ID:

dsi_22252

Coordinate:

3l:15760732-15760881 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-34.8	-34.0

Flybase annnotation

exon [3l_15760178_15760786_-]; CDS [3l_15760178_15760786_-]

No Repeatable elements found

Sense Strand Reads

-------------------------------------------------------------------------------------------------------------------------------------------------######################################################################################################### TAAACAAAATAAAACATAAGAAGAGAATTTTAATATTACTTATTAGTTTATAACTTATTTCTAGAGAGAGTAAATGGCAGTCTTAGAGAAAGAAAATGAGATTGCTACTTACTTACGTATGCATATGTATGCGTATAGCCGATAAATGCACATGAATGGCGCCCAACTAATATTTATTTTCCGCTTGGCAATCGTTTTAGGTTGCTTGTTGCTAATCGCCATTAGTTTATCCGTGTGCCTGGCCTGTGGC ************************************************..........((((((.((((((.(((((((((((...........))))))))))).)))).(((((((((....)))))))))..(((((.........(((((((............))))))).......)))))..)).))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR902008 ovaries	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	M024 male body
...............................................................................................ATGAGATTGCTACTTACTTA.......................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................CTTGTTACTAATCGCCATTTTTTT......................	24	3	1	1.00	1	0	1	0	0	0	0
..........................................................ATTTAGAGGGAGTAAATGGC............................................................................................................................................................................	20	3	6	0.17	1	0	0	0	1	0	0
...................GAAGAGAATTTGTATATTAATT.................................................................................................................................................................................................................	22	3	7	0.14	1	0	0	1	0	0	0
..........................................................................TGGGAGTCTTTGAGAAAAAAA...........................................................................................................................................................	21	3	12	0.08	1	0	0	0	0	1	0
......................................................TTATTTCTAGAGGGAAT...................................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0
..................................................................................................................................................................................................ATATAGGTTGCTTGTAGCT.....................................	19	3	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

ATTTGTTTTATTTTGTATTCTTCTCTTAAAATTATAATGAATAATCAAATATTGAATAAAGATCTCTCTCATTTACCGTCAGAATCTCTTTCTTTTACTCTAACGATGAATGAATGCATACGTATACATACGCATATCGGCTATTTACGTGTACTTACCGCGGGTTGATTATAAATAAAAGGCGAACCGTTAGCAAAATCCAACGAACAACGATTAGCGGTAATCAAATAGGCACACGGACCGGACACCG ************************************************..........((((((.((((((.(((((((((((...........))))))))))).)))).(((((((((....)))))))))..(((((.........(((((((............))))))).......)))))..)).))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553488 RT_0-2 hours eggs
.......................................................................................................................................ATCGGTTATTTTCGTGTAC................................................................................................	19	2	4	0.25	1	1	0
.....................................................GGATGAAGATCTCTCT.....................................................................................................................................................................................	16	2	18	0.06	1	0	1

Generated: 04/23/2015 at 08:50 PM