ID:

dsi_22218

 Coordinate:

2r:9343096-9343375 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2r_9343376_9343718_-]; CDS [2r_9343376_9343718_-]; exon [2r_9342859_9343095_-]; CDS [2r_9342859_9343095_-]; intron [2r_9343096_9343375_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAGCCGGCAGAGCCGACCTTACCAAACAACTGGCCCAAAGGCACGTTTATTTTTGGCCAAGAGATGCGGCGTTTGCTCGGAGAGCTCATGCCCCTGACCGTGAATGCGAAACCGAATACGTCAGCGAATCTCTCGATTGATAAACGATGTGTGCGGATGCTGGCGATCTCGTTCAACGAGGTCAAACGTGTGCCGTGTTGTTAATTGGCGCCCCCCGCCACAATTATGCAAATGCTGAACTTTCGCCTCTCTCTTTCGTTTTGCTTTGCAGTGTTATTGAATAAACCCCGCGTCTACAACAAGGAGCGACTGATCCAGCTG
**************************************************.((.(((......((((...))))....)))))((((((((((......((((((((((((((.....)))))))((((((((((((((...(((((((........)))))..))....))))(((((((.....(((........)))....)))))))))))))))))..((((((((...)))))))).))))))))))).))))))...(((((.....)))))......((((((.((.((((.................)))).)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
..................CGCCGTTGGAATCTTCAGC....................................................................................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
........................TGGAATCTTCAGCAAGGTTGTGCTGA.......................................................................................................................................................................................................................................................................................................................................... 26 0 1 2.00 2 0 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................TACAACAAGGAGCGACTGATCCAG... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................TGGAATCTTCAGCAAGGTTGTTCTGA.......................................................................................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
............CGTCTCCGCCGTTGGAATCTT........................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................................................................................TCTACAACAAGGAGCGACTGATCC..... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..GCCAGTTCGTCGTCTCCGCCGT.................................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................TCAAACGTGCGCCGTGCT.......................................................................................................................... 18 2 1 1.00 1 0 0 0 1 0 0 0 0 0
......GTTCGTCGTCTCCGCCGTT................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................AGGAGCGACTGATCCAGCTG 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................TTGCTCCGTAAGCTCATGCC..................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 1 0 0 0 0 0
.....................CGTTATAATCTTCAGCAA..................................................................................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................GCCGTGTTGTTCATT................................................................................................................... 15 1 9 0.22 2 0 0 0 0 0 0 0 2 0
.................................................................................................................................................................................................................GTGCGGTTGCTGGCG............................................................................................................................................................ 15 1 20 0.20 4 0 0 0 0 0 0 0 4 0
....................................................................................................................................................................................................TGATGAACGATGTGTGGGAA.................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................AATGGTGAACTTTGACCTCT....................................................................... 20 3 10 0.20 2 0 2 0 0 0 0 0 0 0
....................................CAATGTTCTGCTGATTGAGTA................................................................................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................GCGTTTGCCCGGCTAGCTCA......................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................................TTTCGTTTAGCTTTGC.................................................... 16 1 20 0.10 2 0 0 0 0 0 0 0 0 2
.......................................................................................................................................................................................................................................................TGTGCCGTGTAGATAATT................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 1
...............................TTCAGCAAGGTAGTGCC............................................................................................................................................................................................................................................................................................................................................ 17 2 11 0.09 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................CCTGACCGCGTATGCG..................................................................................................................................................................................................................... 16 2 11 0.09 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................GTGCGGTTGCTAGCGAT.......................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................................GCCCGGATAGCTCATGCAC.................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................GCCCGGATAGCTCATGCTC.................................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0
