ID:

dsi_22141

 Coordinate:

3l:18921305-18921454 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.8 -17.8 -17.4 -17.4

Flybase annnotation

exon [3l_18921455_18921515_-]; five_prime_UTR [3l_18921455_18921515_-]; intron [3l_18921061_18921454_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GACTTGCGACTCGGCCAGTCAGTCGTTCCATCGATCCGGACACCTACCAAGTGAGTACCTTCTAGTGGAGATGCTATCAGTGGATCCGCTCTGCTGGGGATCTGAAAACAAAACTTTCCAGCCAGCAACCAGAGAACAGACGGTGCTGTTATCGCTCGATAAGAGTGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCACGTTCTCCTCCGCCAGAACAACAATTCTCCATAGAAATAACCCTGG
**********************************************************************((.........((..(((((((((((((((................)))..))))))....)))......)))..))))***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 O001
Testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..........................TCCATCGATCCGGACACC.............................................................................................................................................................................................................. 18 0 1 7.00 7 4 3 0 0 0 0 0 0
......................................................................ATGCTATCAGTGGATCCG.................................................................................................................................................................. 18 0 1 4.00 4 4 0 0 0 0 0 0 0
....................AGTCGTTCCATCGATCCGGACA................................................................................................................................................................................................................ 22 0 1 3.00 3 2 0 1 0 0 0 0 0
.ACTTGCGACTCGGCCAGT....................................................................................................................................................................................................................................... 18 0 1 3.00 3 2 0 1 0 0 0 0 0
............................CATCGATCCGGACACCTACC.......................................................................................................................................................................................................... 20 0 1 3.00 3 0 3 0 0 0 0 0 0
GACTTGCGACTCGGCCAGT....................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0
.................GTCAGTCGTTCCATCGATCCGGACAC............................................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0
.........................TTCCATCGATCCGGACACC.............................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0
........................GTTCCATCGATCCGGACACCT............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................GTCGTTCCATCGATCCGGACACCT............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
......................TCGTTCCATCGATTCGGACACC.............................................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0
......................................................GTACCTTCTAGTGGAGATG................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................GATGCTATCAGTGGATCCG.................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................ATCGATCCGGACACCTACCAAGTGA.................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
........................GTTCCATCGATCCGGACACCTACCAAC....................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0
...........................CCATCGATCCGGACACCTACCAAG....................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
....................AGTCGTTCCATCGATCCGGACACCT............................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................ATCGATCCGGACACCTACC.......................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
................................GATCCGGACACCTACCAA........................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.............GCCAGTCAGTCGTTCCAT........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
................AGTCAGTCGTTCCATCGATCCGGAC................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................CCAGAGAACAGACGGTGCTGT..................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................AGATGCTATCAGTGGATC.................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................TCCATCGATCCGGACACCTA............................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................CCGGACACCTACCAAGTGAGTACCT.............................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................TGCTGGGGATCTGAAAACAAAACTTT..................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................ATCCGGACACCTACCAAG....................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
......................TCGTTCCATCGATCCGGACACC.............................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................TCCATCGATCCGGACACCC............................................................................................................................................................................................................. 19 1 2 0.50 1 1 0 0 0 0 0 0 0
.....................................................................................CCGCTCTGTTGGGGATC.................................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 0 1 0 0
.....................................................................................................CTGAAAACAAAACTTTA.................................................................................................................................... 17 1 7 0.14 1 0 0 0 0 0 0 1 0
.............................................................................................CTGGGGTTGTGAAAACA............................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTGAACGCTGAGCCGGTCAGTCAGCAAGGTAGCTAGGCCTGTGGATGGTTCACTCATGGAAGATCACCTCTACGATAGTCACCTAGGCGAGACGACCCCTAGACTTTTGTTTTGAAAGGTCGGTCGTTGGTCTCTTGTCTGCCACGACAATAGCGAGCTATTCTCACCATAGTCGAGAATTAGTCATTAGGTATTTAGAGGAGTGCAAGAGGAGGCGGTCTTGTTGTTAAGAGGTATCTTTATTGGGACC
