ID:

dsi_22173

 Coordinate:

3l:11413811-11413960 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.3 -21.1 -20.9

Flybase annnotation

CDS [3l_11413554_11413810_-]; exon [3l_11413184_11413810_-]; intron [3l_11413811_11415989_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACTAAACTTAAGAGTCTTGACCCTGCCAAACTGGAAACAGATATTACATTTTGATTGTTTCCGTACAACAGGAAAATTCATAACATAAGTGGTTTTTTATTATGGCAAGTAGTGTGTTTATAGCTTAGTTCGGAAATATAGGAGAAAATTGCCTCATTCCTCTGTACTCATTTGCCTTTCTTCTTTCTATTTCTTGCAGCCCATCCTGGCAAGTGCTTCGACAAGCTGACCCGCAAGGCCCTGCTGCCC
**************************************************..(((...(((((........)))))..))).(((.(((((.......((((((.....))))))........)))))))).(((((((.((((((((...((.....................)).))))))))...))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
.................................................................................................................................................................................TTTCTTCTTTCTATTTCTTGCAG.................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................................................................................................................CTTCGACAAGCTGACCCG................ 18 0 1 1.00 1 0 1 0 0 0 0 0
....................................................TGTTTGGTTCCGTACAAGAGG................................................................................................................................................................................. 21 3 3 0.67 2 0 0 0 2 0 0 0
..................................................................................................................................TCGGACATAGAGGAGAAA...................................................................................................... 18 2 3 0.67 2 0 0 2 0 0 0 0
........................................................................................................................ATAGCTTTGTTCGGAA.................................................................................................................. 16 1 4 0.25 1 0 0 0 0 1 0 0
.................................................................................................................................TAAGGAAATATAGGAGA........................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1
..................................................................................................................................TCGGACATAGGGGAGAAAA..................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0
.......GTTAAGATTCCTGACCCT................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0
..........................................................................................................CAAGTAGTCTGTTTAGCG.............................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

GTGATTTGAATTCTCAGAACTGGGACGGTTTGACCTTTGTCTATAATGTAAAACTAACAAAGGCATGTTGTCCTTTTAAGTATTGTATTCACCAAAAAATAATACCGTTCATCACACAAATATCGAATCAAGCCTTTATATCCTCTTTTAACGGAGTAAGGAGACATGAGTAAACGGAAAGAAGAAAGATAAAGAACGTCGGGTAGGACCGTTCACGAAGCTGTTCGACTGGGCGTTCCGGGACGACGGG
**************************************************..(((...(((((........)))))..))).(((.(((((.......((((((.....))))))........)))))))).(((((((.((((((((...((.....................)).))))))))...))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
........................................................AAAAAGGCAGGTTGTCATT............................................................................................................................................................................... 19 3 20 0.65 13 10 0 1 2 0 0 0 0
.......................................................AAAAAAGGCAGGTTGTCATT............................................................................................................................................................................... 20 3 14 0.57 8 8 0 0 0 0 0 0 0
...........CCTCAGAACTGGGTCGGTTAG.......................................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0
...................................................AACTAACAAAGGCAT........................................................................................................................................................................................ 15 0 2 0.50 1 0 0 1 0 0 0 0 0
...........................................................................................................................................ATCCTGTTTTAACGGGGTAACG......................................................................................... 22 3 3 0.33 1 0 0 0 0 1 0 0 0
............CTCAGAACTTGGTCGGTT............................................................................................................................................................................................................................ 18 2 3 0.33 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................GTAAGTGGAAAGAAGAAAGGTA........................................................... 22 3 4 0.25 1 0 0 0 0 0 1 0 0
...............................................................................................................................................TCTTTTAATCGAGTAGGGAG....................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0 0 0
............CTCAGAACTTGGTCGGTTAG.......................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 1
........AATTCTCAGAGCTGG................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 1 0
..................................CTTGGTCTATGATGTGAAACT................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................GCTGTACGACTAGGCGTT............. 18 2 10 0.10 1 0 0 0 0 0 0 1 0
...........CCTCAGAACTTGGTCGGTT............................................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0

Generated: 04/24/2015 at 06:26 AM