......................GTTGGATTCTTCACCAA..................................................................................................................................................................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................TTTGCTCGGCTAGCTCA......................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................GTGCGGTTGCTAGCGA........................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTCGGTCAAGCAGCAGAGGCGGCAACCTTAGAAGTCGTTCCAACACGACTCACTCATAGATCGGCCGTCTCGGCTGGAATGGTTTGTTGACCGGGTTTCCGTGCAAATAAAAACCGGTTCTCTACGCCGCAAACGAGCCTCTCGAGTACGGGGACTGGCACTTACGCTTTGGCTTATGCAGTCGCTTAGAGAGCTAACTATTTGCTACACACGCCTACGACCGCTAGAGCAAGTTGCTCCAGTTTGCACACGGCACAACAATTAACCGCGGGGGGCGGTGTTAATACGTTTACGACTTGAAAGCGGAGAGAGAAAGCAAAACGAAACGTCACAATAACTTATTTGGGGCGCAGATGTTGTTCCTCGCTGACTAGGTCGAC
**************************************************.((.(((......((((...))))....)))))((((((((((......((((((((((((((.....)))))))((((((((((((((...(((((((........)))))..))....))))(((((((.....(((........)))....)))))))))))))))))..((((((((...)))))))).))))))))))).))))))...(((((.....)))))......((((((.((.((((.................)))).)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR1275483
Male prepupae		 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR1275487
Male larvae
.............................................................................................................................................................................................................................................................................................................................................................GCAGATGTTGTTCCGTGC............. 18 2 5 28.80 144 91 43 3 0 0 0 3 3 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................................................GGCAGATGTTGTTCCGTGC............. 19 3 13 5.31 69 61 8 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................GCAGATGTTGTTCCTTGC............. 18 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................CAGATGTTGTTCCTTGCG............ 18 2 3 1.33 4 1 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................GCAGATGTTGTTCCTTGCG............ 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................GGCAGATGTTGTTCCGTGCT............ 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................CCTTCTCGGCTGGAATGG.......................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................GCGCAGATGTTGTTCCTCGCT............ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................GACTACGGGGGCTGGCA............................................................................................................................................................................................................................ 17 2 11 0.73 8 0 0 0 0 0 7 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................................................................................................................................................GCAGATGTTGTTCCGCGCG............ 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................CGGCCAGCTGGGCTGGAATG........................................................................................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................CGACTACGGGGGCTGGCA............................................................................................................................................................................................................................ 18 2 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................GCCCAGATGTTGTTC.................. 15 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................CGGCAGATGTTGTTCCTTGC............. 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GAGATAGCAGGCAAAACGAAA...................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................CGGCAAGCTCGGCTGGAATG........................................................................................................................................................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................GCAGATGTTGTTCCTTGCGT........... 20 3 9 0.22 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................AAATTGGGGCGTAGATGTTG..................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................GGACTACGGGGGCTGGCA............................................................................................................................................................................................................................ 18 3 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................TTTGGTGCGCAGATGGT...................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................CTACGGGGGCTGGCAGTTA........................................................................................................................................................................................................................ 19 3 14 0.14 2 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................GAAGTCGTTCCTACACTA............................................................................................................................................................................................................................................................................................................................................ 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...GGTCACGGAGCAGAGACGGC..................................................................................................