*****************************************************************************************************((.........((..(((((((((((((((................)))..))))))....)))......)))..))))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
...................................................................TTCTACGATAGTCACCTAGGC.................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.....................CAGCAAGGTAGCTAGGCCTGT................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................CGACAATAGCGAGCTATTCTCA.................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................................TCGAGACTTAGACATTAGGAA......................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TTTGCAAGAGGACGCGGTCTT............................ 21 3 2 0.50 1 0 0 0 0 1 0 0
....................................................................................................AGACTTTTGTTTTGA....................................................................................................................................... 15 0 3 0.33 1 0 0 0 0 0 0 1
............................................................................................................................................................................TCGAGAGTTAGACATTAGGAA......................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................AGGCGGTCTTGTGGTTAT.................... 18 2 5 0.20 1 0 0 0 1 0 0 0
...........................................................................................................................................................................CTCGAGAGTTAGACATTAG............................................................ 19 3 17 0.18 3 0 3 0 0 0 0 0
...........................................................................................................................................................................CTCGAGAGTTAGACATTAGG........................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0
............................................................................................................................................................................TCGAGAGTTAGACATTAG............................................................ 18 2 6 0.17 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................ATAGCTATTTAGAGGAG............................................... 17 2 7 0.14 1 0 0 0 0 0 1 0
.....................................................................................................GGGTTTTGTTTTGAAAGTTCGGTC............................................................................................................................. 24 3 9 0.11 1 0 0 0 1 0 0 0
..............................AGCTTGGCCTGTGGA............................................................................................................................................................................................................. 15 1 10 0.10 1 0 0 0 1 0 0 0
...............................GCTTGGCCTGTGGAGGG.......................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 1 0
........................................................................................................................................................................ATAGTCGTGAAATAGTGATTA............................................................. 21 3 11 0.09 1 0 0 0 0 0 1 0
....................................................................................................................................TCTTGTCTGCTATGACA..................................................................................................... 17 2 11 0.09 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:18921255-18921504 - dsi_22141 GACTTGCGACTCGGCCAGTCAGTCGTT--C-CATC---GATCCGGAC----ACCT----ACCAAGTGAGTACC------TTCT-AGTGGAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTG---------------------AAAACAAAACTTTCCAGCCAGCAACCAGAG-AACAGACGGT-----GCTG-TTATCGCTCGATAAGAGTGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCACGTTCTCCTCCGC-CAGAACAACAATTCT-CCA--TAGAAATAACCCTGG-----------------------------------------------------------------------------------------------
droSec2 scaffold_19:1216111-1216360 - GACTCGCGACTCGGCCAGTCAGTCGTT--C-CATC---GATCCGGAC----ACCT----ACCAAGTGAGTACC------TTCT-AGTGGAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTG---------------------AAAACAAAACTTTCCAGCCAGCAACCAGAG-AACAGACGGT-----GCTG-TTATCGCTCGATAAGAGTGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCACGTTCTCCTCCGC-CAGAAGAACAATTCT-TCA--TAGAAATAACCCTGG-----------------------------------------------------------------------------------------------
dm3 chr3L:19261749-19261998 - GACTTGCGACTCGGCCAGTCAGTCGTT--C-CATC---GATCCGGAC----ACCT----ACCAAGTGAGTACC------TTCT-AGTGGAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTG---------------------AAAACAAAACTTTCCAGCCAGCAACCAGAG-AACAGACGGA-----GCTG-TTATCGCTCGATAAGAGCGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCCCGTTCTCCTCCGC-CAGAACAACAATTCT-TCG--TAGAAATAACCCTGG-----------------------------------------------------------------------------------------------
droEre2 scaffold_4784:19074287-19074530 - GACTTGCGACTCGGCCAGT----CGTT--C-CTTC---AATCCGGGC----ACCC----ACCAAGTGAGTACC------TTCT-AAGTGAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTG---------------------AAA--AAAACTTTCCAGTCAGCAACCAGAG-AACAGAAGGT-----GCTG-TTATCGCTCGATAAGAGTGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCCCGTTCTCCTCCGC-CACAAAAACAAATTT-TCA--TAGAAATAACCCTGG-----------------------------------------------------------------------------------------------
droYak3 3L:21297343-21297583 + GACTTGCGACTCGGCCAGT----CGTT--C-CTTC---AATCCGGGC----ACCT----ATCAAGTAAGTACC------TTCT-AAGTGAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTG---------------------AA---AAAACTTTCCAGCCAGCAACCGGAG-AACAGGCGGA-----GCTG-TTATCGCTCGATAAGACTGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCACCTTCTCCTCCGG-CAGAAAAAGAATTTT---A--TAGAAACAACGCTGG-----------------------------------------------------------------------------------------------
droEug1 scf7180000409471:204668-204923 + GACTTGCGACTCGGTCAGTCAGTCGTT--C-TTTT---AATCCAGAC----ACCT----ACAAAGTGAGTACCCAGGCCGCCTTAATTAAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTA---------------------AG---AAAAATTTCCAGCCAGCAACCAGAA-AACTGTCGGA-----GCTG-TTATCGCTCGATAAGAGTGGTATCAGGTCGTAATCAGTAATCCATAAATCTCCTCTCGTTCTCCTCCTC-CAGAAATACAATTTT-GTATTTAGAAATATAACTAA-----------------------------------------------------------------------------------------------
