dsi_22174

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-
(CTG)n	Simple_repeat	Simple_repeat	+

TTGCATCCCCGCAACATGCCAGCGGTAGTACTTACAAGCAACATGTTGCCAGCGGCAACAATAGTCACGCAGCCACAATCAATCATCAACAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAGCAGCAGCAGCAGCAACAACAGCAACAACAACGTTTTAGCTTTAACTCAAACAATCAGCAACATGTACAGGAACAACACCAGCAGCAGCAGCAACAGCAGCAATCCCTGCTCGATCTCAG ************************************************************...............................((........)).........................((.((....)).))......((((((......)))...)))............*****************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M023 head	M053 female body	O001 Testis	SRR618934 dsim w501 ovaries	O002 Head
...............................CTACAAGCAACATGTTGCCAGCGGC..................................................................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0	0
............AACATGCCAGCGGTA...............................................................................................................................................................................................................................	15	0	1	1.00	1	0	0	0	0	0	1	0
..................................CAAGCAACATGTTGCCAGCGGC..................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0
............................................................................................................................................................AACAACGTTTTAGCTTTAACTCAAACA...................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................CAACAGCAACAACAACGT......................................................................................	18	0	3	1.00	3	0	0	0	0	3	0	0
..............................................................AGTCACGCAGCCACAATCAATCATC...................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
................................TACAAGCAACATGTTGCCAGCGGCA.................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................GCAGCAGCAACAACAGCAACAACA..........................................................................................	24	0	4	0.75	3	0	0	0	0	0	0	3
.....................................................................................................................................GCAGCAGCACCAACAACAGCAACAAC...........................................................................................	26	1	8	0.13	1	1	0	0	0	0	0	0
...............................................................................................................................................................................CTCAAAGAATCAGGAAC..........................................................	17	2	15	0.07	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................ACAACACCAGCAGCA.................................	15	0	20	0.05	1	1	0	0	0	0	0	0

