ID:

dsi_22257

 Coordinate:

2r:14012391-14012665 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.6 -20.5 -20.5

Flybase annnotation

three_prime_UTR [2r_14012666_14014238_+]; exon [2r_14012666_14014238_+]; three_prime_UTR [2r_14012071_14012390_+]; exon [2r_14012071_14012390_+]; intron [2r_14012391_14012665_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACAACACCACCACCACAACCGCTTCAGTGCCCAATATGCTCTTAGTAAGGTATTGAAATGCGATATTAACGAACGCAGAAGAGAACTCCTTCGTCCTTGCACACAACCCACACTAAATCGATGTCTTTGGACAATGCAAATGAATACACGGGCTTTATGTGTATCCGCTTGCTTGCTTCTTACATACATATACCTCTCCGCTTATCCGTCAAAGTTCCCGTATTGATTTGCATTGATCCGGAAACGCATAAAACTCATTCGATTATACACCGCAAACCAAAGACAAGAACATCTCTCTAAATCCAAATTAACATTCTCTTACAGACCTGCTAATCCTTCGCTACATATTGGCACATTTCCGTTCTTGCCCGTGC
*******************************************************....((((...........))))((((.......))))............................((((....((.(((.((((.((.(((((((.......))))))).)).)))))))))....)))).............................**************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...................................................................................................................AAATCAATGTCTTCGGAC.................................................................................................................................................................................................................................................. 18 2 7 2.14 15 4 10 1 0 0 0 0 0
.....................................................................................................................................................................................................TCCGCTTATCCGTCAAAG................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................GAAATGCGATATTAACGAACGC.......................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
..................................................GTATCGAAATGCGATA..................................................................................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 1 0 0 0 0
...................................................................................................................AAATCAATGTCTTTGGACT................................................................................................................................................................................................................................................. 19 2 6 0.17 1 1 0 0 0 0 0 0 0
...............................................AACGTAGCGAAATGCGATA..................................................................................................................................................................................................................................................................................................................... 19 3 20 0.15 3 0 0 0 2 0 0 1 0
..................................................................................................................................................................................................................................ATTAGCTTTGATCCGGA.................................................................................................................................... 17 2 14 0.14 2 0 0 0 0 2 0 0 0
.......................................................................................................................................................................................................................................CTTTGATCCTGAAACGCATG............................................................................................................................ 20 3 10 0.10 1 1 0 0 0 0 0 0 0
.................................................................................................GTGCACACAACCAACACT.................................................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................AAAGGCAAGAACATC................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTGTTGTGGTGGTGGTGTTGGCGAAGTCACGGGTTATACGAGAATCATTCCATAACTTTACGCTATAATTGCTTGCGTCTTCTCTTGAGGAAGCAGGAACGTGTGTTGGGTGTGATTTAGCTACAGAAACCTGTTACGTTTACTTATGTGCCCGAAATACACATAGGCGAACGAACGAAGAATGTATGTATATGGAGAGGCGAATAGGCAGTTTCAAGGGCATAACTAAACGTAACTAGGCCTTTGCGTATTTTGAGTAAGCTAATATGTGGCGTTTGGTTTCTGTTCTTGTAGAGAGATTTAGGTTTAATTGTAAGAGAATGTCTGGACGATTAGGAAGCGATGTATAACCGTGTAAAGGCAAGAACGGGCACG
****************************************************************************************************************************************************************....((((...........))))((((.......))))............................((((....((.(((.((((.((.(((((((.......))))))).)).)))))))))....)))).............................******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................TGAGGAACCAGGAACGTGTGGTGTG......................................................................................................................................................................................................................................................................... 25 3 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................GTGGCGAGTAGGCAGTTTAAA.............................................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0
.......................................................................CTTGCGTCTTCTCAT................................................................................................................................................................................................................................................................................................. 15 1 10 0.10 1 0 0 1 0 0