droBia1 scf7180000302529:213025-213264 + GACTGGCGACGCGGGCAGT----CGCT--G-T-TT---AATCCGGGC----ACCT----ACCAAGTGAGTACC------GCCTCGATGGAGATGCTATC------AGCGGATCCG---CTCTGCTGGGGACCTA---------------------------AAAGTTTCCAGCCAGCAACCAGAA-AACAGGCGGA-----GCTG-CTATCGCCCGATAAGAGTGGTATCAGGTCGTAATCAGTAATCCATAAATCTCCTCTCGTTCTGCTCTGC-CAGAAATACGAATTT-TCA--ATAAAACAGCCTTGT-----------------------------------------------------------------------------------------------
droTak1 scf7180000414404:17690-17929 + GACTTGTGACTCGGGCAGT----CGCT--C-TTTG---AATCCGGGC----ACCT----ACTAAGTAAGTCA---------CTCAATTGTGATGCTATC------AGTAGATCCG---CTCTGCTGGGGATCTA---------------------A----AAAACTTTCCAGCTAGTGACTAGAA-ATCAGACGGA-----GCTG-TTATCGCTCGATAAGAATGGTATCAGGTCGTAATCAGTAATCCATAAATCTCCTCTCGTTCGCCTGCGC-CAGAAGAAAAAATTTTTCG--TT-ATAAAGCCTAGT-----------------------------------------------------------------------------------------------
droEle1 scf7180000491249:6556325-6556554 - GACTTGCGACTCGGACAGT----CCTA--C-TTTA---AATCCGGGCAAACACAT----ATTAAGTGAGTACC------GCCTCAATTGAGATGCTATC------AGTGGGTCCG---CTCTGCTGGGGATCTA---------------------AA---AAAACTTTCCAGCCAGCAACCAGAA-AACAGACGGAGCTCTGCTC-TTATCGCTCGATAAGAATGGTATCAGGGCATAATCAGTAATCCATAAATCTCCTCTCGCTCTCCTGCGC-TAAAAA-ACAA------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779614:36716-37060 - GACTAGCGACTCGGGCAGT----CCTA--C-TTCC---AATCCGGGCATTCATAT----TCCAAGTGAGTACC------GCCTCAATTGAGATGCTATC------AGTGGATCCG---CACTGCTGGGGATCTA---------------------AAA--AAAAATTTCCAGCCAGCAACCAGAA-AACAGACGGA-----GCTC-TTATCGCTCGATAAGAATGGTATCAGGTCATAATCAGTAATCCATAAATCTCCTCTTGCTCTCCTCCTC-CAAAAATACACTTTT-TCGT-TAAAAAAAAACATTGAAAATTAAAGTAATTTGTTACTTTATTACAACAGATAAAAATTAACAGTTATTAAGTGTTACTACGTTCCTACAAAATTAGTTAAAGAAGGCTTA
droFic1 scf7180000453824:649670-649915 - GACTTGCGAGTCGGGCAGT----CGTT--C-TTCC---GATCCAATC----TTAT----ACCAAGTGAGTACC------GCCCCGATTGGGATGCTATCAGTATCAGTAGATCCG---CTCTGCTGGGGATCTA---------------------AAA--AAAACTTTCCAGCCAGCAACCAGAA-AACTGGCGGA-----GCTG-TTATCAACCGATAAGAATGGTATCAGGTCGTAATCAGTAATCCATAAATCTCCTCTCGTTCTCCTCCGC-CAGAGAACCAATTCT--CA--T----ACAGAACTGA-----------------------------------------------------------------------------------------------
droKik1 scf7180000302686:889763-889996 - GACTTGCGACTGTGGCAGT----TGTGATC-TCTC---AATCCGGAG----GCAA----ACAAAGTGAGTACC--GAACGACTCAACGGAGATGCTATC------AGTAGATCCGCG-CGCTGCTGGGGATCTA---------------------AAAA-AAAACTTTCCAGCCAGCAACCAGAAAAACAGACGGA-----GCAG-TTATCGCTCGATAAGAATGGTATCAGGGCGTAATCAGTAATCCATAAATCTCCTCTCGCTCCTCTACACACAG-------------------------ACCCCAAA-----------------------------------------------------------------------------------------------
droAna3 scaffold_13337:18198099-18198318 + GACTTGCGACTTGAACAGT----CGAGGAC-AAGA---GATCCGGAG----GCGTATACACAATGTGAGTAGG------GTGTCAATTAAGATGCTATC------AGTAGATCCG---CTCTGCTGGGGATCTA---------------------AAA--AAAACTTTCCAGCCAGCAACCAGAA-AACAGGCGAAGC-GAGCAG-TTATCGCTCGATAGCGACGGTATCAGCTCATAATCAGTAATCCATAAATCTCCTCTTGCTCTGCTCC--------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396741:1380589-1380807 + GACTTGCGACTTGAACGGT----AGAGGAC-TCGG---GATCCGGAG----GCGTATACACAATGTGAGTATG------GTGTCAATTAAGATGCTATC------AGTAGATCCG---CTCTGCTGGGGATCTA---------------------AA---AAAACTTTCCAGCCAGCAACCAGAA-AACAGGCGTAGC-GGGCAG-TTATCGCTCGATAGCCGCGGTATCAGCATATAATCAGTAATCCATAAATCTCCTCTTGCTCTGCTCC--------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group8:7351060-7351291 - GACCAGCGACGTGGGCAGA----CGAGGATACGACGACACTTTGGGC----AC------ACAATGTGAGTA-----------TTAAGTGGGATGCTATC------AGTGGATGGGCCCCTCCGCTGGGGGTGCGTGGGCCTAGCAGTCAGACCACGA---AAAAGTTTTCAGTAAACAAGCTGAA-ACCGGGCGGA-----GCTGCCTATCGCTCGATAAGCGGCGTATCAGGGCGTAATCAGTAATCCATAAATCTC-----GCTCTCCTCCAG-CA---------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_48:141201-141432 - GACCAGCGACGTGGGCAGA----CGAGGATACGACGACACTTTGGGC----AC------ACAATGTGAGTA-----------TTAAGTGGGATGCTATC------AGTGGATGGGCCCCTCTGCTGGGGGTGTGTGGGCCTAGCAGTCAGACCACGA---AAAATTGTTCAGTAAACAAGCTGAA-ACCGGGCGGA-----GCTGCCTATCGCTCGATAAGCGGCGTATCAGGGCGTAATCAGTAATCCATAAATCTC-----GCTCTCCTCCAG-CA---------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GACTTGCGACTCGGCCAGTCAGTCGTT--C-CATC---GATCCGGAC----ACCT----ACCAAGTGAGTACC------TTCT-AGTGGAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTG---------------------AAAACAAAACTTTCCAGCCAGCAACCAGAG-AACAGACGGT-----GCTG-TTATCGCTCGATAAGAGTGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCACGTTCTCCTCCGC-CAGAACAACAATTCT-CCA--TAGAAATAACCCTGG-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................T--C-CATC---GATCCGGAC----ACC.................................................................................................................................................................................................................................................................................................................................................................1817.00740300000000000000
...........................................................................................ATGCTATC------AGTGGATCCG---.................................................................................................................................................................................................................................................................................................1814.00440000000000000000
....................AGTCGTT--C-CATC---GATCCGGAC----A...................................................................................................................................................................................................................................................................................................................................................................2213.00321000000000000000
.ACTTGCGACTCGGCCAGT....................................................................................................................................................................................................................................................................................................................................................................................................1813.00321000000000000000
...............................CATC---GATCCGGAC----ACCT----ACC.........................................................................................................................................................................................................................................................................................................................................................2013.00300300000000000000