AACGTAGGGGCGTTGTACGGTCGCCATCATGAATGTTCGTTGTACAACGGTCGCCGTTGTTATCAGTGCGTCGGTGTTAGTTAGTAGTTGTTGCGTGTGTGTGCGGGTGTTGGCGGCAGATGATGGTTGTCGTCGTCGTCGTCGTTGTTGTCGTTGTTGTTGCAAAATCGAAATTGAGTTTGTTAGTCGTTGTACATGTCCTTGTTGTGGTCGTCGTCGTCGTTGTCGTCGTTAGGGACGAGCTAGAGTC *****************************************************************...............................((........)).........................((.((....)).))......((((((......)))...)))............************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body	M025 embryo
.................................................................................................................................................................................................AGATGGCCTGGTTGTGGTCGT....................................	21	3	2	1.50	3	3	0	0	0	0	0	0	0
.................................................................................................................................................................................GTTTGTTAGTCGTTGTACATG....................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
..................................................................................................................GGCAGACGATGGTAGCCGTCGT..................................................................................................................	22	3	3	0.33	1	0	0	0	0	1	0	0	0
..............................................................................................................................................................................TGAGTTTTTTAGTCGTTATAA.......................................................	21	3	18	0.33	6	0	0	6	0	0	0	0	0
..............................................................................................................................................................................TGAGTTTTTTAGTCGTTATA........................................................	20	2	4	0.25	1	0	0	1	0	0	0	0	0
..........................................................................................................................................TCGTCGTTGTTGTCGT................................................................................................	16	0	20	0.20	4	0	0	0	4	0	0	0	0
..........................................................................................................................ATGGTTGTCGTCTTCGTCGT............................................................................................................	20	1	6	0.17	1	1	0	0	0	0	0	0	0
...................................................CGCCGCTGCTATCAGTACG....................................................................................................................................................................................	19	3	10	0.10	1	0	0	0	1	0	0	0	0
......................................................................................................................................................TCGTTGTTGTTGCAA.....................................................................................	15	0	10	0.10	1	0	0	0	1	0	0	0	0
..............................................................................................................................................................................TGAGTTTTTTAGTCGT............................................................	16	1	14	0.07	1	1	0	0	0	0	0	0	0
................................................................AGTGCGCCCGCGTTAGTTA.......................................................................................................................................................................	19	3	17	0.06	1	0	0	0	0	0	1	0	0
.....................................................................................................................................................GTCGGCGTTGTTGCAAAA...................................................................................	18	2	18	0.06	1	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................CGTCGCTAGGGATGAGC.......	17	2	19	0.05	1	0	0	0	0	0	1	0	0
............................................................................................................................................GTCGTTGTTGTCGTTGT.............................................................................................	17	0	20	0.05	1	0	0	0	1	0	0	0	0
..................................................................................................................................................................CAAAATCGAAGTTGA.........................................................................	15	1	20	0.05	1	0	0	0	1	0	0	0	0
.....................................................................CTCGGTGGTAGTTAGTTGT..................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1
.................................................................................................................................................................................GTTGGTTAGTCGTTG..........................................................	15	1	20	0.05	1	0	0	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:5191353-5191602 -	dsi_22174	TTGCATCCCCG---CAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------A------CAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAGCA------------------GCAGCAGCAGCAACAACAGC---AACAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCA-----------------------------------------------GCAACA------------GCAG---CAA---------TCCCTGCTCGATCTCAG