.................................................................................................................................................................................AAAAATGTGTGTATCTGGAG.................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 1 0
............................................................................................................................................................................................................................................................................GTGGCGCTTGCTTTCTGTT........................................................................................ 19 2 11 0.09 1 1 0 0 0 0
...............................................................................................................................................................................................AAGGAGAGCCGAATAG........................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 1
................................GGTATACGAGAATCA........................................................................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................CTTTAGGTTTAATTG.............................................................. 15 1 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14012341-14012715 + dsi_22257 AACAA------------CA--------------------------CCACC---ACCACAACCGCT---TCAGTGCCCAATATGCTCTTAGTAAGGTATTGAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACACT-AAATCGAT----GTC-----------TTT--GGA---CAATGCAAATGAATACACGGGCTTTATGTGTATCCG-----------------------------------------------------------------------------CTTGCTTGCTTCTT-----------A---------------------CATACAT------ATAC-CTCTCCGC---TTATC--CGTCAAA---------GTT--C---CCGT-AT----------------TGATTTGCATTGATCCGGA------------------AA--C-------------------------------------------------GCAT-----------AAAACTCATTCGAT------TATAC-----ACC-------GCAAACCAAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGC
droSec2 scaffold_1:10857229-10857600 + AACAA------------C-----------------------------ACC---ACCACAACCGCT---TCAGTGCCCAATATGCTCTTAGTAAGGTATTAAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACACT-AAATCGAT----GTC-----------TTT--GGA---CAATGCAAATGAATACACGGGCTTTATGTGAATCCG-----------------------------------------------------------------------------CTTGCTTGCTTCTT-----------A---------------------CATACAT------ATAC-CTCTCCGC---TTATC--CGTCAAA---------GTT--C---CCGT-AT----------------TGATTTGCATTGATCCGGA------------------AA--C-------------------------------------------------GCAT-----------AAAACTCATTCGAT------TATAC-----ACC-------GCAAACCAAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGC
dm3 chr2R:13360268-13360641 + AACAA------------C-----------------------------ACC---ACCACAACCGCT---TCAGTGCCCAATATGCTCTTAGTAAGGTATTGAAA-------------------TGCGATATTATC-GAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACACT-AAATCGAT----GTC-----------TTT--GGA---CAATGCAAATGAATACACGGGCTTTATGTGAATCCG-----------------------------------------------------------------------------CTTGCTTGCTTCTA-----------A---------------------CATACAT------ATAC-CTCTCCGC---TTATC--CGTCAAA---------GTT--C---CCGT-AT----------------TGATTTGCATTGATCCGAA------------------AA--C-------------------------------------------------GCAAA----A-----AAAACCCTTTCGAT------TATAC-----ACC-------GCAAATCAAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGC
droEre2 scaffold_4845:12494309-12494680 - AACAA------------C-----------------------------ACC---ACCACAACCGCT---TCAGTGCCCAATATGCTCTTAGTAAGGTATTGAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----AACTCCTTCG----TCCTTGCACAC----------------ACT--A---------------AATCCACACT-AAATCGAT----GTC-----------TTT--GGG---CAATGCAAATGAATACTCGGGCCTTATGTTAATCCG-----------------------------------------------------------------------------CTTGATTGCTGCTT-----------A---------------------C----AA------ATAC-CTCTCCGC---TTATC--AGTCGAA---------GTT--C---CAGT-AT----------------TGATTTGCATTGATCCAAA------------------AA--C-------------------------------------------------GCGA-----------AAAACCCTCTCGAT------CATAC-----ACC-------GCAAGCCAAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTACCATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTACTTGCCCGTGC
droYak3 2R:18104203-18104574 - AACAA------------C-----------------------------ACC---ACCACAACCGCT---TCAGTGCCCAATATGCTCTTAGTAAGGTATTGAAA-------------------TGCGATATTAAC-AAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----ATCTCCTTTG----TCCTTGCACAC----------------AAC---------------------CCACACT-AAATCGAT----GTC-----------TTT--GGG---CAATGCAAATGAATACTCGGGCTTTAAGTGAATCCG-----------------------------------------------------------------------------CTTGCTTGCTTCTT-----------A---------------------CATAC--------ATCC-CTCTCCGC---TCATC--ACTCAAA---------GTT--C---ATGT-AT----------------TGATTTGCATTGATCCAGA------------------AA--C-------------------------------------------------GCAAC----A-----AAAACCCTCTCGAT------CATAC-----ACC-------GCAAACCAAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGC
droEug1 scf7180000409672:1748292-1748662 - AATAA------------CA--------------------------ACAAC---ACCACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGA-A-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------CGTGA---------------------AAGAT----AAATCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACAAC-AAATTT-T----TTC-----------TCT--GGA---CAATGCAAATTAATATCCGGCATTAATGTGAATCCG-----------------------------------------------------------------------------ACAGCTTGCTTTTT-----------A---------------------C----CT------ATAC-CTTTCCGC---TTATC--ATTTAAA---------GCT--T---CCAT-AT----------------TGATTTGCATTGATCCAGA------------------AA--C-------------------------------------------------CCCAA----A-----GATACCCTCAAGAT------CATAC-----ACC-------GCAAACCAAAGA--------------CAAGAACG---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGC
