ID:

dsi_22192

Coordinate:

3r:4400924-4401073 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-21.4	-21.4	-21.4	-21.2

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	-

mature

star

Sense Strand Reads

AGCCCACGCCGCCCAGGAGCAGCGCCTTCAGGCCTGTGATAACAGATCAGGTAAGCGATCTAACTTTATAGTGTCAAATGTATCAAGTATCTTTTAGTTACAAGATATCGTAATCAAAGTTATAGAACGGGGTTGTACTAAGTGAATATACCAAGGTACCTGAATATACCTTTGGTTTTTAGCAATTATTATTATTCTAGATTCGTTTTTAAAGTATGCAATAGCCAGATAGAAGTGTTTCCGAATGTAA ************************************************.........((......(((((((((((.((((((.(((((((((((.(((((....((((...............))))..))))))))))...........)))))).)))...))).)))))...........))))))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553486 Makindu_3 day-old ovaries
.................................................GGTAAGCGATCTAACT.........................................................................................................................................................................................	16	0	3	1.67	5	5	0	0	0
....................................................................................................................................................................TATTCCGTTGGTTTGTAGCAAT................................................................	22	3	1	1.00	1	0	1	0	0
.................................................GGTAAGCGATCTAACTT........................................................................................................................................................................................	17	0	3	1.00	3	3	0	0	0
..............................................ACAGGTAAGCGATCTAAC..........................................................................................................................................................................................	18	1	1	1.00	1	1	0	0	0
.................................................GGTAAGCGATCTAAC..........................................................................................................................................................................................	15	0	3	0.67	2	2	0	0	0
.................................................GGTAAGCGATCTAACTTCATA....................................................................................................................................................................................	21	1	2	0.50	1	1	0	0	0
..................................................GTAAGCGATCTAACT.........................................................................................................................................................................................	15	0	3	0.33	1	1	0	0	0
...........................................................................................................................................................................................ATGAGTATACTAGATTCGTTTTT........................................	23	3	6	0.17	1	1	0	0	0
...............................................................................................................................................................................................................TTTAAAGTATGGAGTAGCT........................	19	3	20	0.05	1	0	0	1	0
....................................................................................................................................................................................................CTAGATAGGTTTTTAAA.....................................	17	2	20	0.05	1	0	0	0	1

Anti-sense strand reads

TCGGGTGCGGCGGGTCCTCGTCGCGGAAGTCCGGACACTATTGTCTAGTCCATTCGCTAGATTGAAATATCACAGTTTACATAGTTCATAGAAAATCAATGTTCTATAGCATTAGTTTCAATATCTTGCCCCAACATGATTCACTTATATGGTTCCATGGACTTATATGGAAACCAAAAATCGTTAATAATAATAAGATCTAAGCAAAAATTTCATACGTTATCGGTCTATCTTCACAAAGGCTTACATT ************************************************.........((......(((((((((((.((((((.(((((((((((.(((((....((((...............))))..))))))))))...........)))))).)))...))).)))))...........))))))......))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
.................................................................................................................................................................................................................................GTCTATCTTCACAAAGGCTTA....	21	0	1	1.00	1	0	1	0	0	0
..................................................CATTCGCTAGATTGAA........................................................................................................................................................................................	16	0	3	0.67	2	2	0	0	0	0
.................................................CCATTCGCTAGATTGAA........................................................................................................................................................................................	17	0	3	0.67	2	2	0	0	0	0
...................................................ATTCGCTAGATTGAA........................................................................................................................................................................................	15	0	3	0.33	1	1	0	0	0	0
.................................................CCATTCGCTAGATTG..........................................................................................................................................................................................	15	0	3	0.33	1	1	0	0	0	0
......GCGGCTGGTCCTAGTCCCGGA...............................................................................................................................................................................................................................	21	3	4	0.25	1	0	0	1	0	0
...................................................ATTCGCTAGATTGAG........................................................................................................................................................................................	15	1	5	0.20	1	1	0	0	0	0
TTGGGTGCGGCGGGCCC.........................................................................................................................................................................................................................................	17	2	8	0.13	1	1	0	0	0	0
.............................................................TTAAAATATCAAAGGTTACAT........................................................................................................................................................................	21	3	17	0.12	2	0	0	0	2	0
...........................AGTCCGGCCACTAGTGT..............................................................................................................................................................................................................	17	2	9	0.11	1	1	0	0	0	0
.................................................................................TCGTTCCTAGAAAAACAATG.....................................................................................................................................................	20	3	11	0.09	1	0	0	0	0	1
......................GAGGAAGGCCCGACACTAT.................................................................................................................................................................................................................	19	3	19	0.05	1	1	0	0	0	0
......................................................................................................................................................................................................................................TCTTCGCAAAGGATTCCA..	18	3	20	0.05	1	1	0	0	0	0

Generated: 04/24/2015 at 05:37 AM