droSec2	scaffold_27:624375-624624 -	dse_1127	TTGCATCCCCG---CAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------A------CAACGCACACACACGCCCACAACCGCCGTATACTACCAACAGCA------------------GCAGCAGCAGCAACAACAGC---AACAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCA-----------------------------------------------GCAACA------------GCAG---CAA---------TCCCTGCTCGATCTCAG
dm3	chr3R:16114434-16114683 +		TTGCATCCCCG---CAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------A------CAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAGCA------------------GCAGCAGCAGCAACAACAGCAACAACAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATTT---ACAGGAACAACACCAGCAGCA--------------------------------------------------GCAACA------------GCAG---CAA---------TCCCTGCTCGATCTCAG
droEre2	scaffold_4770:5567333-5567594 -	der_557	TTGCATCCCCG---CAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------A------CAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAGCA------------------GCAGCAGCAGCTACAACAGC---AACAGCAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCAGCA---------------G--------CAGCCGCC------------GCAACA------------GCAG---CAA---------TCCCTGCTCGATCTCAG
droYak3	3R:4889670-4889913 +	dya_934	TTGCATCACCG---CAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------A------CAACGCACACACACGCCCACAACCGCCGTTCACTACCAACAGCA------------------ACAGCAGCAGCTACAACAGC---AACCACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACACCACCAGCA-----------------------------------------------------GCAACA------------GCAG---CAA---------TCCCTGCTCGATCTCAG
droEug1	scf7180000409804:2432803-2433037 +		TTGCATCCCCGCTGCAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------G------CAACGCACACAAACGCCCACAACCGCCGTCTACTACCATCAGCA------------------GCA---------------GCAACAGCAACAACGTTTTAGCTTTAA---TTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAG-----------------------------------------------------CA------------GCAG---CAA---------TCCCTGCTCGATCTCAG
droBia1	scf7180000302402:1901212-1901461 +		TTGCATCCCCGCTGCAACATGCG---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA---------------ACGCACACATACGCCCACAACCGCCGTCTACTACCAACAGCA------------------GCAGCA------------GC---AACCACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCAGCA---------------A--------CAGCAACA------------ACAGCA------------GCAG---CAA---------TCCCTGCTCGATCTCAG
droTak1	scf7180000415013:42279-42518 +		----------------ACATGCG---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA---------------ACGCACACACACGCCCACAACCGCCGTCTACTATCAACAGCA------------------GCAGCA------------GCAACAGCAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCAACA--------------------------GCCGCAA---CAGCA---ACACCA------------GCAG---CAA---------TCCCTGCTCGATCTCAG
droEle1	scf7180000491008:805677-805938 -		TTGCATCTCCGCTGCAACATGGC---------AGCGG---TAGTACTTACAAGCAACATGTAGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATTATTCATCA------G------CAACGCACACACACGCCCACAACCGCCGTCTACTACCCACAACA------------------GCAGCAGCA---------GCAACAACAACAACGTTTTAGCTTTAA---TTCAAACAATCAGCAACATGT---ACAGGAACAACAGCAGCACCTGCAACA--------------------------ACAACAA---CAGCA---GCAGCA------------GCCG---CAA---------TCCCTGCTCGATCTCAG
droRho1	scf7180000768020:63206-63434 -		TTGCATCCCCGCTGCAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGTCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATTAATCATCA------G------CAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAG---------------------------------------------CAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCA-----------------------------------------------ACAGCA------------GCAG---CAA---------TCCCTGCTCGATCTCAG
droFic1	scf7180000453213:6829-7072 +		TTGCATCCCCGCTGCAACATGCC---------AGCGT---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AA------------CGCAGCCACAATCAATCATCA------G------CAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAGCA------------------GCAGCAGCA---------GCAACAGCAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCAGCA--------------------------GC------------A---ACAACA------------GCAA---CAA---------TCCCTGCTCGATCTCAG
droKik1	scf7180000302650:33390-33657 +		TTGCATCCCCGCTGCAGCATACC---------AGCGG---TAGTACTTACAAGCAACATGTTGCAGGCATT---------------AGCAG---CAGCAGC---AACAATAGT---CACGCAGCCACAATCAATCATCA------G------CAACGCACACACACGCCCACAACTGCCGTCTACTACCAACAACAACAACAA---CA------GCAGCAGCA---------TCAACAGCAACCACGTTTTAGCTTTAA---CTCACACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCA-----------------------------------------------GCAGCA------------GCAG---CAA---------TCCCTGCTCGATCTCAG