droBia1 scf7180000301754:5612410-5612781 + AACAC------------CA--------------------------CCACC---ACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATATTA-C-AAA-------------------------------------------------------------------------CGTGAA--------------------GAGAG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACACC-GAACCGAT----GTC-----------TCT--GGG---CAGTGCAAATGAATACTCGGG----------AACCG-----------------------------------------------------------------------------CCTGCTTGCTTTTT-----------T---------------------C----CT------ATAG-CCCTCCGC-GCTT--G--ATCTAAG---------GCT--CCGCCCGT-AT----------------TGACTTGCACTGATCCAGG------------------AA-TCCAGACAC------------------------------------------CCCG-----------AGAACCCCCTCGAT------CACAC-----ACC-------GCAAACAAACGC--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTTCACATTGGCA---CATTTCCGTTCTTGCCCGTGC
droTak1 scf7180000415138:383803-384138 - AACAA------------CA--------------------------ACAAC---ACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATA--------------------------------------------------------------------------------------------------------------GAG----AACTCCTTCG----TCCTTGCACAC----------------AACCTACAACCTACAACCCACAATCCACACC-AAATCGAT----GTC-----------TTT--GGA---CAATGCAAATGAATACTCGGTCTTT-----------------------------------------------------------------------------------------TCGCTTGCTTTTT-----------G---------------------C----CT------ATAC-CTCTCCGC---TTTTTTGATCCAAA---------GCT--C---CCGT-AT----------------TGATTTGCATTGATCCAGA------------------AA--C-------------------------------------------------C------------------------------------------------------------CCAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTTCATATTGGCA---CATTTCCGTTCTTGCCCGTGC
droEle1 scf7180000491214:932582-932958 - AACAA------------CA--------------------------CCACC---ACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAT-------------------TGCGATATTAAT-GAA-------------------------------------------------------------------------TGTGAA--------------------ATGAG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACACC-TAATCGATG--TCTC-----------TTT--GGT---CAATGCAAATGAATACTCGGTCTTTTTGTGATGTCG-----------------------------------------------------------------------------CTTGCTTGCTTTTT-----------AATCATTAGTATA------TAGT----AT------ATAC-CTCTCCGC---TTATC--ATCCAAA---------GCT--T---TTGT-AT----------------TGATTTGCATTGATCCAGA------------------TAAAC-------------------------------------------------CCAT-----------A----------------------AC-----ACT-------GCAAACCAACGA--------------CAAGAACA-TCTCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGC
droRho1 scf7180000776786:70515-70893 + AACAA------------CA--------------------------CCACC---ACCACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------AGTGAA--------------------ATGTG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CTACACC-AAACCGATA--TCTC-----------TTT--GGT---CAATGCAAATGAATACACGGTCTTATTGTGATGCCG-----------------------------------------------------------------------------CTTGCTTGCTTTTA-----------AATCACT-------------A------GT------ATAC-CCCTCCGC---TTATC--ATCCAAA---------ACT--T---CCGT-AT----------------TGATTTGCATTGATCCAGA------------------AA--C-------------------------------------------------CCC------------AAAACCCTCTCGAT------CACAC-----ACT-------GCAAACCAACGA--------------CAAAAACA---TCTCTCTAAAT-CC---A--AATTAACATTTTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGC
droFic1 scf7180000453948:2091594-2091972 - AACAC------------CA--------------------------CCACCACCACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------AGTGAA--------------------AAGAG----AACTCCTTCG----TCCTTGCACAC----------------ACC---------------------CCACACC-AAATCGAA----GTC-----------TTT--GGA---CAATGCAAATGAATTATCGGGTTTATGGTGATGCCG-----------------------------------------------------------------------------CTTGCTTGCTTTTT-----------A---------------------A----CT------TTAC-CTCTCCGC---TTATC--AACCAAAA--------ACT--C---CCGT-AT----------------TAGTTTGCATTGATCCAGA------------------TA--C-------------------------------------------------CCC-------------AAACCCTATCGAT------CATACATCAAACC-------GCAAACCGAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTTTTGCCTGTGC
droKik1 scf7180000302385:879145-879570 - AACAA------------CACAACAA---------CAA--------CAACC---ACCACAACCGCT---ACAGTGCCCAATATGCTATTAGTAAGGTATTAAAA-------------------TCAG--------------------------------------------------------------C--------------------------------ATGCAACTCC-------ACCC----AACTCCTTGG----TCCTTGCACAGACACACAAAATCCACAAAC---------------------CCACAAC-AATTCG-T----GTC-----------TTT--AGTAATCTTTGCAAATCGATAATCGAGAGATATTTG------------------------------GAATTTTGCAAAAAATAACTTCGGTAAATCGAATATAGAAAAATATCTCCCAACTCGCTTGCTTTTT-----------AATCA----------------------AT------ATCCAATCTCCGC---TTATT--AC--------------GCTCTC---CATT-AT----------------TGATTTGCATTGGCCCAGA------------------AA--A-------------------------------------------------TCCAG----T-----G---------------------T-C-----ACC------------CCAAAGA--------------CAACA--A---TCTCTCTAAAAACG---A--AATTAACATTCTCTTACAGACCTGCTAACAATCCTTCTTCGCTACACATTGGCA---CATTTCCGTTCTTGCCAGTGC
droAna3 scaffold_13266:8842936-8843333 + AACAAC-----------CA---------------------CCACACCACC---ACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATCAAAAT-CAA-------------------------------------------------------------------------AGTAAAAA-CAAGTAA--------------C----TAGTCCTTCG----TCCTTGCGCAC----------------A-C---------------------CCACAAG-CAATCGAA----TTC-----------TTT--GAT---CAATGCAAGTTAAA-----------TAGCAATGTCG-----------------------------------------------------------------------------CTTGCTTGCTTGTTGTTTTTTTTTTAATCAAT------------------------------TCAAAATACGC---TTATC--AATCAGAAAAACAATTGCT-TC---C-----------------------AATTTGCATTGATCTGAA------------------AG-------------------------------------------------------------------------TTTTCGATGACC--TATCC-----ACCACCTAATGCCAACAA-T--TTGAA-AACGA---CAAGAACC---ACTCTCTAAAT-TC---C--AATTAACATTCTCTTACAGACCTGCTAA---TCCATCTTCGCTTCATATTGGCA---CATTTCCGTTCTTGCCAGTGC
