ID:dsi_2217 |
Coordinate:3l:7468887-7469036 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
intergenic
No Repeatable elements found
|
GATCGCGCACGCACTTCGTCCGGCGGAGCTGTATCTCTGCATCAAATTGGGTAAGTGGGTCGACCGGGATCGGGATCGGAGTGCTCTGGCCCTTCTTATAACTATGATTATGGCAGGCACACGAGTCCGCAACCAACAATCAATATAATCGATCACTTACGACCGTCTAGGGCTCGCTTGTGCAATTTAAATGCTCTAGAATGGAAGCAAGAGCAGGAGAGCAGTAAAGCAAGCAGGTTTCTAGGTATCT
**************************************************((((((((.((((..((...((((.(((..((((.(((.((....((((....))))....))))))))).))).))))...))..............)))))))))))).....((((((((...................))))))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
SRR553485 Chicharo_3 day-old ovaries |
GSM343915 embryo |
SRR618934 dsim w501 ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|
| .ATCGCGCACGCACTTCGTCCGGC.................................................................................................................................................................................................................................. | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...............................TATCTCTGCATCAAATTGGA....................................................................................................................................................................................................... | 20 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ........................................................................................................TGATTATGCCGGGCACACGTGTC........................................................................................................................... | 23 | 3 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................................................................TAGATCACTCACGACTGTC................................................................................... | 19 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 |
| ................................................................................................................................................................GACCATCTAGGGCTC........................................................................... | 15 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 |
| ...........................................AAATTGGCTAAGTGG................................................................................................................................................................................................ | 15 | 1 | 20 | 0.15 | 3 | 0 | 0 | 0 | 0 | 3 |
| .....................TGCGGAACTGTATCTCT.................................................................................................................................................................................................................... | 17 | 2 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 |
| ........ACGCACGTCGTCGGACGG................................................................................................................................................................................................................................ | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 |
|
CTAGCGCGTGCGTGAAGCAGGCCGCCTCGACATAGAGACGTAGTTTAACCCATTCACCCAGCTGGCCCTAGCCCTAGCCTCACGAGACCGGGAAGAATATTGATACTAATACCGTCCGTGTGCTCAGGCGTTGGTTGTTAGTTATATTAGCTAGTGAATGCTGGCAGATCCCGAGCGAACACGTTAAATTTACGAGATCTTACCTTCGTTCTCGTCCTCTCGTCATTTCGTTCGTCCAAAGATCCATAGA
**************************************************((((((((.((((..((...((((.(((..((((.(((.((....((((....))))....))))))))).))).))))...))..............)))))))))))).....((((((((...................))))))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M024 male body |
O002 Head |
SRR553488 RT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................CCCAGCTGGCCCTAGCCCTAGCC........................................................................................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..................................................................................................................TCGGAGTGCTCAAGCGTTG..................................................................................................................... | 19 | 3 | 3 | 1.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| .......................................................ACCCAGCTGGCGCTA.................................................................................................................................................................................... | 15 | 1 | 3 | 0.67 | 2 | 0 | 0 | 2 | 0 | 0 | 0 |
| .......................................................ACCGAGCTGGCCCTA.................................................................................................................................................................................... | 15 | 1 | 4 | 0.50 | 2 | 0 | 0 | 0 | 2 | 0 | 0 |
| ...........................................................................................................................TCATGCGTTGGTTGTT............................................................................................................... | 16 | 1 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .............................................................................................................................................TTATAATAGCTAGTGA............................................................................................. | 16 | 1 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..................................................................................................................TCCGAGTGCTGAAGCGTTG..................................................................................................................... | 19 | 3 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................CGTTCGTGGTTAGTTATGTT...................................................................................................... | 20 | 3 | 14 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................CGTTCGTGGTTAGTTATAG....................................................................................................... | 19 | 3 | 19 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .................CAGGCCTCCTTGATATAG....................................................................................................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...............................................................................TCACGAGACAGGGACG........................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
Generated: 04/24/2015 at 09:55 AM