droAna3	scaffold_13340:2650034-2650280 +		TTGCATCCCCACTGCAACATGGGAGCAGTGGCAGTGG---CAGTACTTACAAGCAACATGTTGCAGCCAGC---------------AGCAG---TAGC------AACAATAGTAGCCATGCACCAACAATAAATCATCA------G------CAACGCACACACACGCCCACAACGGCAGTTTACTATCCACAACA------------------ACAACA------------GCAACAACAACAACGTTTTAGCTTTAA---TTCACACAATCAGCAACATGT---ACAGGAGCAACATCA-----------------------------------------------------------------------------G---CAA---------TCCTTGCTCGATCTCAG
droBip1	scf7180000396712:1689034-1689283 -		TTGCATCCCCACTGCAACATAGC---------AGCAGTGGCAGTACTTACAAGCAACATGTTGCAGTTAGC---------------------------------AGCAATAGC---AAC---------ATTAATCATCA------ACAGCAACAACGTACGCACACGCCCACCACGGCCATTCACTATCAACAGCAACACCAAACTCA------GCAACAGCA---------GCAACAACAACAACGTTTTAGCTTTAA---CTCCCACAATCAGCAACATCCGCAACAGGAACAACA-----------------------------------------------------------ACAACA------------ACAG---CAA---------TCCTTGCTCGATCTCAG
dp5	2:27572514-27572805 -		TTGCATCCCCGCTGCAACATGCC---------GGCGGTAGTAGTACTTACAAGCAACATGTGGCATGCAGC---------------AGCAG---CAGCAGCAATAACAATGGC---CATGCGGCAACAATCAATCATCA------G------CAACGCACACACACGCCCACAACGGCTGTCTACTACCAACAGCA------------------GCAACAGCA---------ACAGCAGCAGCAGCGTTTTATCTTTAA---CTCTCACAATCAGCAACATGT---ACAGGAGCAACATCCACAGCCGCAACAG---CA---------G-----CAGCAGCCGCAG---CAGCAGCAGCAAGA------------ACAA---CAA---------TCCTTACTCGATCTCAG
droPer2	scaffold_6:2893140-2893428 -		TTGCATCCCCGCTGCAACATGCC---------GGCGGTAGTAGTACTTACAAGCAACATGTGGCATGCAGC---------------AGCAG---CAGCAGCAATAACAATGGC---CATGCGGCAACAATCAATCATCA------G------CAACGCACACACACGCCCACAACGGCTGTCTACTACCAACAGCA------------------GCAGCAACAGCAACAGCAGC---AGCAGCAGCGTTTTATCTTTAA---CTCTCACAATCAGCAACATGT---ACAGGAGCAACATCCACAGCCGCAACAG-----------------------CAGCCGCAG---CAGCA---GCAGCA------------ACAA---CAA---------TCCTTACTCGATCTCAG
droWil2	scf2_1100000004902:10728412-10728709 -		TTGCTTCGCCGCAGCAACATGCC---------TCC------AGTACTTACAAACAACA------CAGCAGCAGCAATAGCAGCAGCAGCAA---CAGCAGTACTAGCAGCAGC-----AGCAACAACAATCA-CCATCA------A------CAACGCACACATACACCAACATCAACTGTTTACTATCAACAACC---A------CA------GCAGCAGCA---------GCAACCGCAGCAACGTTTTAGCTTTAACAACTCAAACAATCAGCAACATCT---ACAGGAACAGCAACAACAACTGCATCC---------------ACATCA-----AC---AACAACAGCA---GCAACA---GCCGCCGCCGCCG---CAG---------TCT---CTTGATCTCAG
droVir3	scaffold_13047:2587789-2588080 -		TCGCTTCGCCGCTGCAACATGCG---------A---C---TAGTACTTACAAGCAACATGTTGCCAGCAGC---------------AGCAA---CAATAGCAACATCAACAAT---CATGCAGC---AATCAATCATTC------G---------CGCACACACACGCC---------CGTCTACTACCAGCAATC------------------CCAGCAGCA---------ACAGCAGCAACCACGTTTTAGCTTTAA---CTCACACCATCAGCAACATGT---ACAGGAACAACAACAACAACAGCAACAGACGCAGTTGCAGTTGCAGCA-----ACAGCAA---CAGCA---ACAACA------------GCAGCAACACGAGCCTGTTGCTCTACTCGATCTCAG
droMoj3	scaffold_6359:3223482-3223692 +		TTGCAAATGCA------CTTG-C------AGCAGCAG---CAGCTATTACAA-CAACA-GTTGCA-GCAGC------------------AGCAGCAAC---AACAACAACAC--------CAACAACAGCCA--CA---------GCAA---CAA------------------------------CACCAACAGCAACAG------CA------GCAGCAGCAGCTATTGC------AGCAAC---------------------------------AACAGTT---GCAGCAGCAACAACAACAGCTACATCAG---CA---------A-----CATCAAC---AACACCAGCAGCTACATCA------------GCAA---CAA---------ATGCTGC----------
droGri2	scaffold_15203:1310380-1310608 -		ACA-------ACAGCAACAA--C------AACAGCAA---CAACAACTGCA-ACAACA-ACTGCA-ACAAC------------------AACTGCAAC------AACAAGAG--------CAACAACAA-----CATCAACAACAACAG---CA----------------ACAACAACAG--------------CAACAA------CAACAGCAACAACAACAGCAACAA---CAACAGCAACAACAA--CAGCAACAA---CACCAACAAT-ATCAACATCA---ACAACAACAGCACAAACAACAGCA-----------------------------------------------ACAACAACTGCAACAACAAGAG--------------------------CAGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TTGCATCCCCG---CAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------A------CAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAGCA------------------GCAGCAGCAGCAACAACAGC---AACAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCA-----------------------------------------------GCAACA------------GCAG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............AACATGCC---------AGCGG---TA.................................................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................CAAGCAACATGTTGCCAGCGGC---------------------------------...................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................AACAACGTTTTAGCTTTAA---CTCAAACA.............................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAACAGC---AACAACAACGT...................................................................................................................................................................	18	3	1.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AGT---CACGCAGCCACAATCAATCATC.................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................TACAAGCAACATGTTGCCAGCGGC---------------------------------A..................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GCAGCAGCAACAACAGC---AACAACA.......................................................................................................................................................................	24	4	0.75	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................ACAACACCAGCAGCA........................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

