ID:

dsi_2224

Coordinate:

3l:16055125-16055274 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGGAGGAATACTACCAGCAGAAACTAGGAGCAGGCAACAAGGATAACAAGGTGAGGCATCCATATACCTACACTTTTGGAAACTTATCTTCTTACTATTTACTAGTAAGTAAAATAGTATTTACTATTTATAATTTCTATTAAAAAGGGATATTAAGGGATTTTTCAAATAAGACCATAATTAAGGCCCAATCCTTGCAGGAAACAACTAGGATTTTTAATTTTTCTGTGGACACTATAAATATTTATAA ************************************************((((((..((((..............))))..........(((((((.....)))))))..(((((((....))))))).................(((..((((.((..((........))..)).)))).....)))...))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR902009 testis
.............................GAAGCCAAGAAGGATAACAAGGT......................................................................................................................................................................................................	23	3	1	3.00	3	3	0	0	0	0	0
.............................GAAGCCAAGAAGGATAACAAGG.......................................................................................................................................................................................................	22	3	3	2.00	6	6	0	0	0	0	0
.............................GAAGCCAAGAAGGATAACAAGGTGA....................................................................................................................................................................................................	25	3	1	2.00	2	2	0	0	0	0	0
........TACTACCAGCAGAAA...................................................................................................................................................................................................................................	15	0	1	1.00	1	1	0	0	0	0	0
..............................AAGCCAAGAAGGATAACAAGGT......................................................................................................................................................................................................	22	3	2	0.50	1	1	0	0	0	0	0
................................................................................................................................................................................................................TAGGATTATTAATTTTTTTGTG....................	22	2	3	0.33	1	0	1	0	0	0	0
................................................................................................................................................................................................................TAGGATTATTAATTTTTTTGT.....................	21	2	6	0.33	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................TTCCTGTGGACTCTATAAAAA.......	21	3	3	0.33	1	0	0	1	0	0	0
.......................................................................................................................................................................................................GGAGACAACTAGGATGTT.................................	18	2	6	0.17	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................TTTTGAATTTTTCCATGGACA................	21	3	9	0.11	1	0	0	0	0	1	0
.............................................................................................................TAACATAGTAATTATTATTTATAA.....................................................................................................................	24	3	9	0.11	1	0	0	0	0	0	1
............................................................................................................................TACTTATGATTTCTTTTAAAAA........................................................................................................	22	3	19	0.05	1	0	0	0	0	1	0

Anti-sense strand reads

CCCTCCTTATGATGGTCGTCTTTGATCCTCGTCCGTTGTTCCTATTGTTCCACTCCGTAGGTATATGGATGTGAAAACCTTTGAATAGAAGAATGATAAATGATCATTCATTTTATCATAAATGATAAATATTAAAGATAATTTTTCCCTATAATTCCCTAAAAAGTTTATTCTGGTATTAATTCCGGGTTAGGAACGTCCTTTGTTGATCCTAAAAATTAAAAAGACACCTGTGATATTTATAAATATT ************************************************((((((..((((..............))))..........(((((((.....)))))))..(((((((....))))))).................(((..((((.((..((........))..)).)))).....)))...))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M025 embryo
..........................................................AGGTATATGGATGTGAAAACCTTTGAAT....................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................CTAAAAATGAAAAAGACA.....................	18	1	1	1.00	1	1	0	0	0	0
...................................................................................AGTAGAAGGATGATAATTGA...................................................................................................................................................	20	3	7	0.14	1	1	0	0	0	0
CCCTCCTTAAGACGGTCGGC......................................................................................................................................................................................................................................	20	3	8	0.13	1	0	0	0	1	0
...............................TCGGTTCTTCCTATTGTTC........................................................................................................................................................................................................	19	2	11	0.09	1	0	0	1	0	0
................................................................................................................................AGATTAAAAATAATTTTTCACT....................................................................................................	22	3	12	0.08	1	0	1	0	0	0
........................................................GCAGGTATATGGAGTTGAA...............................................................................................................................................................................	19	3	14	0.07	1	0	0	0	0	1
...........................................................................................................................................................................................................TGTGGATCCTAAAAA................................	15	1	20	0.05	1	0	0	1	0	0
.........................................................................................AGAATGATAAAGGATC.................................................................................................................................................	16	1	20	0.05	1	0	0	1	0	0

Generated: 04/24/2015 at 01:50 AM