ID:

dsi_22207

 Coordinate:

3r:17643830-17643979 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.0 -30.7 -30.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATGATTTAACTAACAAAACTTTCCTGCTATTCCTGTTCTTGTTCTTGTTTTTCGCTGCTCTCCCCTTCAACATGCAATTTATTGCACAACGATGACGACGACGTCGACGACGCAACCAAAACACACGGAAAAAATACGGATAACTTTCACTTCACTCCGGCTGGTCTGGACTGGGGGATTGGTATGGATTGGATTGTTAGTCGGGCGAGATGCGTAGCTCGGCAAAGGAAATTGGCGCATTTAATGAGAA
**************************************************.((..((((.((((((......(((((....)))))...((.(((((....))))).))......(((...((..((((........(((.....))).......))))..))...)))...))))))..))))..))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..........................................................................................................................................................................................................................TCGGGAGAGGAAATTGGCG............. 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GAGATGCGTAGCTCGGCAA......................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................ATTGGTATGGATTGGATTG...................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TCGGAAGAGGTAATTGGCG............. 19 3 20 0.60 12 0 1 0 0 8 0 0 3 0
........................TGATATTCCTGTACTAGTT............................................................................................................................................................................................................... 19 3 20 0.45 9 3 0 0 0 0 0 6 0 0
..GATTTAACTCTCAAAACTT..................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTGGTAAGCGTTGGATTGTT.................................................... 20 3 7 0.29 2 2 0 0 0 0 0 0 0 0
..GATTTAACTCTCAAAACT...................................................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTTAGTCGGGCGCGA........................................ 15 1 4 0.25 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................GGTAAGGGTTGGATTGTT.................................................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0
.......................CTGATATTCCTGTACTAGTT............................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................TGGTTTGGACTGGGG.......................................................................... 15 1 11 0.09 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................ACTCTGGCTGTTCTGGA................................................................................ 17 2 14 0.07 1 0 0 0 0 0 1 0 0 0
.................................................................................................................AACGAAAACTCACGGAAA....................................................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................CTTCCGGCTGGTCTGGAGT.............................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................TGGTAAGCGTTGGATTGTT.................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGGTATGGACTTGGGGA........................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TACTAAATTGATTGTTTTGAAAGGACGATAAGGACAAGAACAAGAACAAAAAGCGACGAGAGGGGAAGTTGTACGTTAAATAACGTGTTGCTACTGCTGCTGCAGCTGCTGCGTTGGTTTTGTGTGCCTTTTTTATGCCTATTGAAAGTGAAGTGAGGCCGACCAGACCTGACCCCCTAACCATACCTAACCTAACAATCAGCCCGCTCTACGCATCGAGCCGTTTCCTTTAACCGCGTAAATTACTCTT
**************************************************.((..((((.((((((......(((((....)))))...((.(((((....))))).))......(((...((..((((........(((.....))).......))))..))...)))...))))))..))))..))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
...................................................................................................................GGTTTTGTGTGCCCTTCTT.................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
............................................................AGGGGTAGTGCTACGTTAAA.......................................................................................................................................................................... 20 3 13 0.46 6 0 6 0 0 0 0
.....................................................................................................................................................................................................ATCTGCCCGCGCTACGC.................................... 17 2 5 0.20 1 1 0 0 0 0 0
.......................................................................................................ATCTGCTGCGTTGGT.................................................................................................................................... 15 1 7 0.14 1 0 0 1 0 0 0
...................................................................................................................................................................................ACTATTCCTAACCTAACA..................................................... 18 2 9 0.11 1 0 0 0 1 0 0
.................................................................................................................................................................ACCAGCCCTGCCGCCCTAA...................................................................... 19 3 10 0.10 1 0 1 0 0 0 0
.......................................................ACGGGAGGGAAAGTTGT.................................................................................................................................................................................. 17 2 12 0.08 1 0 0 0 0 0 1
.................................................AAAGCGACTAGGGGGAAAGT..................................................................................................................................................................................... 20 3 15 0.07 1 0 1 0 0 0 0
...........TTGTTTTGAATGGACG............................................................................................................................................................................................................................... 16 1 17 0.06 1 0 0 0 0 1 0
..................................................AAGCTATGATAGGGGAAGT..................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0
.............................ATGCACAAGAACAAGAAC........................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1 0

Generated: 04/24/2015 at 12:35 AM