TTGCATCCCCG---CAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------A------CAACGCACACACACGCCCACAACCGCCGTATACTACCAACAGCA------------------GCAGCAGCAGCAACAACAGC---AACAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCA-----------------------------------------------GCAACA------------GCAG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................AGTACTTACAAGCAACATGTT.............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
................................................................................................................................................................ACACACGCCCACAACCGCCGT......................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
...................................................AGCAACATGTTGCCAGCGGC---------------------------------...................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................AACACCAGCAGCAGCA-----------------------------------------------GCAACA------------GC..................................	24	5	0.20	1	0	0	1	0

dm3

TTGCATCCCCG---CAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------A------CAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAGCA------------------GCAGCAGCAGCAACAACAGCAACAACAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATTT---ACAGGAACAACACCAGCAGCA--------------------------------------------------GCAACA------------GCAG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................TTT---ACAGGAACAACACCAGCAGCA--------------------------------------------------GC....................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................ACAGGAACAACACCAGCAGCA--------------------------------------------------GC....................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACCGCCGTCTACTACCAACA..........................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TTT---ACAGGAACAACACCAGCAGCA--------------------------------------------------GCA...................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................ACGTTTTAGCTTTAA---CTCAAACA.............................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................CAACCGCCGTCTACTACCAAC...........................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................ACAACAACGTTTTAGCTTTAA---CTCA.................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................CCAGCAGCA--------------------------------------------------GCAACA------------GCAG---C............................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CAGCAGCAGCAACAACAGCAACA.............................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGCAACAACAGCAACAACAACA.......................................................................................................................................................................	22	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGCAGCAACAACAGCAACA.............................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AGCA------------------GCAGCAGCAGCAACA......................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AACAACACCAGCAGCA--------------------------------------------------GCA...................................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ACAGCA------------------GCAGCAGCAGCAACAACAGC.................................................................................................................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTGCATCCCCG---CAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------A------CAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAGCA------------------GCAGCAGCAGCTACAACAGC---AACAGCAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCAGCA---------------G--------CAGCCGCC------------GCAACA------------GCAG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................TACAACAGC---AACAGCAACGTTTTAT..............................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................CGTTTTAGCTTTAA---CTCAAACAAT...........................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..........G---CAACATGCC---------AGCGG---TAGTA..............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.........................................AGTACTTACAAGCAACATGTTGCC..........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
TTGCATCCCCG---CAACATGCC---------AGCGG---...................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................AACCGCCGTCTACTACCAACAGCA------------------GCAG.................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................AACACCAGCAGCAGCAGCA---------------G--------CAGCC.....................................................................	25	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GT---ACAGGAACAACACCAGCAGCAGCAGC...................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................AGT---CACGCAGCCACAATCAAT.....................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CAGGAACAACACCAGCAGCAGCAGC...................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................T---ACAGGAACAACACCAGCAGCAGCAGC...................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................CGCCGTCTACTACCAACAGC........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
................................................ACAAGCAACATGTTGCCAGCGGC---------------------------------...................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................TACAACAGC---AACAGCAACGTT..................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................GCA---------------G--------CAGCCGCC------------GCAACA------------GC..................................	20	3	0.33	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................A---------------G--------CAGCCGCC------------GCAACA------------GC..................................	18	3	0.33	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................ACAACACCAGCAGCAGCAGC...................................................................................................	20	6	0.17	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................ACACCAGCAGCAGCAGCA---------------G--------C.........................................................................	20	20	0.05	1	0	1	0	0	0	0	0

droYak3

TTGCATCACCG---CAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------A------CAACGCACACACACGCCCACAACCGCCGTTCACTACCAACAGCA------------------ACAGCAGCAGCTACAACAGC---AACCACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACACCACCAGCA-----------------------------------------------------GCAACA------------GCAG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................AGGAACACCACCAGCA-----------------------------------------------------GCAACA------------GC..................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GT---ACAGGAACACCACCAGCA-----------------------------------------------------GCAACA------------....................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................CGCCCACAACCGCCGTTCAC..................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................AGCGG---TAGTACTTACAAGC.....................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CTACCAACAGCA------------------ACAGCAGCAGCTAC.......................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TACCAACAGCA------------------ACAGCAGCAGCTAC.......................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................CCAACAGCA------------------ACAGCAGCAGC..........................................................................................................................................................................................	20	11	0.18	2	0	0	1	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ACCAGCA-----------------------------------------------------GCAACA------------GCAG---CA...........................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TTGCATCCCCGCTGCAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA------G------CAACGCACACAAACGCCCACAACCGCCGTCTACTACCATCAGCA------------------GCA---------------GCAACAGCAACAACGTTTTAGCTTTAA---TTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAG-----------------------------------------------------CA------------GCAG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTGCATCCCCGCTGCAACATGCG---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA---------------ACGCACACATACGCCCACAACCGCCGTCTACTACCAACAGCA------------------GCAGCA------------GC---AACCACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCAGCA---------------A--------CAGCAACA------------ACAGCA------------GCAG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