droBip1 scf7180000395648:16620-17011 - AACAA------------CA--ACAA---------CAACAACCACACCACCACAACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATCAAAACTAAA-------------------------------------------------------------------------AGTAAAAATC-----------------AAGT----AACTCCTTCG----TCCTTGCGCAC----------------A-C---------------------CCACAAGCCCATCGAA----TTC-----------TTT--GAT---CAATGCAAGTT------------ATAAGCAATGCCA-----------------------------------------------------------------------------CCTGCTTGCTTTTA-----------A-----------------------------------------ATCCGC---TTATC--AATCAAA---ATAATTGC---------TT-TC----------------TAATTTGCATTGATCTGAA------------------AG-------------------------------------------------------------------------TTTTCGATGACCCATATCC-----AC-ACCTAATGTAAACCAATGA----AAAACGACATTAAGAACTCTCTATCTCTAAAT-TC---C--AATTAACATTCTCTTACAGACCTGCTAA---TCCTTCTTCGCTTCATATTGGCA---CATTTCCGTTCTTGCCAGTGC
dp5 3:4813951-4814334 + AACAG------------AA--------------------------ACACC---GCTACAAGCGCT---ACAGTGCCAGATATGCTATTAGTAAGGTATTGAAA-------------------AGAAATTTTAAA-GAACAGA------------------------------------ACAACATCACC--------------------------------AAGCAAC--CATTCAAAAGAGAACGAACTCCTTCA----TCCTTGCACAC----------------AA----------------------------T-AAACCGA-------------------------GT---CAATGCAAATAGATGCG-----TCAATGTGA-TGCGATTTTAGCTTTCTTAGATTATTTGTAATGTT--------TAA-TTCG--------T------AATGA--------------------------------------------TATATCCTGTTAGA----AT------ATGC-CT--------------------AAA---------GCT--A---TCATCATTGGTAAATCCAATCATCTATTTGCATTGATCG------------------------------------------------------------------------------------------------------------------------------------------ACAA--------------CAAGAACA---TCTCTCTAAAT-AC---A---ATTAACATTCTCTTACAGACCTGCTTA---TCCTTCTTCGCTACATATTGGTA---CATTTCCGTTCTTGCCAGTGC
droPer2 scaffold_2:5007964-5008347 + AACAG------------AA--------------------------ACACC---GCTACAAGCGCT---ACAGTGCCAGATATGCTATTAGTAAGGTATTGAAA-------------------AGAAACTTTAAA-GAGCAGA------------------------------------ACAACATCACC--------------------------------AAGCAAC--CATTCAAAAGAGAACGAACTCCTTCA----TCCTTGCACAC----------------AA----------------------------T-AAACCGA-------------------------GT---CAATGCAAATAGATGCG-----TCAATGTGA-TGCGATTTTAGCTTTCTTAGATTATTTGCAATGTT--------TAA-TTCG--------T------AATGA--------------------------------------------TATATCCTGCTAGA----AT------ATGC-CT--------------------AAA---------GCT--A---TGATCATTGGTAAATCCAATCATCTATTTGCATTGATCG------------------------------------------------------------------------------------------------------------------------------------------ACAA--------------CAAGAACA---TCTCTCTAAAT-AC---A---ATTAACATTCTCTTACAGACCTGCTTA---TCCTTCTTCGCTACATATTGGTA---CATTTCCGTTCTTGCCAGTGC
droWil2 scf2_1100000004954:4518692-4518862 - TATATA-----------C-----------------------------A-------TATATACGTT---TAAGTACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATCCCCA------------------CA-TCCACATAT------------------------------------------ACAA-----------CAAGTATTTCCGGT------CACAC-----T-C-------GCACACTAATT----------GA---C----ATA---TTTCTT------CT---AA-ACATAACATTCTTTTACAGACCTGCTAA---TCC---TTCGCTTCATATTGGTACTACATTTCCGTACTTGCCAGTGC
droVir3 scaffold_12875:12815598-12816065 - AACCA------------GA--------------------------ACAAC---ACAACAACTGTT---ACTGCGCCCAGTATGCTATTAGTAAGGTATTGAAA-------------------AGCAATTAA----GAGCATAATTAATCAAATGGATATTACAACAACAA-----------------------------TCCCTTGTCCAGACCAG---------------------TTCAG----AACTCCTTCACCTTTCCTTGCACAT----------------------------------------CCAAAC------GCTT----GTCCACGGCTGA--TATGCTAC---AAATGTAAATACATAGATAGATTTC--GTGA---TG-----------------------------------------------------------------------------GCTGCTTGCTTCAA-----------TAT---ACCGATA------TAC--TATATCTATCTATAC-ATATCTAGCGCATATT--C--TATT---------TAT--ATAC---------------AT--------ATTTGG---------------AATATTTATCCTCAAG-TTAAAACTCATCATGATAATCTATTTATTTACATTCGCCAA--------AAGCCGTCGACTAGAGA--------------------CACTC-----A----------CATAC-A-------------------ATTGAAA---TTACTCTAAAT-ACTCTT--AACTTGCATTCTCTTACAGCCCTACTTA---TCC---TACGCTTCATTTTCGCG---AGATTCCGTTCTTGCCAGTGC
droMoj3 scaffold_6496:20076701-20077177 - AACATGCAACATACCCAAA--------------------------ACAAC---ACAACAACTTTA---ACTGCGTCCAGTATGCTATTAGTAAGGTATTAAACAAAACAAAATAAAACAAAAAGCAGTTCA----GAGCACAATTAATCAAATGGATATTACAAC---CA-----------------------------TCCCTTGTTCAGTCCAG---------------------TACAG----TATTCCTTCATTATTCCTTGCACAG------------------C---------------------CAAAGC------GCAT----GTC-ACAGCAACTATTT--G-----AGATGTAAATACGTAGACAGAGTTCATAATAA--TG-----------------------------------------------------------------------------CCTGCTTG----TT-----------G--------------------AA----AT------ATAC-ATATCCAATGCATATG--AATGATC---A-----TAT--ATAC---------------TTAATTAT------------------ATATCAATATTTA----------------TTATCATGATAAACTATTTGTTTGCATTCACAAATAG-----GCGCTGCTGACTTAATA-----------CA----C--AATCC-----A-C-------GAACAC-A-------------------ATTGACA---TTTCTCTAAAT-ACTCTTAATACTTGCATTCTCTTACAGCCCTTCCAT---TCC---TTCGCTTCATATTCGTG---AGATTCCGTTCTTGCCAGTGC