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................................................................................................CAGATGTTGTTCCGCGCGT........... 19 3 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCTGTCGAGTACGGGGA.................................................................................................................................................................................................................................. 17 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AGTGGCTTAGAGAGC.......................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................CTACGGGGACTGGCACGGA........................................................................................................................................................................................................................ 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................CGGCAGATGTTGTTCCTTG.............. 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TAGTGGCTACCCACGCCTA................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACTACGGGGGCTGGCACG.......................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:9343046-9343425 - dsi_22218 CAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAG---CCGGC--AGA-GCCGACCT--------------TACC--AAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--TGCGGCGTTTGCTCGGAGAGC------------TCATGCCCCTGACCGTGAATGCGAAACCGAATACGTCAG---------------CGAATCTC-TCGATTGATAAACGATGT--GTGCGGA-TGCTGGCG------ATCTCG------------TTC---AACGAGGTCAAACGTGTGCCGTGTTGTTAATTGGC-GCCCCCCGCCACAATTATGCAAATGCTGAACTTT---------CGCCTCTCTCTTTCGTTTTGC-TTTGCAGTGTTATTGAATAAACCCCGCGTCTACAACAAGGAGCGACTGATCCAGCTG
droSec2 scaffold_1:6179583-6179957 - dse_661 CAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAG---CCGGC--AGA-GCCGACCT--------------TACC--AAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--TGCGGCGTTTGCTCGGAGAGC------------TCATGCCCCTGACCGTGAATGCGAAACCGAATACGTCAG---------------CGAGTCTC-TCGATTGATAAACGATGT--GTGCGGA-TGCTGGCG------ATCTCG------------TTC---AACGAGGTCAAACGTGTGCCGTGTTGTTAATTGGC-GCCCCCCGCCACAATTATGCAAATGCTGAACTTT---------CGCCTCTCTCTTTC-----GA-TTTGCAGTGTTATTGAATAAACCCCGCGTCTACAACAAGGAGCGACTGATCCAGCTG
dm3 chr2R:8641583-8641962 - CAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAA---CCGGC--AGA-GCCGACCT--------------TACC--AAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--TGCGGCGTTTGCTCGGAGAGC------------TTATGCCCCTGACCGTGAATGCGAAACCGAATGCGTCAG---------------CGAATCTC-TCGATTGATAAACGATGT--GTGCGGA-TGCTGGCG------ATCTCG------------TTC---AACGAGGTCAAACGTGTGCCGTGTTGTTAATTGGC-GCCCCCCGCCACAATTATGCAAATGATGAACTTT---------CGCCTCTCTTTTTCGTTTTGC-TTTGCAGTGTTTTTGAATAAACCCCGCGTCTATAACAGGGAGCGACTGATCCAGCTG
droEre2 scaffold_4845:17166707-17167082 + der_1175 CAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAG---CCGGC--AGA-GCCGACCT--------------TACC--AAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAAA--CTCGGCGTTTGCTCGGAGAGC------------TCATGCCCCTGACCGTGAATGCGAATCCGAATGCGTCAG---------------CGAATCTC-TCGATTGATAAACGATGT--GTGCGGA-TGCTGCCG------ATCTCG------------TTC---AACGAGGTCAAACGTGTGCCGTGTTGTTAATTGGT-GCCCCCCGCCACAATTATGCAAATGCTGAACTTT---------CGCCTCTCTTCTT----TTGC-TTTGCAGTGTTCTTGAATAAACCCCGCGTCTACAACAAGGAGCGACTGATCCAGCTG
droYak3 2R:8307976-8308351 + CAGCCAGTGCGTCGTCACCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAG---CCGGC--AGA-GCCGACCT--------------TACC--AAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--TTCGACGTTTGCTCTGAGAGC------------TCATGCCCCTGACCGTGAATGCGAATCCGAATGCGTCAG---------------CGAATCTC-TCGATTGATAAACGATGT--GTGCGGA-TGCTGCCG------ATCTTG------------TTT---AACGAGGTCAAACGTGTGCCGTGCTGTTGATTGGC-GCCCCACGCCACAATTATGCAAATTCTGAACTTT---------CGCCACTCTTTTTC----TGC-TTTGCAGTGTTCCTTAATAAACCGCGCGTCTACAACAAGGAGCGACTGATTAAGCTG
droEug1 scf7180000409672:3985805-3986165 + CAGCCAGTTTGTCGTCTCCATCGTTGGAATCTTTAGCAAGATTGTGCTGAGTAAGTATCTAT---CCGGC--AGA-GCCGACCC--------------AACC--CAACAACTACTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--AAC-------GCTCGGAGAGC------------CCATGCCCCTGACCGTGAATACGAAT------GTGACTG---------------CGAATCGC-TCGATTGATAAACGATGC----GCGGA-TGCTGGCG------ATCTCG------------CAC---ATCGAGGTCAAACGTGTGCCGTGTTGTTAATTGGT-GGCTC--TGCACAATTATGCAAATGCTGATCTGT---------TGCCTCTCTATTTC-----GA-TTTGCAGCGTTTCTAAACAAACCCCGCATCTACAACAAGGAGCGTCTGGTTCACCTT
droBia1 scf7180000302291:1374964-1375316 + CAGTCAATTCGTCATCTCCGCCGTCGGAATCTTTAGCAAGATTGTGCTGAGTGAGTATCTAT---CCGGC--AGA-GCCGACCT--------------TACC--CAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGCGA--TTC-------GCTCGGAGAGC------------T-GTGCCCCTGACCGTGAATGCGAATGCGACTGCGACTG---------------CGAATGTC-TTGGTTGATAAACGATGT----GCGGA-TGCTGGC---------------------------C---ATCGAGGTCAAACGT-CGCCGTGTTGTTAATTGGT-AGCTC--TGCACAATTATGCAAATGCTGATCTCT---------CGCCCTTCTATTTC-----GT-TTTGCAGTGTTCCTGAACAAACCCCGCGTCTACAACAAGGAACGACTGGTCAAATTG
droTak1 scf7180000415762:499226-499593 + CAGCCAGTTTGTCGTCTCCGCCGTCGGAATCTTCAGCAAGATCGTGCTCAGTGAGTATCTAC---CCGGC--GGA-GCCGACCT--------------TACC--CAATAA--ACTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGCGA--AGC-------GCTCGGAGAGC------------TCATGCCCCTGACCGTGAATGTGAATGCGAAT----CTG---------------CGCATCTC-TCGATTGATAAACGATGT----GCGGA-TGCTGACGATGCTGATCTCG------------CTC---ATCGAGGTCAAACGTGTGCCGTGTGGTTAATTGGT-GCCCC--TACA-AATTATGCAAATGCTGATCTCT---------CGCCTCTCTATTTC----TACATCTTCAGTGTTCCTGAACAAACCCCGCGTCTACAACAAGGAGCGACTGGTCAGCCTC
droEle1 scf7180000491215:402129-402491 + CAGCCAGTTTGTCATCTCCGCCGTCGGAATCTTCAGCAAGATTGTGCTGAGTGAGTATCTAT---CCGGC--AGA-GCCGACCT--------------TACC--CAAAAT---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--AG---CATACGCTCGGAGAGC------------TAATGGCCCTGACCGTGACTGCCAAT------------G---------------CGAATCTC-TTGATTGGTAAACGATGTGTGTGCGAA-TGCTGGCG------ATCTCGCC-A----CG--CTC---ATCGAGGTCAAACGTGTGCCGTG---TTAATTGGT-GCCTC--TGCACAATTATGCAAATGCTGATCTCT---------CACCTCTCTATTT----ACGT-ACTGCAGTGTTCCTGAACAAAACCCGCGTCTACAACAAGGAACGATTGATCCAGATG