----------------ACATGCG---------AGCGG---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATCAATCATCA---------------ACGCACACACACGCCCACAACCGCCGTCTACTATCAACAGCA------------------GCAGCA------------GCAACAGCAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCAACA--------------------------GCCGCAA---CAGCA---ACACCA------------GCAG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTGCATCTCCGCTGCAACATGGC---------AGCGG---TAGTACTTACAAGCAACATGTAGCCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATTATTCATCA------G------CAACGCACACACACGCCCACAACCGCCGTCTACTACCCACAACA------------------GCAGCAGCA---------GCAACAACAACAACGTTTTAGCTTTAA---TTCAAACAATCAGCAACATGT---ACAGGAACAACAGCAGCACCTGCAACA--------------------------ACAACAA---CAGCA---GCAGCA------------GCCG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTGCATCCCCGCTGCAACATGCC---------AGCGG---TAGTACTTACAAGCAACATGTTGTCAGCGGC---------------------------------AACAATAGT---CACGCAGCCACAATTAATCATCA------G------CAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAG---------------------------------------------CAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCA-----------------------------------------------ACAGCA------------GCAG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTGCATCCCCGCTGCAACATGCC---------AGCGT---TAGTACTTACAAGCAACATGTTGCCAGCGGC---------------------------------AA------------CGCAGCCACAATCAATCATCA------G------CAACGCACACACACGCCCACAACCGCCGTCTACTACCAACAGCA------------------GCAGCAGCA---------GCAACAGCAACAACGTTTTAGCTTTAA---CTCAAACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCAGCA--------------------------GC------------A---ACAACA------------GCAA---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGCATCCCCGCTGCAGCATACC---------AGCGG---TAGTACTTACAAGCAACATGTTGCAGGCATT---------------AGCAG---CAGCAGC---AACAATAGT---CACGCAGCCACAATCAATCATCA------G------CAACGCACACACACGCCCACAACTGCCGTCTACTACCAACAACAACAACAA---CA------GCAGCAGCA---------TCAACAGCAACCACGTTTTAGCTTTAA---CTCACACAATCAGCAACATGT---ACAGGAACAACACCAGCAGCAGCA-----------------------------------------------GCAGCA------------GCAG---CAA---------TCCCTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTGCATCCCCACTGCAACATGGGAGCAGTGGCAGTGG---CAGTACTTACAAGCAACATGTTGCAGCCAGC---------------AGCAG---TAGC------AACAATAGTAGCCATGCACCAACAATAAATCATCA------G------CAACGCACACACACGCCCACAACGGCAGTTTACTATCCACAACA------------------ACAACA------------GCAACAACAACAACGTTTTAGCTTTAA---TTCACACAATCAGCAACATGT---ACAGGAGCAACATCA-----------------------------------------------------------------------------G---CAA---------TCCTTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................................................................AACATCA-----------------------------------------------------------------------------G---CAA---------TCCTTGCTC........	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................CACAATCAGCAACATGT---ACAG.........................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..GCATCCCCACTGCAACATGGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................G------CAACGCACACACACGCCC.................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................TAGCTTTAA---TTCACACAATC..........................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................CAGCAACATGT---ACAGGAGC.....................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..................ATGGGAGCAGTGGCAGTGG---CAGTAC.............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AACATGT---ACAGGAGCAACATC...............................................................................................................	21	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................GCACACACACGCCCACAAC............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................GCACCAACAATAAATCATCA------G------CA.................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................GC---------------AGCAG---TAGC------AACAATAGT..........................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................ATCAGCAACATGT---ACAGG........................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................CA------------------ACAACA------------GCAACAACAACAAC.....................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0

droBip1

TTGCATCCCCACTGCAACATAGC---------AGCAGTGGCAGTACTTACAAGCAACATGTTGCAGTTAGC---------------------------------AGCAATAGC---AAC---------ATTAATCATCA------ACAGCAACAACGTACGCACACGCCCACCACGGCCATTCACTATCAACAGCAACACCAAACTCA------GCAACAGCA---------GCAACAACAACAACGTTTTAGCTTTAA---CTCCCACAATCAGCAACATCCGCAACAGGAACAACA-----------------------------------------------------------ACAACA------------ACAG---CAA---------TCCTTGCTCGATCTCAG	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTGCATCCCCGCTGCAACATGCC---------GGCGGTAGTAGTACTTACAAGCAACATGTGGCATGCAGC---------------AGCAG---CAGCAGCAATAACAATGGC---CATGCGGCAACAATCAATCATCA------G------CAACGCACACACACGCCCACAACGGCTGTCTACTACCAACAGCA------------------GCAACAGCA---------ACAGCAGCAGCAGCGTTTTATCTTTAA---CTCTCACAATCAGCAACATGT---ACAGGAGCAACATCCACAGCCGCAACAG---CA---------G-----CAGCAGCCGCAG---CAGCAGCAGCAAGA------------ACAA---CAA---------TCCTTACTCGATCTCAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................AGCAACATGT---ACAGGAGCAACA.................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...CATCCCCGCTGCAACATGCC---------...........................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................A------------ACAA---CAA---------TCCTTACTCGATC....	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................GGCGGTAGTAGTACTTACAAGC.....................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................GTACTTACAAGCAACATGTGGC...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................GCAGCAATAACAATGGC---CATGCGGC...............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................CAATGGC---CATGCGGCAACAATC........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................G------CAACGCACACACACGCCCAC...............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................AGTACTTACAAGCAACATGTGGC...........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................TTACAAGCAACATGTGGCAT.........................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACAG---CA---------G-----CAGCAGCCGCAG---CA............................................................	22	7	0.14	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................CCAACAGCA------------------GCAACAGCA---------AC.................................................................................................................................................................................	20	14	0.07	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CA---------G-----CAGCAGCCGCAG---CAGCAGCAGC....................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CAGCAGCCGCAG---CAGCAGC.......................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ACAGCA------------------GCAACAGCA---------ACAGCAGC...........................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