GACTTGCGACTCGGCCAGT....................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
.................GTCAGTCGTT--C-CATC---GATCCGGAC----AC..................................................................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
.........................TT--C-CATC---GATCCGGAC----ACC.................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
........................GTT--C-CATC---GATCCGGAC----ACCT----............................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....................GTCGTT--C-CATC---GATCCGGAC----ACCT----............................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
....................................................................GTACC------TTCT-AGTGGAGATG.........................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........................................................................................GATGCTATC------AGTGGATCCG---.................................................................................................................................................................................................................................................................................................1911.00110000000000000000
................................ATC---GATCCGGAC----ACCT----ACCAAGTGA...................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
........................GTT--C-CATC---GATCCGGAC----ACCT----ACCAAC......................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.............................C-CATC---GATCCGGAC----ACCT----ACCAAG......................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
....................AGTCGTT--C-CATC---GATCCGGAC----ACCT----............................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
................................ATC---GATCCGGAC----ACCT----ACC.........................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
......................................GATCCGGAC----ACCT----ACCAA.......................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
.............GCCAGTCAGTCGTT--C-CAT.....................................................................................................................................................................................................................................................................................................................................................................................1811.00100000000000100000
................AGTCAGTCGTT--C-CATC---GATCCGGAC----....................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
...................................................................................................................................................................................CCAGAG-AACAGACGGT-----GCTG-T........................................................................................................................................................................................................2111.00110000000000000000
.........................................................................................AGATGCTATC------AGTGGATC......................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..........................T--C-CATC---GATCCGGAC----ACCT----A...........................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.........................................CCGGAC----ACCT----ACCAAGTGAGTACC------T.......................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
.........................................................................................................................TGCTGGGGATCTG---------------------AAAACAAAACTTT...............................................................................................................................................................................................................................................2611.00110000000000000000
.......................................ATCCGGAC----ACCT----ACCAAG......................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
......................TCGTT--C-CATC---GATCCGGAC----ACC.................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..........................T--C-CATC---GATCCGGAC----ACCC----............................................................................................................................................................................................................................................................................................................................................................1920.50110000000000000000
...................................................................................................................................CTG---------------------AAAACAAAACTTTA..............................................................................................................................................................................................................................................1770.14100000000010000000
droSec2
GACTCGCGACTCGGCCAGTCAGTCGTT--C-CATC---GATCCGGAC----ACCT----ACCAAGTGAGTACC------TTCT-AGTGGAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTG---------------------AAAACAAAACTTTCCAGCCAGCAACCAGAG-AACAGACGGT-----GCTG-TTATCGCTCGATAAGAGTGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCACGTTCTCCTCCGC-CAGAAGAACAATTCT-TCA--TAGAAATAACCCTGG-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................ATGCTATC------AGTGGATCCG---.................................................................................................................................................................................................................................................................................................1813.0032001
...............................................................AGTGAGTACC------TTCT-AGTGGAGATG.........................................................................................................................................................................................................................................................................................................................2412.0021001