droRho1 scf7180000779957:251236-251590 + CAGCCAATTTGTGATCTCCGCCGTTGGAATCTTTAGCAAGATCGTGCTGAGTGAGTATCTAT---CCGGC--AGA-GCCGACCT--------------TACC--CAATAT---CTGGC-CCATTGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--AAC-------GCTCGGAGAAC------------TAGTGCCCCTGACCGTGACTACCAAT------------G---------------CAAATCTC-TCGATCGATAAACGATGT----GCGGA-TGCTGGCG------ATCTCGCG-A----CG--CTC---TTCGAGGTCAAACGTGTGCCGTG---TTAATTGGT-GCCTC--TGCGCAATTATTCAAATGCTGATCTTT---------CGCCTCTCTATTT----ACGT-CTTGCAGTGTTCCTGAACAAAACCCGCGTCTACAACAAGGAACGACTGGTCAAGCTG
droFic1 scf7180000454066:634583-634956 + CAGTCAGTGCGTCATCTCCGCCGTCGGAATCTTCAGCAAGATTGTGCTGTGTGAGTATCTACCGGACGGC--AGT-GCCGACCT--------------TACC--CAACAA---CTGGC-CCAGCGGCAC----------------------------GTTTATT-TTTGGCCAAGAGAGCAGC-------GCTCGCAGAGC------------TTGTGCCCTTGACCGTGAATGCGATTGCGAATGCGAATGCGAATCTCTCGATCGCGGGTCTC-TCGATTGATAAACGATGT----GCGGA-TGCTGGCG------ATCTCG------------CTG---GCCGAGGTCAGGCGTGTGCCGTGTTGTTAATTG--------------TAATTATGCAAATGCTGATCTTT---------CGCCTCTCTCGAT----ATTC-GTTGCAGTGTTTCTCAACAAAACCCGCGTCTACAACAAGGACCGACTGGTGAACCTG
droKik1 scf7180000302476:1399068-1399442 - CAGCCAGTTCGTCGTGGCTGCAGTCGGAATCTTTAGCAAGATCGTGCTGAGTGAGTATCAC-----------GTA-GTCGACCTCCGACCTGGCACCCCACCATCAACAT---TTGGCCCCAAAGGCAC----------------------------GTTTATT-TTTGGCCGAGCGAAATGAAGC----GTTCCGAGAGCATCGTCTCGCATTTTCGGCCCTGACCGTGAATGTG--------------TG---------------TGAATCTC-TCGCTTGATAAACGGTGC--CCACGGA-CGCCGGCG--------CTCGCTGG----CT--CTC---ACCGAGGTCAAGCGTGTGCCGTG---TTAATTGGT-GTCTG--TG-TCAATTATGCAAATGCTGATCTCG------TGCCCTCCCCCCCA--------------TCAGTGTTCCTGAACAAAACCCGTGTCTACAACAAGGAGCGCCTGGTTAACCTG
droAna3 scaffold_13266:8499349-8499676 + TAGCCAAATAGTGATCACTGTCGTTGGGATCTTCAGCAAGTTCGTGCTGAGTAAGTATGGGG--GTCGGCTCGAT-ACTGACCT--------------CACA--CAACAA---CTGGC-CGAAAGGCAC----------------------------GTTTATT-TTCGGCCGAGAGA--GCC-------GTTC------------------------GCCCTGACCGTGAA---------------------------------------TCTTTCCGATTAATTAACGGTGA----GCGGT-TGT---CT------CTCTCGC-------CGC--TCTAAACTAAGGTCGAACGTGTGCCAAG---TTAAATAAC-A---G--GGTACAATTATGCAAATACTGATCTTT---------CGCCTCTGTACTTT----G---ACTATAGCTTTCTGGAACAAAACACATGTGCACAACAGGGATCGTCTCATACGCGTG
droBip1 scf7180000396759:304966-305294 - CAGCCAAATTGTGATCACTGTAGTCGGACTCTTCAGCAAGTTTGTGCTCAGTAAGTATGGGG--GTCGGCTCGAT-ACTGACCT--------------TACC--CAACAT---CTGGC-CGAAAGGCAC----------------------------GTTTATT-TTTGGCCGAGAGA--GCC-------GTTC------------------------GCCCTGACCGTGAA---------------------------------------TCTTTCCGATTAATTAACGGTGT----GCGGTGTTT---CT------CTCTCGC-------CGC--TCTAAATTAAGGTCAAACGTGTGCTAAG---TTAAATGGC-AC-----CGTACAATTATGCAAATACTGATCTTT---------CCCCTCTGTACTTT----GGC-T--TTAGCGTTCTGGAACAAAACCCACGTGTGCAACAGGGATCGTCTAATACACCTG
dp5 3:11076334-11076710 + CAGCCAGTTTGTGATCACAGCAGTCGGAATCTTCAGCAAGATTTTACTGAGTAAGTATGCC----CGGGC--ACACCCCGACCT--------------CGTA--CAACAT---GCGGT-GAAAAGGCAATGACTGTCTGCTCTTCGTTATATGCCGGG-CTATTATTTGGCGACTTGG--CAG-------CTTGGAAGA------------------GCCCCTGACCGTGAT---------------------------------------TCTC-CCAATTGCCAAGCCTTCA----GCTGG-T-----TT------CTCTCGCT-GTGTTCGCATTC--AATTAAGGTCAAGCGTGTGCCCCA---TTAATTGTTTGTCTT--TATATAACTCTGAATATGGTGATATCTACTGATTGTCCTCTCTTTAATT----GTCT-AACACAGTGCTCATGAACAAAACCCGCGTATACAACAAGGAACGACTTGTCGACATG
droPer2 scaffold_4:6395292-6395668 + CAGCCAGTTTGTGATCACAGCAGTCGGAATCTTCAGCAAGATTTTACTGAGTAAGTATGCCC----GTGC--ACACCCCGACCT--------------CGTA--CAACAT---GCGGT-GAAAAGGCAATGACTGACTGCTCTTCGTTATATGCCGGG-CTATTATTTGGCGACTTGG--CAG-------CTTGGAAGA------------------GCCCCTGACCGTGAT---------------------------------------TCTC-CCGATTGCCAAGCCTTCA----GCTGG-T-----TT------CTCTCGCT-GTGTTCGCATTC--AATTAAGGTCAAGCGTGTGCCCAA---TTAATTGTTTGTCTT--TACATAACTCTGAATATGGTGATATCTACTGATTGTCCTCTCTTTAATT----GTCT-AACACAGTGCTCATGAACAAAACCCGCGTATACAACAAGGAACGACTTGTCGACATG
droWil2 scf2_1100000004513:501720-501801 + TAGCCAATTTGTCATCTCGGCTGTGGGTTTATTTAGCAAAGTTGTTTTGGGTAAGAG--------CCAAT--AAA-AAAAACCC--------------CACA--AAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_10324:390244-390300 + CAGCCAATTTGTGATTACTCTCGTTGGCCTCATCAGCAAGTTTGTCCTAGGTAAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:2201021-2201119 + CATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCCTAATGCTCTCTCTC---------CCTCTCTCTCTCT----CTCT-CACACAGTTCTCATGAACAAAACTCAAGTGTACAACAAGGAGCGTCTGATGAAGGCA
droGri2 scaffold_15245:15236999-15237051 - CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTTATGAACAAAACCCGAGTTCACAACAAGGAGCGACTGATTAGGGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAG---CCGGC--AGA-GCCGACCT--------------TACC--AAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--TGCGGCGTTTGCTCGGAGAGC------------TCATGCCCCTGACCGTGAATGCGAAACCGAATACGTCAG---------------CGAATCTC-TCGATTGATAAACGATGT--GTGCGGA-TGCTGGCG------ATCTCG------------TTC---AACGAGGTCAAACGTGTGCCGTGTTGTTAATTGGC-GCCCCCCGCCACAATTATGCAAATGCTGAACTTT---------CGCCTCTCTCTTTCGTTTTGC-TTTGCAGTGTTATTGAATAAACCCCGCGTCTACAACAAGGAGCGACTGATCCAGCTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................CGCCGTTGGAATCTTCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
........................TGGAATCTTCAGCAAGGTTGTGCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000001100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACAAGGAGCGACTGATCCAG...2411.00100000010000000000
............CGTCTCCGCCGTTGGAATCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACAACAAGGAGCGACTGATCC.....2411.00100000010000000000
..GCCAGTTCGTCGTCTCCGCCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
......GTTCGTCGTCTCCGCCGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCGACTGATCCAGCTG2011.00100010000000000000
droSec2
CAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAG---CCGGC--AGA-GCCGACCT--------------TACC--AAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--TGCGGCGTTTGCTCGGAGAGC------------TCATGCCCCTGACCGTGAATGCGAAACCGAATACGTCAG---------------CGAGTCTC-TCGATTGATAAACGATGT--GTGCGGA-TGCTGGCG------ATCTCG------------TTC---AACGAGGTCAAACGTGTGCCGTGTTGTTAATTGGC-GCCCCCCGCCACAATTATGCAAATGCTGAACTTT---------CGCCTCTCTCTTTC-----GA-TTTGCAGTGTTATTGAATAAACCCCGCGTCTACAACAAGGAGCGACTGATCCAGCTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGAGCGACTGATCCAGCT.2311.0010100
..GCCAGTTCGTCGTCTCCGCCGTTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..................................................................................................................................................................TT-TTTGGCCAAGAGA--TGCGGC..........................................................................................................................................................................................................................................................................................................................2111.0010001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGAATAAACCCCGCGTCTACAACA....................2811.0010010
...........................................................................................................................................................................................................................................................................................ATAAACGATGT--GTGCGGA-TGC.................................................................................................................................................................................................2111.0010100
...........................AATCTTCAGCAAGGTTGTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..............................CTTCAGCAAGGTTGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGCGACTGATCCAGCT.2011.0010100
............................................................................................................................................................................................................................................................................................TAAACGATGT--GTGCGGG-AT..................................................................................................................................................................................................19200.0511000
dm3
CAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAA---CCGGC--AGA-GCCGACCT--------------TACC--AAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--TGCGGCGTTTGCTCGGAGAGC------------TTATGCCCCTGACCGTGAATGCGAAACCGAATGCGTCAG---------------CGAATCTC-TCGATTGATAAACGATGT--GTGCGGA-TGCTGGCG------ATCTCG------------TTC---AACGAGGTCAAACGTGTGCCGTGTTGTTAATTGGC-GCCCCCCGCCACAATTATGCAAATGATGAACTTT---------CGCCTCTCTTTTTCGTTTTGC-TTTGCAGTGTTTTTGAATAAACCCCGCGTCTATAACAGGGAGCGACTGATCCAGCTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...CCAGTTCGTCGTCTCCGCCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000
.........................GGAATCTTCAGCAAGGTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GTTCGTCGTCTCCGCCGTTGGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACCCCGCGTCTATAAC.....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCGTCGTCTCCGCCGTTGGAATCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACCCCGCGTCTATAACAG...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................GTTGGAATCTTCAGCAAGGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAACCCCGCGTCTATAACA....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTGGAATCTTCAGCAAGGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGCGACTGATCCAGCT.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TGGCCAAGAGA--TGCGGCG.........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGGAGCGACTGATCCAG...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................TGCTCGGAGAGC------------TTATGCCCCTGACCGTG..............................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................CGTCAG---------------CGAATCTC-TCGATTGA........................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATAACAGGGAGCGAC...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TAAACGATGT--GTGCGGA-T...................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGTTTTGC-TTTGCAG..................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TCTTCAGCAAGGTTGTGCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...CCAGTTCGTCGTCTCCGCCGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCTCCGCCGTTGGAATCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTCTTTTTCGTTTTGC-TTTG.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTGAGTATCTAA---CCGGC--AGA-GCCGACC.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................GCGGCGTTTGCTCGGAGAGC------------T..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACAGGGAGCGACTGATCCAGC..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................GAATGCGAAACCGAATGCGTC..........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GGCGTTTGCTCGGAGAGC------------TTA............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................ATT-TTTGGCCAAGAGA--TGCGGCGTTTG.....................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................TCCGCCGTTGGAATCTTCAGCAAGGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATAACAGGGAGCGACTGATCCAGC..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................CAAACGTGTGCCGTGTTG....................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.......................TTGGAATCTTCAGCAAGGTTGTGCTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCCGCGTCTATAACAGGGAGCG.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACCCCGCGTCTATAA......................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCCAGTTCGTCGTCTCCGCCGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................AATCTTCAGCAAGGTTGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................A--TGCGGCGTTTGCTCGGAGAG............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TCGGAGAGC------------TTATGCCCCTGA...................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................ATGATGAACTTT---------CGCCTC.........................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CTTCAGCAAGGTTGTGCTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................AACGATGT--GTGCGGA-TGCT................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTTGAATAAACCCCGCGTCTATA.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CGATGT--GTGCGGA-TGCTGGCG------ATCT..................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................GTATCTAA---CCGGC--AGA-GC......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........CGTCGTCTCCGCCGTTGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CGTCTCCGCCGTTGGAATCTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................CGTTGGAATCTTCAGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAATAAACCCCGCGTCTA.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.......................................................................................................................................................................................................................................................GTCAG---------------CGAATCTC-TCGATTGA........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..................CGCCGTTGGAATCTTCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................................................................................................................................................CGATGT--GTGCGGA-TGCTG...............................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTGTTTTTGAATAAAC...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................GTGCTGAGTGAGTATCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAGCCAGTTCGTCGTCTCCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAG---CCGGC--AGA-GCCGACCT--------------TACC--AAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAAA--CTCGGCGTTTGCTCGGAGAGC------------TCATGCCCCTGACCGTGAATGCGAATCCGAATGCGTCAG---------------CGAATCTC-TCGATTGATAAACGATGT--GTGCGGA-TGCTGCCG------ATCTCG------------TTC---AACGAGGTCAAACGTGTGCCGTGTTGTTAATTGGT-GCCCCCCGCCACAATTATGCAAATGCTGAACTTT---------CGCCTCTCTTCTT----TTGC-TTTGCAGTGTTCTTGAATAAACCCCGCGTCTACAACAAGGAGCGACTGATCCAGCTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................CGCCGTTGGAATCTTCAGCAAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAACCCCGCGTCTACAACAAGG.................2611.0010100000
.............................................................................................................................................................................................................................................................................................AAACGATGT--GTGCGGA-TG..................................................................................................................................................................................................1811.0010000100
.............................................................................................................................................................................................................................................................................................AAACGATGT--GTGCGGA-TGT.................................................................................................................................................................................................1911.0010000100
..................CGCCGTTGGAATCTTCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
............................ATCTTCAGCAAGGTTGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAACCCCGCGTCTACAACAAGGAGC..............2911.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGAGCGACTGATCCAGCT.2311.0010000100
droYak3
CAGCCAGTGCGTCGTCACCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGAGTGAGTATCTAG---CCGGC--AGA-GCCGACCT--------------TACC--AAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--TTCGACGTTTGCTCTGAGAGC------------TCATGCCCCTGACCGTGAATGCGAATCCGAATGCGTCAG---------------CGAATCTC-TCGATTGATAAACGATGT--GTGCGGA-TGCTGCCG------ATCTTG------------TTT---AACGAGGTCAAACGTGTGCCGTGCTGTTGATTGGC-GCCCCACGCCACAATTATGCAAATTCTGAACTTT---------CGCCACTCTTTTTC----TGC-TTTGCAGTGTTCCTTAATAAACCGCGCGTCTACAACAAGGAGCGACTGATTAAGCTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCGCGCGTCTACAACAAGGAGC..............2512.00200200000000
CAGCCAGTGCGTCGTCACCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000
............................ATCTTCAGCAAGGTTGTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..GCCAGTGCGTCGTCACCGCCGTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.....................................................................................................................................................................................................................................GAATGCGAATCCGAATGCGTC..........................................................................................................................................................................................................................................................2111.00100100000000