TTGCATCCCCGCTGCAACATGCC---------GGCGGTAGTAGTACTTACAAGCAACATGTGGCATGCAGC---------------AGCAG---CAGCAGCAATAACAATGGC---CATGCGGCAACAATCAATCATCA------G------CAACGCACACACACGCCCACAACGGCTGTCTACTACCAACAGCA------------------GCAGCAACAGCAACAGCAGC---AGCAGCAGCGTTTTATCTTTAA---CTCTCACAATCAGCAACATGT---ACAGGAGCAACATCCACAGCCGCAACAG-----------------------CAGCCGCAG---CAGCA---GCAGCA------------ACAA---CAA---------TCCTTACTCGATCTCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................CTCACAATCAGCAACATGT---ACAGGAGC.....................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................AACAG-----------------------CAGCCGCAG---CAGC..........................................................	18	17	0.06	1	0	1	0	0	0	0
............................................................................................................................................................................................CAACAGCA------------------GCAGCAACAGC..........................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0

droWil2

TTGCTTCGCCGCAGCAACATGCC---------TCC------AGTACTTACAAACAACA------CAGCAGCAGCAATAGCAGCAGCAGCAA---CAGCAGTACTAGCAGCAGC-----AGCAACAACAATCA-CCATCA------A------CAACGCACACATACACCAACATCAACTGTTTACTATCAACAACC---A------CA------GCAGCAGCA---------GCAACCGCAGCAACGTTTTAGCTTTAACAACTCAAACAATCAGCAACATCT---ACAGGAACAGCAACAACAACTGCATCC---------------ACATCA-----AC---AACAACAGCA---GCAACA---GCCGCCGCCGCCG---CAG---------TCT---CTTGATCTCAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................ATCAACAACC---A------CA------GCAGCAGC.............................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
....................................................................................................................................................................................TTTACTATCAACAACC---A------CA------GCAGCAGC.............................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................AGCAACATCT---ACAGGAACAG...................................................................................................................	20	1	1.00	1	0	0	0	1	0
............................................ACTTACAAACAACA------CAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..........................................................................AATAGCAGCAGCAGCAA---CAGCAGT......................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...................................................................................AGCAGCAA---CAGCAGTACTAGCAGCA............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................CAGGAACAGCAACAACAACTGC......................................................................................................	22	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................GCAACCGCAGCAACGTTTT................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.................................................................................GCAGCAGCAA---CAGCAGTACTAGCAGCA............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................AACCGCAGCAACGTTTTA...............................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................AATCAGCAACATCT---ACAGGAA......................................................................................................................	21	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................C---A------CA------GCAGCAGCA---------GCAACCG............................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0
............................................................................................................................................................................................CAACAACC---A------CA------GCAGCAGCA---------GC.................................................................................................................................................................................	22	5	0.20	1	0	0	0	1	0
.............................................................................................................................................................................................AACAACC---A------CA------GCAGCAGCA---------GCA................................................................................................................................................................................	22	5	0.20	1	0	0	0	1	0
...............................................................................................................................................................................................CAACC---A------CA------GCAGCAGCA---------GC.................................................................................................................................................................................	19	8	0.13	1	0	0	0	1	0
................................................................................................................................................................................................AACC---A------CA------GCAGCAGCA---------GCA................................................................................................................................................................................	19	13	0.08	1	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................CATCA-----AC---AACAACAGCA---GC....................................................	19	20	0.05	1	0	1	0	0	0
.................................................................AGCAGCAGCAATAGCAGCA.......................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0