................................................................GTGAGTACC------TTCT-AGTGGAGATG.........................................................................................................................................................................................................................................................................................................................2311.0011000
................................................................................................................CCG---CTCTGCTGGGGATCTG---------------------AAAA........................................................................................................................................................................................................................................................2311.0011000
.........CTCGGCCAGTCAGTCGTT--C-........................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................................................................................................................................................................CTTTCCAGCCAGCAACCAGAG-AACA.........................................................................................................................................................................................................................2511.0010100
....CGCGACTCGGCCAGTCAGTCGTT--..........................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
......................................................T----ACCAAGTGAGTACC------TTCT-AG.................................................................................................................................................................................................................................................................................................................................2111.0011000
..........................T--C-CATC---GATCCGGAC----ACCT----ACC.........................................................................................................................................................................................................................................................................................................................................................2211.0010100
.........................................................................................................................................................................................................GCTG-TTATCGCTCGATAAGAGTGGT....................................................................................................................................................................................2511.0010001
.......................................................................................................................................................................TCCAGCCAGCAACCAGAG-AACAG........................................................................................................................................................................................................................2311.0011000
....CGCGACTCGGCCAGTCAGTCGT.............................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..................................................................................................................................................................................ACCAGAG-AACAGACGGT-----GCTG-T........................................................................................................................................................................................................2211.0011000
dm3
GACTTGCGACTCGGCCAGTCAGTCGTT--C-CATC---GATCCGGAC----ACCT----ACCAAGTGAGTACC------TTCT-AGTGGAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTG---------------------AAAACAAAACTTTCCAGCCAGCAACCAGAG-AACAGACGGA-----GCTG-TTATCGCTCGATAAGAGCGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCCCGTTCTCCTCCGC-CAGAACAACAATTCT-TCG--TAGAAATAACCCTGG-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................AGTCGTT--C-CATC---GATCCG...........................................................................................................................................................................................................................................................................................................................................................................18111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100010000000000020400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000
.............GCCAGTCAGTCGTT--C-CAT.....................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000100000000000000000000000000000000000000000000
.ACTTGCGACTCGGCCAGT....................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000100000000000000000000
...........................................................................................ATGCTATC------AGTGGATCCG---.................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000010000000000000000000010000
....................AGTCGTT--C-CATC---GATCCGGA.........................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000100000000000000000000
.....GCGACTCGGCCAGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................1713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGCGACTCGGCCAGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GCCAGTCAGTCGTT--C-CATC---.................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000
...............................CATC---GATCCGGAC----ACCT----A...........................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000
..CTTGCGACTCGGCCAGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AGAG-AACAGACGGA-----GCTG-TTA......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................AGTCGTT--C-CATC---GATCCGGAC----....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................ATGCTATC------AGTGGATCCC---.................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACTTGCGACTCGGCCAGTCAGTC...............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ATC---GATCCGGAC----ACCT----ACC.........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GATCCGGAC----ACCT----ACCAAGTGAG..................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...................CAGTCGTT--C-CATC---GATCCG...........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GTCGTT--C-CATC---GATCCGGAC----....................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGCGACTCGGCCAGTCAGTC...............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................GTCGTT--C-CATC---GATCCGGAC----A...................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................GAG-AACAGACGGA-----GCTG-T........................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...TTGCGACTCGGCCAGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GCGACTCGGCCAGTCAGTCG..............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
GACTTGCGACTCGGCCAGT....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................CATC---GATCCGGAC----ACCT----AC..........................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................TCTCCTCCCGTTCTCCTCCGC-C..................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GCCAGTCAGTCGTT--C-CATC---G................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACTCGGCCAGTCAGTCGTT--C-C.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ACTTGCGACTCGGCCAGTCAG.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...........................................GGAC----ACCT----ACCAAGTGAG..................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GTT--C-CATC---GATCCGGAC----ACC.................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TACC------TTCT-AGTGGAGATGC........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........CTCGGCCAGTCAGTCGTT--..........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACTCGGCCAGTCAGTCGTT--C-CATC---GAT..............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AGTCGTT--C-CATC---GATCCGG..........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.................................................................TGAGTACC------TTCT-AGTGGAGAT..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
....................AGTCGTT--C-CATC---GATCCGGAC----ACC.................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAGTCGTT--C-CATC---GATCCGGA.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......GACTCGGCCAGTCAGTCGTT--C-C.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGACTCGGCCAGTCAGTCGTT--..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......CGACTCGGCCAGTCAGTC...............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................TCCGGAC----ACCT----ACCAAGT.....................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAGTCGTT--C-CATC---GATCCGG..........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGACTCGGCCAGTCAGTCGTT--C-C.......................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TTGCGACTCGGCCAGTCAGTC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TGCTGGGGATCTG---------------------AAAACAT.....................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
......CGACTCGGCCAGTCAGTCGTT--C-CATC---G................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...................CAGTCGTT--C-CATC---GATCCGGAC----A...................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.........CTCGGCCAGTCAGTCGTT--C-C.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...........CGGCCAGTCAGTCGTT--C-CATC---.................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................GATCCGGAC----ACCT----ACCAACAT....................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GACTTGCGACTCGGCCAGT----CGTT--C-CTTC---AATCCGGGC----ACCC----ACCAAGTGAGTACC------TTCT-AAGTGAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTG---------------------AAA--AAAACTTTCCAGTCAGCAACCAGAG-AACAGAAGGT-----GCTG-TTATCGCTCGATAAGAGTGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCCCGTTCTCCTCCGC-CACAAAAACAAATTT-TCA--TAGAAATAACCCTGG-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............GGCCAGT----CGTT--C-CTTC---AATCCG...........................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
...........................................................................................ATGCTATC------AGTGGATCCG---CTCTGC...........................................................................................................................................................................................................................................................................................2411.0010001000
...........................................................................................ATGCTATC------AGTGGATCCG---.................................................................................................................................................................................................................................................................................................1811.0010000010
.......................CGTT--C-CTTC---AATCCGGGC----ACCC----A...........................................................................................................................................................................................................................................................................................................................................................2311.0010100000
.............GCCAGT----CGTT--C-CTTC---AATCCGGG.........................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
................AGT----CGTT--C-CTTC---AATCCGGGC----ACCC----............................................................................................................................................................................................................................................................................................................................................................2511.0010100000
.......................CGTT--C-CTTC---AATCCGGGC----....................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
droYak3