droGri2 scaffold_15245:7554179-7554665 + AACAA------------CACAACAACTAGAACAACAA--------CAACA---ACAGCAAATGCTACAACTGCGCCCAGTATGCTATTAGTAAGGTATTAAAA------------------ATGCAATCAA-AA-GAGCACACTATATCAAAATGACACTGCAACAACAACAAAAAAAACAACAACAACAACAACAATTTCACTTGTAAAGTCCAG---------------------TTCCG----CACTCCTCCTTTGTTCCTTGCACAA------------------T---------------------CCAATCC-AAATCCAATTTTGTC-ACGGCTTCTATAT--GG----AAATGTTAATACATAGACAAATTAC--ATGA---TA-----------------------------------------------------------------------------TCTGCTTCAATATA-----------TACCATT-------------A-TATATAT------ATAT-ATATACAC---ATATT--C-----------------------------AAACGTACATTTAATCAT------------------A------------------AA-TTTGAAAACATCATGGACAACTATTTATTTGCATTTACAAA-AGATGAAAAGCCGTCGACTT--------------------------T------------------CAGAC--------------------CAGACACA---TTTCTCTAAAT-AC---A--ACTT-GCATT-TCTTACAGCC------------C---TTCGCTTCATATTCGTG---AGATTCCGTTCTTGCCAGTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACAA------------CA--------------------------CCACC---ACCACAACCGCT---TCAGTGCCCAATATGCTCTTAGTAAGGTATTGAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACACT-AAATCGAT----GTC-----------TTT--GGA---CAATGCAAATGAATACACGGGCTTTATGTGTATCCG-----------------------------------------------------------------------------CTTGCTTGCTTCTT-----------A---------------------CATACAT------ATAC-CTCTCCGC---TTATC--CGTCAAA---------GTT--C---CCGT-AT----------------TGATTTGCATTGATCCGGA------------------AA--C-------------------------------------------------GCAT-----------AAAACTCATTCGAT------TATAC-----ACC-------GCAAACCAAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGC---TTATC--CGTCAAA---------G........................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
...................................................................................................GAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------CGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
droSec2
AACAA------------C-----------------------------ACC---ACCACAACCGCT---TCAGTGCCCAATATGCTCTTAGTAAGGTATTAAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACACT-AAATCGAT----GTC-----------TTT--GGA---CAATGCAAATGAATACACGGGCTTTATGTGAATCCG-----------------------------------------------------------------------------CTTGCTTGCTTCTT-----------A---------------------CATACAT------ATAC-CTCTCCGC---TTATC--CGTCAAA---------GTT--C---CCGT-AT----------------TGATTTGCATTGATCCGGA------------------AA--C-------------------------------------------------GCAT-----------AAAACTCATTCGAT------TATAC-----ACC-------GCAAACCAAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................TTCG----TCCTTGCACAC----------------AAC---------------------CCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
AACAA------------C-----------------------------ACC---ACCACAACCGCT---TCAGTGCCCAATATGCTCTTAGTAAGGTATTGAAA-------------------TGCGATATTATC-GAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACACT-AAATCGAT----GTC-----------TTT--GGA---CAATGCAAATGAATACACGGGCTTTATGTGAATCCG-----------------------------------------------------------------------------CTTGCTTGCTTCTA-----------A---------------------CATACAT------ATAC-CTCTCCGC---TTATC--CGTCAAA---------GTT--C---CCGT-AT----------------TGATTTGCATTGATCCGAA------------------AA--C-------------------------------------------------GCAAA----A-----AAAACCCTTTCGAT------TATAC-----ACC-------GCAAATCAAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..CAA------------C-----------------------------ACC---ACCACAACCGCT---TCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCA---CATTTCCGTTCTTG.......2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTGGCA---CATTTCCGTTCTTGC......2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTACATATTGGCA---CATTTCCGT............2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................CT---TCAGTGCCCAATATGCTCTTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGTAAGGTATTGAAA-------------------TG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTGGCA---CATTTCCGTT...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TCAGTGCCCAATATGCTCTTAGTAAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....A------------C-----------------------------ACC---ACCACAACCGCT---TCAGTGCCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................T---TCAGTGCCCAATATGCTCTTAGTAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................GAATACACGGGCTTTATGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---TTCGCTACATATTGGCA---CATTTCCG.............2711.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGTAAGGTATTGAAA-------------------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCTAA---TCC---TTCGCTACATAT.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCA---CATTTCCGTTCTTGCCCG...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................CAG---------------------AAGAG----AACTCCTTCG----TCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTCGCTACATATTGGCA---CATTTCCGT............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACATATTGGCA---CATTTCCGTTCTT........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................AAGAG----AACTCCTTCG----TCCTTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--C---CCGT-AT----------------TGATTTGCATTGAT...........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTGGCA---CATTTCCGTTCT.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTGGCA---CATTTCCGTTCTT........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................CGAT----GTC-----------TTT--GGA---CAATGCAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTACATATTGGCA---CATTTCCGTT...........2611.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC---TTCGCTACATATTGGCA---CATT.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GCCCAATATGCTCTTAGTAAGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TCAGTGCCCAATATGCTCTTAGTAAGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATCCGAA------------------AA--C-------------------------------------------------GCAAA----A-----AA.............................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGGCA---CATTTCCGTTCTTGCCCG...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---CATTTCCGTTCTTGCC.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAAAT-CC---A--AATTAACATTCTCT................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.................................................C---ACCACAACCGCT---TCAGTGCCCAATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAGACCTGCTAA---TCC---TTC......