droVir3

TCGCTTCGCCGCTGCAACATGCG---------A---C---TAGTACTTACAAGCAACATGTTGCCAGCAGC---------------AGCAA---CAATAGCAACATCAACAAT---CATGCAGC---AATCAATCATTC------G---------CGCACACACACGCC---------CGTCTACTACCAGCAATC------------------CCAGCAGCA---------ACAGCAGCAACCACGTTTTAGCTTTAA---CTCACACCATCAGCAACATGT---ACAGGAACAACAACAACAACAGCAACAGACGCAGTTGCAGTTGCAGCA-----ACAGCAA---CAGCA---ACAACA------------GCAGCAACACGAGCCTGTTGCTCTACTCGATCTCAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................ATAGCAACATCAACAAT---CATGCAGC---A...........................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................ACCATCAGCAACATGT---ACAGGAA......................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................C---TAGTACTTACAAGCAACATGTT.............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................ACACCATCAGCAACATGT---ACAG.........................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AACACGAGCCTGTTGCTCTACTC........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................A------------GCAGCAACACGAGCCTGTT.................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TACTTACAAGCAACATGTT.............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................ATCAGCAACATGT---ACAGGAACAACA.................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GCAACACGAGCCTGTTGCTCTACT.........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................C---TAGTACTTACAAGCAACATGTTGCCA.........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CACCATCAGCAACATGT---AC...........................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................AAT---CATGCAGC---AATCAATCA...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GC---------------AGCAA---CAATAGCAACAT.................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................ACACGCC---------CGTCTACTACCAGCAATC------------------CC...................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................ATCAGCAACATGT---ACAGGA.......................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CTACTACCAGCAATC------------------CCAGCAGCA---------AC.................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACACGAGCCTGT..................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AGCAACATGTTGCCAGCAGC---------------A....................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTGCAGCA-----ACAGCAA---CAGC..........................................................	19	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AA---CAGCA---ACAACA------------GCAGCA..............................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCAGCA-----ACAGCAA---CAGCA---ACAACA------------....................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GAACAACAACAACAACAGCAACA..................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................TGCAGCA-----ACAGCAA---CAGCA---......................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GCA-----ACAGCAA---CAGCA---ACAACA------------GC..................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCAA---CAGCA---ACAACA------------GCAGCAAC............................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................GCAGCA-----ACAGCAA---CAGCA---ACAAC.................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AACAACAACAGCAACAGA................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCAA---CAGCA---ACAACA------------GCAGC...............................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAGCA-----ACAGCAA---CAGCA---ACAACA------------GC..................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droMoj3

TTGCAAATGCA------CTTG-C------AGCAGCAG---CAGCTATTACAA-CAACA-GTTGCA-GCAGC------------------AGCAGCAAC---AACAACAACAC--------CAACAACAGCCA--CA---------GCAA---CAA------------------------------CACCAACAGCAACAG------CA------GCAGCAGCAGCTATTGC------AGCAAC---------------------------------AACAGTT---GCAGCAGCAACAACAACAGCTACATCAG---CA---------A-----CATCAAC---AACACCAGCAGCTACATCA------------GCAA---CAA---------ATGCTGC----------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................................................................................................CAACAACAGCTACATCAG---C.............................................................................................	19	2	3.50	7	6	0	0	0	1	0
..................................................................................................................................................................................................................................ATTGC------AGCAAC---------------------------------AACAGTT---.............................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................AACAACAGCTACATCAG---C.............................................................................................	18	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................CAA------------------------------CACCAACAGCAACAG------CA------GCAGCAGC.............................................................................................................................................................................................	28	2	0.50	1	1	0	0	0	0	0
..........................................................................................GCAGCAAC---AACAACAACAC--------C..................................................................................................................................................................................................................................................................................................	20	16	0.13	2	1	0	0	0	1	0
.................................................................................................C---AACAACAACAC--------CAACAACAGC.........................................................................................................................................................................................................................................................................................	22	16	0.06	1	0	0	0	0	1	0
..........................................................................................GCAGCAAC---AACAACAACAC--------...................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................AA---CAA------------------------------CACCAACAGCAACA....................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.......................................................................................................CAACAACAC--------CAACAACAGC.........................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0

droGri2

ACA-------ACAGCAACAA--C------AACAGCAA---CAACAACTGCA-ACAACA-ACTGCA-ACAAC------------------AACTGCAAC------AACAAGAG--------CAACAACAA-----CATCAACAACAACAG---CA----------------ACAACAACAG--------------CAACAA------CAACAGCAACAACAACAGCAACAA---CAACAGCAACAACAA--CAGCAACAA---CACCAACAAT-ATCAACATCA---ACAACAACAGCACAAACAACAGCA-----------------------------------------------ACAACAACTGCAACAACAAGAG--------------------------CAGCAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................CAAC------AACAAGAG--------CAACAACA...........................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0

dsi_22174

3r:5191403-5191552 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.1	-4.1	-4.0