GACTTGCGACTCGGCCAGT----CGTT--C-CTTC---AATCCGGGC----ACCT----ATCAAGTAAGTACC------TTCT-AAGTGAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTG---------------------AA---AAAACTTTCCAGCCAGCAACCGGAG-AACAGGCGGA-----GCTG-TTATCGCTCGATAAGACTGGTATCAGCTCTTAATCAGTAATCCATAAATCTCCTCACCTTCTCCTCCGG-CAGAAAAAGAATTTT---A--TAGAAACAACGCTGG-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GACTTGCGACTCGGTCAGTCAGTCGTT--C-TTTT---AATCCAGAC----ACCT----ACAAAGTGAGTACCCAGGCCGCCTTAATTAAGATGCTATC------AGTGGATCCG---CTCTGCTGGGGATCTA---------------------AG---AAAAATTTCCAGCCAGCAACCAGAA-AACTGTCGGA-----GCTG-TTATCGCTCGATAAGAGTGGTATCAGGTCGTAATCAGTAATCCATAAATCTCCTCTCGTTCTCCTCCTC-CAGAAATACAATTTT-GTATTTAGAAATATAACTAA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GACTGGCGACGCGGGCAGT----CGCT--G-T-TT---AATCCGGGC----ACCT----ACCAAGTGAGTACC------GCCTCGATGGAGATGCTATC------AGCGGATCCG---CTCTGCTGGGGACCTA---------------------------AAAGTTTCCAGCCAGCAACCAGAA-AACAGGCGGA-----GCTG-CTATCGCCCGATAAGAGTGGTATCAGGTCGTAATCAGTAATCCATAAATCTCCTCTCGTTCTGCTCTGC-CAGAAATACGAATTT-TCA--ATAAAACAGCCTTGT-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GACTTGTGACTCGGGCAGT----CGCT--C-TTTG---AATCCGGGC----ACCT----ACTAAGTAAGTCA---------CTCAATTGTGATGCTATC------AGTAGATCCG---CTCTGCTGGGGATCTA---------------------A----AAAACTTTCCAGCTAGTGACTAGAA-ATCAGACGGA-----GCTG-TTATCGCTCGATAAGAATGGTATCAGGTCGTAATCAGTAATCCATAAATCTCCTCTCGTTCGCCTGCGC-CAGAAGAAAAAATTTTTCG--TT-ATAAAGCCTAGT-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GACTTGCGACTCGGACAGT----CCTA--C-TTTA---AATCCGGGCAAACACAT----ATTAAGTGAGTACC------GCCTCAATTGAGATGCTATC------AGTGGGTCCG---CTCTGCTGGGGATCTA---------------------AA---AAAACTTTCCAGCCAGCAACCAGAA-AACAGACGGAGCTCTGCTC-TTATCGCTCGATAAGAATGGTATCAGGGCATAATCAGTAATCCATAAATCTCCTCTCGCTCTCCTGCGC-TAAAAA-ACAA------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GACTAGCGACTCGGGCAGT----CCTA--C-TTCC---AATCCGGGCATTCATAT----TCCAAGTGAGTACC------GCCTCAATTGAGATGCTATC------AGTGGATCCG---CACTGCTGGGGATCTA---------------------AAA--AAAAATTTCCAGCCAGCAACCAGAA-AACAGACGGA-----GCTC-TTATCGCTCGATAAGAATGGTATCAGGTCATAATCAGTAATCCATAAATCTCCTCTTGCTCTCCTCCTC-CAAAAATACACTTTT-TCGT-TAAAAAAAAACATTGAAAATTAAAGTAATTTGTTACTTTATTACAACAGATAAAAATTAACAGTTATTAAGTGTTACTACGTTCCTACAAAATTAGTTAAAGAAGGCTTASizeHit CountTotal NormTotal
No Reads
droFic1
GACTTGCGAGTCGGGCAGT----CGTT--C-TTCC---GATCCAATC----TTAT----ACCAAGTGAGTACC------GCCCCGATTGGGATGCTATCAGTATCAGTAGATCCG---CTCTGCTGGGGATCTA---------------------AAA--AAAACTTTCCAGCCAGCAACCAGAA-AACTGGCGGA-----GCTG-TTATCAACCGATAAGAATGGTATCAGGTCGTAATCAGTAATCCATAAATCTCCTCTCGTTCTCCTCCGC-CAGAGAACCAATTCT--CA--T----ACAGAACTGA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GACTTGCGACTGTGGCAGT----TGTGATC-TCTC---AATCCGGAG----GCAA----ACAAAGTGAGTACC--GAACGACTCAACGGAGATGCTATC------AGTAGATCCGCG-CGCTGCTGGGGATCTA---------------------AAAA-AAAACTTTCCAGCCAGCAACCAGAAAAACAGACGGA-----GCAG-TTATCGCTCGATAAGAATGGTATCAGGGCGTAATCAGTAATCCATAAATCTCCTCTCGCTCCTCTACACACAG-------------------------ACCCCAAA-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GACTTGCGACTTGAACAGT----CGAGGAC-AAGA---GATCCGGAG----GCGTATACACAATGTGAGTAGG------GTGTCAATTAAGATGCTATC------AGTAGATCCG---CTCTGCTGGGGATCTA---------------------AAA--AAAACTTTCCAGCCAGCAACCAGAA-AACAGGCGAAGC-GAGCAG-TTATCGCTCGATAGCGACGGTATCAGCTCATAATCAGTAATCCATAAATCTCCTCTTGCTCTGCTCC--------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................GAC-AAGA---GATCCGGAG----GC..................................................................................................................................................................................................................................................................................................................................................................1812.002020000
.........CTTGAACAGT----CGAGGAC-AAGA---G................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
................................AGA---GATCCGGAG----GCGTATACACA.........................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................................GA---GATCCGGAG----GCGTATACAC..........................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................GT----CGAGGAC-AAGA---GATCCGGAG----....................................................................................................................................................................................................................................................................................................................................................................2211.001001000
.................GT----CGAGGAC-AAGA---GATCCGGAG----GCG.................................................................................................................................................................................................................................................................................................................................................................2511.001000010
............................AC-AAGA---GATCCGGAG----GCGT................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..........................GGAC-AAGA---GATCCGGAG----GC..................................................................................................................................................................................................................................................................................................................................................................1911.001010000
................AGT----CGAGGAC-AAGA---GATCCGGA.........................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
GACTTGCGACTTGAACGGT----AGAGGAC-TCGG---GATCCGGAG----GCGTATACACAATGTGAGTATG------GTGTCAATTAAGATGCTATC------AGTAGATCCG---CTCTGCTGGGGATCTA---------------------AA---AAAACTTTCCAGCCAGCAACCAGAA-AACAGGCGTAGC-GGGCAG-TTATCGCTCGATAGCCGCGGTATCAGCATATAATCAGTAATCCATAAATCTCCTCTTGCTCTGCTCC--------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GACCAGCGACGTGGGCAGA----CGAGGATACGACGACACTTTGGGC----AC------ACAATGTGAGTA-----------TTAAGTGGGATGCTATC------AGTGGATGGGCCCCTCCGCTGGGGGTGCGTGGGCCTAGCAGTCAGACCACGA---AAAAGTTTTCAGTAAACAAGCTGAA-ACCGGGCGGA-----GCTGCCTATCGCTCGATAAGCGGCGTATCAGGGCGTAATCAGTAATCCATAAATCTC-----GCTCTCCTCCAG-CA---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................TACGACGACACTTTGGGC----AC------A...........................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
