ID:

dsi_22157

 Coordinate:

2r:4810025-4810174 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.2 -17.9 -17.9

Flybase annnotation

five_prime_UTR [2r_4810175_4810180_+]; CDS [2r_4810181_4811092_+]; exon [2r_4810175_4811092_+]; intron [2r_4809465_4810174_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTCTGGGAGGCGTGCCAGAAACCGATCAGCTGGCACTGTGTTCTTTTTAGAATCAAATTTCTAGATTTTCCCACGGCCTTATCAATATACAAACGAAAAGGAATTGCATCGAAGAAAATTCGATCAGCTGCGGTCTTATCGAGTCTTTATCAGTGACTTTGAACACACTACTAATAGCTTCTGGTTTTGTTGTTTTTAGTGATTCGTGGTCATGTCGGAAGACAGCAACAATGCCTACTGCCAGGCGGT
***************************************************.............(((....((.(((((((.((...........)).))))..(((.((((((.....)))))))))))).))....)))((((..(((..((((..........))))..)))..))))..******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 GSM343915
embryo
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................................................GATTCGTGGTCATGTCGGAAGACAGCA...................... 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.....................ACCGATCAGCTGGCACTG................................................................................................................................................................................................................... 18 0 1 3.00 3 0 2 0 1 0 0 0 0 0
................................................................................................................................................................................................................GGTCATGTCGGAAGACAGCAACAATGC............... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................AACACACTACTAATAGCTTCT................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................................................................................GAAGAAAATTCGATCAGCTGT...................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................GATTCGTGGTCATGTCGGAAGACAGCAAC.................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................AATCAAATTTCTAGATTT..................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................TATCCGAGACTTTGAACAC................................................................................... 19 2 7 0.29 2 0 0 0 0 0 0 0 2 0
...........................................................................................................................................................................................................TTCGTGGTCTAGTCGG............................... 16 2 20 0.15 3 0 0 0 0 0 0 0 3 0
............................................................................................................CTCGACGAAAATTCGATC............................................................................................................................ 18 2 7 0.14 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................TTCGATAAGCTGCGG.................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................GTGGTCATGGCGGAA............................. 15 1 13 0.08 1 0 0 0 0 0 0 0 0 1
...........................................................TTCTGGATTATCCCGCGGC............................................................................................................................................................................ 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................TTAGTGATCCGGGGTC...................................... 16 2 16 0.06 1 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................CTTAGTGATCCGTGGTCT..................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.............................................................................................................................................GACTCTTAATCAGTGA............................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.......................................................................................ATACAATCTAAAAGGATTTG............................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACAGACCCTCCGCACGGTCTTTGGCTAGTCGACCGTGACACAAGAAAAATCTTAGTTTAAAGATCTAAAAGGGTGCCGGAATAGTTATATGTTTGCTTTTCCTTAACGTAGCTTCTTTTAAGCTAGTCGACGCCAGAATAGCTCAGAAATAGTCACTGAAACTTGTGTGATGATTATCGAAGACCAAAACAACAAAAATCACTAAGCACCAGTACAGCCTTCTGTCGTTGTTACGGATGACGGTCCGCCA
*******************************************************************.............(((....((.(((((((.((...........)).))))..(((.((((((.....)))))))))))).))....)))((((..(((..((((..........))))..)))..))))..*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
.................................................................................................................................................................CTTGTGTTAGGATTTTCGAAGAC.................................................................. 23 3 1 2.00 2 0 1 0 1 0 0 0
....................................................................AAGGGTGCCGGAATAGTTATA................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................TTGCTTTTCCTTAAC............................................................................................................................................... 15 0 2 1.00 2 2 0 0 0 0 0 0
...................................................................AAAGGGTGTCGGAATA....................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 1 0 0
......................................................................................................................................AGAATAGTTCAGAAA..................................................................................................... 15 1 20 0.45 9 9 0 0 0 0 0 0
................................................................................................................................................................................................................................TCGTGGATACGGATGAC......... 17 2 7 0.14 1 0 0 0 0 0 1 0
....................................................................................................................................CCAGAAAAGCTCAAAAAT.................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 1
....................................................................AAGGGTGTCGGAATAAT..................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 1 0 0
....................TTTGCTAGTCGACCGTCAT................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1
...................................................................AGAGGGTGCCGGAATT....................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0

Generated: 04/23/2015 at 05:26 AM