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................T-AAATCGAT----GTC-----------TTT--GGA---CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---A--AATTAACATTCTCTTA..............................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTACATATTGGCA---CATTTCCGTTCT.........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAGTGCCCAATATGCTCTTAGTAAGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...AA------------C-----------------------------ACC---ACCACAACCGCT---TC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC---TTCGCTACATATTGGCA---CATTTCCG.............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................AA-------------------------------------------------------------------------CGCAG---------------------AAGAG----AACTCCTTCG----TCCTTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TATTATC-GAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----AACTCCTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTA-----------A---------------------CATACAT------ATAC-CT.........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACAA------------C-----------------------------ACC---ACCACAACCGCT---TCAGTGCCCAATATGCTCTTAGTAAGGTATTGAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----AACTCCTTCG----TCCTTGCACAC----------------ACT--A---------------AATCCACACT-AAATCGAT----GTC-----------TTT--GGG---CAATGCAAATGAATACTCGGGCCTTATGTTAATCCG-----------------------------------------------------------------------------CTTGATTGCTGCTT-----------A---------------------C----AA------ATAC-CTCTCCGC---TTATC--AGTCGAA---------GTT--C---CAGT-AT----------------TGATTTGCATTGATCCAAA------------------AA--C-------------------------------------------------GCGA-----------AAAACCCTCTCGAT------CATAC-----ACC-------GCAAGCCAAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTACCATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTACTTGCCCGTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
AACAA------------C-----------------------------ACC---ACCACAACCGCT---TCAGTGCCCAATATGCTCTTAGTAAGGTATTGAAA-------------------TGCGATATTAAC-AAA-------------------------------------------------------------------------CGCAG---------------------AAGAG----ATCTCCTTTG----TCCTTGCACAC----------------AAC---------------------CCACACT-AAATCGAT----GTC-----------TTT--GGG---CAATGCAAATGAATACTCGGGCTTTAAGTGAATCCG-----------------------------------------------------------------------------CTTGCTTGCTTCTT-----------A---------------------CATAC--------ATCC-CTCTCCGC---TCATC--ACTCAAA---------GTT--C---ATGT-AT----------------TGATTTGCATTGATCCAGA------------------AA--C-------------------------------------------------GCAAC----A-----AAAACCCTCTCGAT------CATAC-----ACC-------GCAAACCAAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AATAA------------CA--------------------------ACAAC---ACCACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGA-A-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------CGTGA---------------------AAGAT----AAATCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACAAC-AAATTT-T----TTC-----------TCT--GGA---CAATGCAAATTAATATCCGGCATTAATGTGAATCCG-----------------------------------------------------------------------------ACAGCTTGCTTTTT-----------A---------------------C----CT------ATAC-CTTTCCGC---TTATC--ATTTAAA---------GCT--T---CCAT-AT----------------TGATTTGCATTGATCCAGA------------------AA--C-------------------------------------------------CCCAA----A-----GATACCCTCAAGAT------CATAC-----ACC-------GCAAACCAAAGA--------------CAAGAACG---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGCSizeHit CountTotal NormTotal
No Reads
droBia1
AACAC------------CA--------------------------CCACC---ACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATATTA-C-AAA-------------------------------------------------------------------------CGTGAA--------------------GAGAG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACACC-GAACCGAT----GTC-----------TCT--GGG---CAGTGCAAATGAATACTCGGG----------AACCG-----------------------------------------------------------------------------CCTGCTTGCTTTTT-----------T---------------------C----CT------ATAG-CCCTCCGC-GCTT--G--ATCTAAG---------GCT--CCGCCCGT-AT----------------TGACTTGCACTGATCCAGG------------------AA-TCCAGACAC------------------------------------------CCCG-----------AGAACCCCCTCGAT------CACAC-----ACC-------GCAAACAAACGC--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTTCACATTGGCA---CATTTCCGTTCTTGCCCGTGCSizeHit CountTotal NormTotal
No Reads
droTak1
AACAA------------CA--------------------------ACAAC---ACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATA--------------------------------------------------------------------------------------------------------------GAG----AACTCCTTCG----TCCTTGCACAC----------------AACCTACAACCTACAACCCACAATCCACACC-AAATCGAT----GTC-----------TTT--GGA---CAATGCAAATGAATACTCGGTCTTT-----------------------------------------------------------------------------------------TCGCTTGCTTTTT-----------G---------------------C----CT------ATAC-CTCTCCGC---TTTTTTGATCCAAA---------GCT--C---CCGT-AT----------------TGATTTGCATTGATCCAGA------------------AA--C-------------------------------------------------C------------------------------------------------------------CCAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTTCATATTGGCA---CATTTCCGTTCTTGCCCGTGCSizeHit CountTotal NormTotal
No Reads
droEle1