GACCAGCGACGTGGGCAGA----CGAGG...........................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..............GCAGA----CGAGGATACGACGACACTTTG...........................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.......GACGTGGGCAGA----CGAGGATACGA.....................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................ATACGACGACACTTTGGGC----A...................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............GGCAGA----CGAGGATACGACGACACT..............................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................................CTTTGGGC----AC------ACAATGTGAGTA-----------TTAAG................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.........CGTGGGCAGA----CGAGGATACGACGACA................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................ATACGACGACACTTTGGGC----AC------............................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.......GACGTGGGCAGA----CGAGGATACGAC....................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
GACCAGCGACGTGGGCAGA----CGAGGATACGACGACACTTTGGGC----AC------ACAATGTGAGTA-----------TTAAGTGGGATGCTATC------AGTGGATGGGCCCCTCTGCTGGGGGTGTGTGGGCCTAGCAGTCAGACCACGA---AAAATTGTTCAGTAAACAAGCTGAA-ACCGGGCGGA-----GCTGCCTATCGCTCGATAAGCGGCGTATCAGGGCGTAATCAGTAATCCATAAATCTC-----GCTCTCCTCCAG-CA---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................ATACGACGACACTTTGGGC----....................................................................................................................................................................................................................................................................................................................................................................1916.006600000
............................ATACGACGACACTTTGGGC----A...................................................................................................................................................................................................................................................................................................................................................................2015.005410000
................................GACGACACTTTGGGC----AC------ACAAT.......................................................................................................................................................................................................................................................................................................................................................2212.002200000
............................ATACGACGACACTTTGGGC----AC------ACA.........................................................................................................................................................................................................................................................................................................................................................2412.002200000
..........................GGATACGACGACACTTTGGGC----....................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...........................GATACGACGACACTTTGGGC----AC------AC..........................................................................................................................................................................................................................................................................................................................................................2412.002200000
..........................GGATACGACGACACTTTGGGC----A...................................................................................................................................................................................................................................................................................................................................................................2212.002200000
............................ATACGACGACACTTTGGGC----AC------AC..........................................................................................................................................................................................................................................................................................................................................................2312.002200000
............................ATACGACGACACTTTGGGC----AC------ACAATC......................................................................................................................................................................................................................................................................................................................................................2711.001100000
..............................ACGACGACACTTTGGGC----AC------ACAATCAT....................................................................................................................................................................................................................................................................................................................................................2711.001100000
............................ATACGACGACACTTTGGGC----AC------............................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................GAGGATACGACGACACTTTGGGC----AC------AC..........................................................................................................................................................................................................................................................................................................................................................2711.001100000
........................GAGGATACGACGACACTTTGGGC----....................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................GA----CGAGGATACGACGACACTTTGGGC----....................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.............GGCAGA----CGAGGATACGAC....................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
GACCAGCGACGTGGGCAGA----C...............................................................................................................................................................................................................................................................................................................................................................................................2011.001010000

Generated: 05/18/2015 at 05:06 PM