................................................................................................................................................................................................................................................................................CTC-TCGATTGATAAACGATGT--GTGCGGA-T...................................................................................................................................................................................................2911.00100100000000
...............................................................................................................................................................................................CTCTGAGAGC------------TCATGCCCCTGACCG................................................................................................................................................................................................................................................................................2511.00100100000000
............................ATCTTCAGCAAGGTTGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
..................................................GTGAGTATCTAG---CCGGC--AGA-GCCGACC.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGCGCGTCTACAACAAGGA................2211.00100100000000
......GTGCGTCGTCACCGCCGTTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
droEug1
CAGCCAGTTTGTCGTCTCCATCGTTGGAATCTTTAGCAAGATTGTGCTGAGTAAGTATCTAT---CCGGC--AGA-GCCGACCC--------------AACC--CAACAACTACTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--AAC-------GCTCGGAGAGC------------CCATGCCCCTGACCGTGAATACGAAT------GTGACTG---------------CGAATCGC-TCGATTGATAAACGATGC----GCGGA-TGCTGGCG------ATCTCG------------CAC---ATCGAGGTCAAACGTGTGCCGTGTTGTTAATTGGT-GGCTC--TGCACAATTATGCAAATGCTGATCTGT---------TGCCTCTCTATTTC-----GA-TTTGCAGCGTTTCTAAACAAACCCCGCATCTACAACAAGGAGCGTCTGGTTCACCTTSizeHit CountTotal NormTotal
No Reads
droBia1
CAGTCAATTCGTCATCTCCGCCGTCGGAATCTTTAGCAAGATTGTGCTGAGTGAGTATCTAT---CCGGC--AGA-GCCGACCT--------------TACC--CAACAA---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGCGA--TTC-------GCTCGGAGAGC------------T-GTGCCCCTGACCGTGAATGCGAATGCGACTGCGACTG---------------CGAATGTC-TTGGTTGATAAACGATGT----GCGGA-TGCTGGC---------------------------C---ATCGAGGTCAAACGT-CGCCGTGTTGTTAATTGGT-AGCTC--TGCACAATTATGCAAATGCTGATCTCT---------CGCCCTTCTATTTC-----GT-TTTGCAGTGTTCCTGAACAAACCCCGCGTCTACAACAAGGAACGACTGGTCAAATTGSizeHit CountTotal NormTotal
No Reads
droTak1
CAGCCAGTTTGTCGTCTCCGCCGTCGGAATCTTCAGCAAGATCGTGCTCAGTGAGTATCTAC---CCGGC--GGA-GCCGACCT--------------TACC--CAATAA--ACTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGCGA--AGC-------GCTCGGAGAGC------------TCATGCCCCTGACCGTGAATGTGAATGCGAAT----CTG---------------CGCATCTC-TCGATTGATAAACGATGT----GCGGA-TGCTGACGATGCTGATCTCG------------CTC---ATCGAGGTCAAACGTGTGCCGTGTGGTTAATTGGT-GCCCC--TACA-AATTATGCAAATGCTGATCTCT---------CGCCTCTCTATTTC----TACATCTTCAGTGTTCCTGAACAAACCCCGCGTCTACAACAAGGAGCGACTGGTCAGCCTCSizeHit CountTotal NormTotal
No Reads
droEle1
CAGCCAGTTTGTCATCTCCGCCGTCGGAATCTTCAGCAAGATTGTGCTGAGTGAGTATCTAT---CCGGC--AGA-GCCGACCT--------------TACC--CAAAAT---CTGGC-CCAAAGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--AG---CATACGCTCGGAGAGC------------TAATGGCCCTGACCGTGACTGCCAAT------------G---------------CGAATCTC-TTGATTGGTAAACGATGTGTGTGCGAA-TGCTGGCG------ATCTCGCC-A----CG--CTC---ATCGAGGTCAAACGTGTGCCGTG---TTAATTGGT-GCCTC--TGCACAATTATGCAAATGCTGATCTCT---------CACCTCTCTATTT----ACGT-ACTGCAGTGTTCCTGAACAAAACCCGCGTCTACAACAAGGAACGATTGATCCAGATGSizeHit CountTotal NormTotal
No Reads
droRho1
CAGCCAATTTGTGATCTCCGCCGTTGGAATCTTTAGCAAGATCGTGCTGAGTGAGTATCTAT---CCGGC--AGA-GCCGACCT--------------TACC--CAATAT---CTGGC-CCATTGGCAC----------------------------GTTTATT-TTTGGCCAAGAGA--AAC-------GCTCGGAGAAC------------TAGTGCCCCTGACCGTGACTACCAAT------------G---------------CAAATCTC-TCGATCGATAAACGATGT----GCGGA-TGCTGGCG------ATCTCGCG-A----CG--CTC---TTCGAGGTCAAACGTGTGCCGTG---TTAATTGGT-GCCTC--TGCGCAATTATTCAAATGCTGATCTTT---------CGCCTCTCTATTT----ACGT-CTTGCAGTGTTCCTGAACAAAACCCGCGTCTACAACAAGGAACGACTGGTCAAGCTGSizeHit CountTotal NormTotal
No Reads
droFic1
CAGTCAGTGCGTCATCTCCGCCGTCGGAATCTTCAGCAAGATTGTGCTGTGTGAGTATCTACCGGACGGC--AGT-GCCGACCT--------------TACC--CAACAA---CTGGC-CCAGCGGCAC----------------------------GTTTATT-TTTGGCCAAGAGAGCAGC-------GCTCGCAGAGC------------TTGTGCCCTTGACCGTGAATGCGATTGCGAATGCGAATGCGAATCTCTCGATCGCGGGTCTC-TCGATTGATAAACGATGT----GCGGA-TGCTGGCG------ATCTCG------------CTG---GCCGAGGTCAGGCGTGTGCCGTGTTGTTAATTG--------------TAATTATGCAAATGCTGATCTTT---------CGCCTCTCTCGAT----ATTC-GTTGCAGTGTTTCTCAACAAAACCCGCGTCTACAACAAGGACCGACTGGTGAACCTGSizeHit CountTotal NormTotal
No Reads
droKik1
CAGCCAGTTCGTCGTGGCTGCAGTCGGAATCTTTAGCAAGATCGTGCTGAGTGAGTATCAC-----------GTA-GTCGACCTCCGACCTGGCACCCCACCATCAACAT---TTGGCCCCAAAGGCAC----------------------------GTTTATT-TTTGGCCGAGCGAAATGAAGC----GTTCCGAGAGCATCGTCTCGCATTTTCGGCCCTGACCGTGAATGTG--------------TG---------------TGAATCTC-TCGCTTGATAAACGGTGC--CCACGGA-CGCCGGCG--------CTCGCTGG----CT--CTC---ACCGAGGTCAAGCGTGTGCCGTG---TTAATTGGT-GTCTG--TG-TCAATTATGCAAATGCTGATCTCG------TGCCCTCCCCCCCA--------------TCAGTGTTCCTGAACAAAACCCGTGTCTACAACAAGGAGCGCCTGGTTAACCTGSizeHit CountTotal NormTotal
No Reads
droAna3
TAGCCAAATAGTGATCACTGTCGTTGGGATCTTCAGCAAGTTCGTGCTGAGTAAGTATGGGG--GTCGGCTCGAT-ACTGACCT--------------CACA--CAACAA---CTGGC-CGAAAGGCAC----------------------------GTTTATT-TTCGGCCGAGAGA--GCC-------GTTC------------------------GCCCTGACCGTGAA---------------------------------------TCTTTCCGATTAATTAACGGTGA----GCGGT-TGT---CT------CTCTCGC-------CGC--TCTAAACTAAGGTCGAACGTGTGCCAAG---TTAAATAAC-A---G--GGTACAATTATGCAAATACTGATCTTT---------CGCCTCTGTACTTT----G---ACTATAGCTTTCTGGAACAAAACACATGTGCACAACAGGGATCGTCTCATACGCGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACAAAACACATGTGCAC........................2111.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACAACAGGGATCGTCTCA........2111.001000001