AACAA------------CA--------------------------CCACC---ACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAT-------------------TGCGATATTAAT-GAA-------------------------------------------------------------------------TGTGAA--------------------ATGAG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CCACACC-TAATCGATG--TCTC-----------TTT--GGT---CAATGCAAATGAATACTCGGTCTTTTTGTGATGTCG-----------------------------------------------------------------------------CTTGCTTGCTTTTT-----------AATCATTAGTATA------TAGT----AT------ATAC-CTCTCCGC---TTATC--ATCCAAA---------GCT--T---TTGT-AT----------------TGATTTGCATTGATCCAGA------------------TAAAC-------------------------------------------------CCAT-----------A----------------------AC-----ACT-------GCAAACCAACGA--------------CAAGAACA-TCTCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGCSizeHit CountTotal NormTotal
No Reads
droRho1
AACAA------------CA--------------------------CCACC---ACCACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------AGTGAA--------------------ATGTG----AACTCCTTCG----TCCTTGCACAC----------------AAC---------------------CTACACC-AAACCGATA--TCTC-----------TTT--GGT---CAATGCAAATGAATACACGGTCTTATTGTGATGCCG-----------------------------------------------------------------------------CTTGCTTGCTTTTA-----------AATCACT-------------A------GT------ATAC-CCCTCCGC---TTATC--ATCCAAA---------ACT--T---CCGT-AT----------------TGATTTGCATTGATCCAGA------------------AA--C-------------------------------------------------CCC------------AAAACCCTCTCGAT------CACAC-----ACT-------GCAAACCAACGA--------------CAAAAACA---TCTCTCTAAAT-CC---A--AATTAACATTTTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTCTTGCCCGTGCSizeHit CountTotal NormTotal
No Reads
droFic1
AACAC------------CA--------------------------CCACCACCACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATATTAAC-GAA-------------------------------------------------------------------------AGTGAA--------------------AAGAG----AACTCCTTCG----TCCTTGCACAC----------------ACC---------------------CCACACC-AAATCGAA----GTC-----------TTT--GGA---CAATGCAAATGAATTATCGGGTTTATGGTGATGCCG-----------------------------------------------------------------------------CTTGCTTGCTTTTT-----------A---------------------A----CT------TTAC-CTCTCCGC---TTATC--AACCAAAA--------ACT--C---CCGT-AT----------------TAGTTTGCATTGATCCAGA------------------TA--C-------------------------------------------------CCC-------------AAACCCTATCGAT------CATACATCAAACC-------GCAAACCGAAGA--------------CAAGAACA---TCTCTCTAAAT-CC---A--AATTAACATTCTCTTACAGACCTGCTAA---TCC---TTCGCTACATATTGGCA---CATTTCCGTTTTTGCCTGTGCSizeHit CountTotal NormTotal
No Reads
droKik1
AACAA------------CACAACAA---------CAA--------CAACC---ACCACAACCGCT---ACAGTGCCCAATATGCTATTAGTAAGGTATTAAAA-------------------TCAG--------------------------------------------------------------C--------------------------------ATGCAACTCC-------ACCC----AACTCCTTGG----TCCTTGCACAGACACACAAAATCCACAAAC---------------------CCACAAC-AATTCG-T----GTC-----------TTT--AGTAATCTTTGCAAATCGATAATCGAGAGATATTTG------------------------------GAATTTTGCAAAAAATAACTTCGGTAAATCGAATATAGAAAAATATCTCCCAACTCGCTTGCTTTTT-----------AATCA----------------------AT------ATCCAATCTCCGC---TTATT--AC--------------GCTCTC---CATT-AT----------------TGATTTGCATTGGCCCAGA------------------AA--A-------------------------------------------------TCCAG----T-----G---------------------T-C-----ACC------------CCAAAGA--------------CAACA--A---TCTCTCTAAAAACG---A--AATTAACATTCTCTTACAGACCTGCTAACAATCCTTCTTCGCTACACATTGGCA---CATTTCCGTTCTTGCCAGTGCSizeHit CountTotal NormTotal
No Reads
droAna3
AACAAC-----------CA---------------------CCACACCACC---ACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATCAAAAT-CAA-------------------------------------------------------------------------AGTAAAAA-CAAGTAA--------------C----TAGTCCTTCG----TCCTTGCGCAC----------------A-C---------------------CCACAAG-CAATCGAA----TTC-----------TTT--GAT---CAATGCAAGTTAAA-----------TAGCAATGTCG-----------------------------------------------------------------------------CTTGCTTGCTTGTTGTTTTTTTTTTAATCAAT------------------------------TCAAAATACGC---TTATC--AATCAGAAAAACAATTGCT-TC---C-----------------------AATTTGCATTGATCTGAA------------------AG-------------------------------------------------------------------------TTTTCGATGACC--TATCC-----ACCACCTAATGCCAACAA-T--TTGAA-AACGA---CAAGAACC---ACTCTCTAAAT-TC---C--AATTAACATTCTCTTACAGACCTGCTAA---TCCATCTTCGCTTCATATTGGCA---CATTTCCGTTCTTGCCAGTGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................ACACCACC---ACAACAACCGCT---TCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droBip1
AACAA------------CA--ACAA---------CAACAACCACACCACCACAACAACAACCGCT---TCAGTGCCCAATATGCTATTAGTAAGGTATTGAAA-------------------TGCGATCAAAACTAAA-------------------------------------------------------------------------AGTAAAAATC-----------------AAGT----AACTCCTTCG----TCCTTGCGCAC----------------A-C---------------------CCACAAGCCCATCGAA----TTC-----------TTT--GAT---CAATGCAAGTT------------ATAAGCAATGCCA-----------------------------------------------------------------------------CCTGCTTGCTTTTA-----------A-----------------------------------------ATCCGC---TTATC--AATCAAA---ATAATTGC---------TT-TC----------------TAATTTGCATTGATCTGAA------------------AG-------------------------------------------------------------------------TTTTCGATGACCCATATCC-----AC-ACCTAATGTAAACCAATGA----AAAACGACATTAAGAACTCTCTATCTCTAAAT-TC---C--AATTAACATTCTCTTACAGACCTGCTAA---TCCTTCTTCGCTTCATATTGGCA---CATTTCCGTTCTTGCCAGTGCSizeHit CountTotal NormTotal
No Reads
dp5
