGGG..............................................................................................................................................................................................................2011.0010100000000
droPer2
GAGCGCAACGGACAA------GAAT------TT--T-GTATTGCGTATTGAAATGCCGCACTCTATGCTGGTAAATA------G--TGCTTAGTAAATAGAGATAACT---AAGT-TTACCTAAAGCTAAAAGCGAAGAAAAAA--------CACGTGCAATAAACG-GGAGCAGTGCGCCGCTGATGGAGGGTTTCGGAAGGTGTGGAACATTGGAATATA-------G----------------CCA----------ATGTTGGTTGACTACTACTTTGCGT-----------------------CAATTAACG-TGG-GAT-----A-TTGA---AAACAA-----TGCGGTC-TTGTAATATGTGCCAAAACATTTGACTTGCGTTCT--------CTGTCGGGTCGGTCGGTAATGCCGATGACATCATCATCAT---TGT------G--TT-T--ATGTGTTTCCC----------TCGTTCCATCTGTTTTGTT--------ATG--------CTTTCGTA------TATTTTAGATAAATCTGTACCCACACAACGAAAGCGAGTGCAAAAGTGTTTAAC---GCAAGATACCCGCTAGACGAGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................TGATGGAGGGTTTCGGAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
......AACGGACAA------GAAT------TT--T-GT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.....CAACGGACAA------GAAT------TT--T-GTATTGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droWil2
GATGACATCATCCCT------GAGA------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATCAT---TGA------G--TT-TTGTTTCGTCTCTCTCTCCTAAATCCATTTCATCTGTTTTATATTGTTTC-GTG------TTTTTGCTTATACTT-TATTTTAGATAAAATTTAACCCATTCAACGCGCGC------GA-------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droMoj3
TGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTT---GAAA-----ACG--------GCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/18/2015 at 10:51 PM