..GCCAAATAGTGATCACTGTCGTTGGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
..............................................................................................................................................................TTTATT-TTCGGCCGAGAGA--GC..............................................................................................................................................................................................................................................................................................................................2111.001000010
............GATCACTGTCGTTGGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.......ATAGTGATCACTGTCGTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAACAGGGATCGTCTCATACGCGT.2711.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ACTATAGCTTTCTGGAACA......................................2011.001100000
droBip1
CAGCCAAATTGTGATCACTGTAGTCGGACTCTTCAGCAAGTTTGTGCTCAGTAAGTATGGGG--GTCGGCTCGAT-ACTGACCT--------------TACC--CAACAT---CTGGC-CGAAAGGCAC----------------------------GTTTATT-TTTGGCCGAGAGA--GCC-------GTTC------------------------GCCCTGACCGTGAA---------------------------------------TCTTTCCGATTAATTAACGGTGT----GCGGTGTTT---CT------CTCTCGC-------CGC--TCTAAATTAAGGTCAAACGTGTGCTAAG---TTAAATGGC-AC-----CGTACAATTATGCAAATACTGATCTTT---------CCCCTCTGTACTTT----GGC-T--TTAGCGTTCTGGAACAAAACCCACGTGTGCAACAGGGATCGTCTAATACACCTGSizeHit CountTotal NormTotal
No Reads
dp5
CAGCCAGTTTGTGATCACAGCAGTCGGAATCTTCAGCAAGATTTTACTGAGTAAGTATGCC----CGGGC--ACACCCCGACCT--------------CGTA--CAACAT---GCGGT-GAAAAGGCAATGACTGTCTGCTCTTCGTTATATGCCGGG-CTATTATTTGGCGACTTGG--CAG-------CTTGGAAGA------------------GCCCCTGACCGTGAT---------------------------------------TCTC-CCAATTGCCAAGCCTTCA----GCTGG-T-----TT------CTCTCGCT-GTGTTCGCATTC--AATTAAGGTCAAGCGTGTGCCCCA---TTAATTGTTTGTCTT--TATATAACTCTGAATATGGTGATATCTACTGATTGTCCTCTCTTTAATT----GTCT-AACACAGTGCTCATGAACAAAACCCGCGTATACAACAAGGAACGACTTGTCGACATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................AGCAGTCGGAATCTTCAGCAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000200000
..................AGCAGTCGGAATCTTCAGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAACAAAACCCGCGTATACAACAAG..................2811.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAACGACTTGTCGACAT.2011.0010100000000
droPer2
CAGCCAGTTTGTGATCACAGCAGTCGGAATCTTCAGCAAGATTTTACTGAGTAAGTATGCCC----GTGC--ACACCCCGACCT--------------CGTA--CAACAT---GCGGT-GAAAAGGCAATGACTGACTGCTCTTCGTTATATGCCGGG-CTATTATTTGGCGACTTGG--CAG-------CTTGGAAGA------------------GCCCCTGACCGTGAT---------------------------------------TCTC-CCGATTGCCAAGCCTTCA----GCTGG-T-----TT------CTCTCGCT-GTGTTCGCATTC--AATTAAGGTCAAGCGTGTGCCCAA---TTAATTGTTTGTCTT--TACATAACTCTGAATATGGTGATATCTACTGATTGTCCTCTCTTTAATT----GTCT-AACACAGTGCTCATGAACAAAACCCGCGTATACAACAAGGAACGACTTGTCGACATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................AATTGTTTGTCTT--TACATAACTCTG.......................................................................................................2512.002200000
..........GTGATCACAGCAGTCGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.....AGTTTGTGATCACAGCAGTCGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.AGCCAGTTTGTGATCACAGCAGTCGGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
......................GTCGGAATCTTCAGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
...................GCAGTCGGAATCTTCAGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..................AGCAGTCGGAATCTTCAGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droWil2
TAGCCAATTTGTCATCTCGGCTGTGGGTTTATTTAGCAAAGTTGTTTTGGGTAAGAG--------CCAAT--AAA-AAAAACCC--------------CACA--AAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....CAATTTGTCATCTCGGCTGTGGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00210010
............................TTATTTAGCAAAGTTGTTTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................GTGGGTTTATTTAGCAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
......ATTTGTCATCTCGGCTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.............ATCTCGGCTGTGGGTTTATTTAGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
TAGCCAATTTGTCATCTCGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
........TTGTCATCTCGGCTGTGGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
CAGCCAATTTGTGATTACTCTCGTTGGCCTCATCAGCAAGTTTGTCCTAGGTAAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................TCATCAGCAAGTTTGTCCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000001000000000100000000000000000000000000000000
................ACTCTCGTTGGCCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.001000000000000000000000000000000000000000000000000000000000100000
................ACTCTCGTTGGCCTCATCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000100000
........TTGTGATTACTCTCGTTGGCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.........TGTGATTACTCTCGTTGGCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
....CAATTTGTGATTACTCTCGTTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
....................................CAAGTTTGTCCTAGGTAAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111.001000000000000000000000000000000000000000000000000000000000000010
.............ATTACTCTCGTTGGCCTCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
CATATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCCTAATGCTCTCTCTC---------CCTCTCTCTCTCT----CTCT-CACACAGTTCTCATGAACAAAACTCAAGTGTACAACAAGGAGCGTCTGATGAAGGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAACAAAACTCAAGTGTACAA......................2411.001100000
droGri2
CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATTTATGAACAAAACCCGAGTTCACAACAAGGAGCGACTGATTAGGGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGAGCGACTGATTAGGGC.2111.00101

Generated: 05/18/2015 at 03:26 PM