AACAG------------AA--------------------------ACACC---GCTACAAGCGCT---ACAGTGCCAGATATGCTATTAGTAAGGTATTGAAA-------------------AGAAATTTTAAA-GAACAGA------------------------------------ACAACATCACC--------------------------------AAGCAAC--CATTCAAAAGAGAACGAACTCCTTCA----TCCTTGCACAC----------------AA----------------------------T-AAACCGA-------------------------GT---CAATGCAAATAGATGCG-----TCAATGTGA-TGCGATTTTAGCTTTCTTAGATTATTTGTAATGTT--------TAA-TTCG--------T------AATGA--------------------------------------------TATATCCTGTTAGA----AT------ATGC-CT--------------------AAA---------GCT--A---TCATCATTGGTAAATCCAATCATCTATTTGCATTGATCG------------------------------------------------------------------------------------------------------------------------------------------ACAA--------------CAAGAACA---TCTCTCTAAAT-AC---A---ATTAACATTCTCTTACAGACCTGCTTA---TCCTTCTTCGCTACATATTGGTA---CATTTCCGTTCTTGCCAGTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AACAG------------AA--------------------------ACACC---GCTACAAGCGCT---ACAGTGCCAGATATGCTATTAGTAAGGTATTGAAA-------------------AGAAACTTTAAA-GAGCAGA------------------------------------ACAACATCACC--------------------------------AAGCAAC--CATTCAAAAGAGAACGAACTCCTTCA----TCCTTGCACAC----------------AA----------------------------T-AAACCGA-------------------------GT---CAATGCAAATAGATGCG-----TCAATGTGA-TGCGATTTTAGCTTTCTTAGATTATTTGCAATGTT--------TAA-TTCG--------T------AATGA--------------------------------------------TATATCCTGCTAGA----AT------ATGC-CT--------------------AAA---------GCT--A---TGATCATTGGTAAATCCAATCATCTATTTGCATTGATCG------------------------------------------------------------------------------------------------------------------------------------------ACAA--------------CAAGAACA---TCTCTCTAAAT-AC---A---ATTAACATTCTCTTACAGACCTGCTTA---TCCTTCTTCGCTACATATTGGTA---CATTTCCGTTCTTGCCAGTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................GT---CAATGCAAATAGATGCG-----TC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droWil2
TATATA-----------C-----------------------------A-------TATATACGTT---TAAGTACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATCCCCA------------------CA-TCCACATAT------------------------------------------ACAA-----------CAAGTATTTCCGGT------CACAC-----T-C-------GCACACTAATT----------GA---C----ATA---TTTCTT------CT---AA-ACATAACATTCTTTTACAGACCTGCTAA---TCC---TTCGCTTCATATTGGTACTACATTTCCGTACTTGCCAGTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AACCA------------GA--------------------------ACAAC---ACAACAACTGTT---ACTGCGCCCAGTATGCTATTAGTAAGGTATTGAAA-------------------AGCAATTAA----GAGCATAATTAATCAAATGGATATTACAACAACAA-----------------------------TCCCTTGTCCAGACCAG---------------------TTCAG----AACTCCTTCACCTTTCCTTGCACAT----------------------------------------CCAAAC------GCTT----GTCCACGGCTGA--TATGCTAC---AAATGTAAATACATAGATAGATTTC--GTGA---TG-----------------------------------------------------------------------------GCTGCTTGCTTCAA-----------TAT---ACCGATA------TAC--TATATCTATCTATAC-ATATCTAGCGCATATT--C--TATT---------TAT--ATAC---------------AT--------ATTTGG---------------AATATTTATCCTCAAG-TTAAAACTCATCATGATAATCTATTTATTTACATTCGCCAA--------AAGCCGTCGACTAGAGA--------------------CACTC-----A----------CATAC-A-------------------ATTGAAA---TTACTCTAAAT-ACTCTT--AACTTGCATTCTCTTACAGCCCTACTTA---TCC---TACGCTTCATTTTCGCG---AGATTCCGTTCTTGCCAGTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................ACATAGATAGATTTC--GTGA---TG-----------------------------------------------------------------------------GCTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-ATATCTAGCGCATATT--C--T.....................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TTGTCCAGACCAG---------------------TTCAG----AACTCCTTCACCTTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3411.001000000000000000000000000000000000000000000000000000000000100000
.........................................................................................GTAAGGTATTGAAA-------------------AGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AGATAGATTTC--GTGA---TG-----------------------------------------------------------------------------GCTG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGCCAA--------AAGCCGTCGA......................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------AAGCCGTCGACTAGAGA--------------------CACT.......................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
AACATGCAACATACCCAAA--------------------------ACAAC---ACAACAACTTTA---ACTGCGTCCAGTATGCTATTAGTAAGGTATTAAACAAAACAAAATAAAACAAAAAGCAGTTCA----GAGCACAATTAATCAAATGGATATTACAAC---CA-----------------------------TCCCTTGTTCAGTCCAG---------------------TACAG----TATTCCTTCATTATTCCTTGCACAG------------------C---------------------CAAAGC------GCAT----GTC-ACAGCAACTATTT--G-----AGATGTAAATACGTAGACAGAGTTCATAATAA--TG-----------------------------------------------------------------------------CCTGCTTG----TT-----------G--------------------AA----AT------ATAC-ATATCCAATGCATATG--AATGATC---A-----TAT--ATAC---------------TTAATTAT------------------ATATCAATATTTA----------------TTATCATGATAAACTATTTGTTTGCATTCACAAATAG-----GCGCTGCTGACTTAATA-----------CA----C--AATCC-----A-C-------GAACAC-A-------------------ATTGACA---TTTCTCTAAAT-ACTCTTAATACTTGCATTCTCTTACAGCCCTTCCAT---TCC---TTCGCTTCATATTCGTG---AGATTCCGTTCTTGCCAGTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTAATACTTGCATTCTCTTACAG...........................................................2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---TTCGCTTCATATTCGTG---AG...................2111.001000001
droGri2
AACAA------------CACAACAACTAGAACAACAA--------CAACA---ACAGCAAATGCTACAACTGCGCCCAGTATGCTATTAGTAAGGTATTAAAA------------------ATGCAATCAA-AA-GAGCACACTATATCAAAATGACACTGCAACAACAACAAAAAAAACAACAACAACAACAACAATTTCACTTGTAAAGTCCAG---------------------TTCCG----CACTCCTCCTTTGTTCCTTGCACAA------------------T---------------------CCAATCC-AAATCCAATTTTGTC-ACGGCTTCTATAT--GG----AAATGTTAATACATAGACAAATTAC--ATGA---TA-----------------------------------------------------------------------------TCTGCTTCAATATA-----------TACCATT-------------A-TATATAT------ATAT-ATATACAC---ATATT--C-----------------------------AAACGTACATTTAATCAT------------------A------------------AA-TTTGAAAACATCATGGACAACTATTTATTTGCATTTACAAA-AGATGAAAAGCCGTCGACTT--------------------------T------------------CAGAC--------------------CAGACACA---TTTCTCTAAAT-AC---A--ACTT-GCATT-TCTTACAGCC------------C---TTCGCTTCATATTCGTG---AGATTCCGTTCTTGCCAGTGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:49 AM