ID:

dsi_22140

 Coordinate:

3l:2048104-2048269 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.0 -5.9 -5.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGAGTATGAAGTCATAGTCACCGCGGCGGGCAAAAAGAATTCTCCGTTTCGAAAATCTACCGATTCGCGGAGGTTCTCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAACCGAAGGAACCGAACCGCCGAATCGAATCCCCTGGCTATAACTAACCCAATACATTAAATCCGAACGCGAGTGACTCAATCTAATAGTTCCACTTTCGAGCAGAGTTCAAAATGCAAAACACGCGAGACGAGCAGGGGAAATAAGCCAAAATA
***********************************************************************************************************......(((..(((..(((.........)))..)))..))).........................................***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 O002
Head
 M023
head
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
...................................................................CGGAGGTTCGAAGACGATCA................................................................................................................................................................................... 20 3 4 6.75 27 20 0 0 0 7 0 0 0 0
...........................................................................................................AACGAACCGAAGGAACCGAAC.......................................................................................................................................... 21 0 1 3.00 3 0 0 2 1 0 0 0 0 0
.............................................................................................................CGAACCGAAGGAACCGAACCGCC...................................................................................................................................... 23 0 1 2.00 2 0 1 0 1 0 0 0 0 0
...................................................................CGGAGGTTCGAAGACGAT..................................................................................................................................................................................... 18 2 2 2.00 4 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................................ATCCGAACGCGAGTGACT............................................................................. 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.................................................................................................................CCGAAGGAACCGAACCGCCGAAT.................................................................................................................................. 23 0 1 2.00 2 0 1 0 0 0 1 0 0 0
..................................................................TCGGAGGTTCGAAGACGATC.................................................................................................................................................................................... 20 3 5 1.40 7 3 1 0 2 1 0 0 0 0
.......................................................................GGTTCTCAGACGATCGCC................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................GCAAAACACGCGAGACGAGCAGGG................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0
......................................................................................................CTCGCAACGAACCGAAGGA................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................CGGAGGTTCGAAGACGATC.................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 1 0
.................................................................................................................CCGAAGGAACCGAACCGCCGAATCGA............................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................GTTGATAGCGCTCGCAAC............................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.............................................................................................................CGAACCGAAGGAACCGAACCGCCGAAT.................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................GGAGGTTCGAAGACGAT..................................................................................................................................................................................... 17 2 9 0.78 7 3 0 0 0 2 0 0 0 2
....................................................................GGAGGTTCTAAGACGA...................................................................................................................................................................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0
..................................AAGGATTCTCCGTTTTGA...................................................................................................................................................................................................................... 18 2 8 0.25 2 0 0 0 0 0 0 0 2 0
..................................................................TCGGAGGTTCGAAGACGAT..................................................................................................................................................................................... 19 3 13 0.23 3 1 0 0 0 0 0 0 0 2
...........................................................................CTCAGACGAACGCTGGC.............................................................................................................................................................................. 17 2 11 0.18 2 1 0 0 0 1 0 0 0 0
.......................................................................................CCGGTGTTGATAGCGGT.................................................................................................................................................................. 17 2 6 0.17 1 0 0 0 0 0 0 0 0 1
.......................................................ACGACCCATTCGCGGAGG................................................................................................................................................................................................. 18 3 20 0.10 2 0 0 0 0 2 0 0 0 0
.......................CGGCGGGCGAAAAGAAATC................................................................................................................................................................................................................................ 19 2 13 0.08 1 0 0 0 0 0 1 0 0 0
.......................CGGCGAGCAAAAAGAA................................................................................................................................................................................................................................... 16 1 17 0.06 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCTCATACTTCAGTATCAGTGGCGCCGCCCGTTTTTCTTAAGAGGCAAAGCTTTTAGATGGCTAAGCGCCTCCAAGAGTCTGCTAGCGGCCGCAACTATCGCGAGCGTTGCTTGGCTTCCTTGGCTTGGCGGCTTAGCTTAGGGGACCGATATTGATTGGGTTATGTAATTTAGGCTTGCGCTCACTGAGTTAGATTATCAAGGTGAAAGCTCGTCTCAAGTTTTACGTTTTGTGCGCTCTGCTCGTCCCCTTTATTCGGTTTTAT
*****************************************************************************......(((..(((..(((.........)))..)))..))).........................................*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
......................................................................................................................CCTTAGCTTGGCGGCT.................................................................................................................................... 16 1 4 4.50 18 14 3 0 0 1 0
........................................................................................................GCGTTGGTTTGCCTCCTTGG.............................................................................................................................................. 20 3 7 3.14 22 0 22 0 0 0 0
...................................................................................................................CTGCCCTAGCTTGGCGGCT.................................................................................................................................... 19 3 16 2.88 46 2 0 44 0 0 0
...................................................................................................................CTGCCTTAGCTTGGCGGCT.................................................................................................................................... 19 2 1 2.00 2 0 0 1 1 0 0
..............................................................................................................................................................GTGTGATGTCATTTAGGCTTG....................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................TTACATGTTGTGCGCTCT......................... 18 2 5 0.40 2 2 0 0 0 0 0
........................................................................................................GCGTTGCTTTGCCTCCTTG............................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0
....................................................................................................................TGCCTTAGCTTGGCGGCTTTG................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 1
.............................................................................................................................TGGGCGGCTTAACTTAGG........................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0
...............................................................................................................................................................................................................................................CTGCTCGTCGCCTTTCTCCGGT..... 22 3 6 0.33 2 0 0 0 0 2 0
..................................................................................................................CCTGCCTTAGCTTGGCGGCT.................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0
...................................................................................................................CTGCCTTAGCTTGGCGGC..................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1
..............................................................................................................GTTGGCGTCCTTGCCTTGGC........................................................................................................................................ 20 3 6 0.17 1 0 0 1 0 0 0
...................................................................................................................CTGCCTTAGCTTGTCGGCT.................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0
...................................................................................................................CTGTCTTAGCTTGGCGGCT.................................................................................................................................... 19 3 17 0.06 1 1 0 0 0 0 0
.....................................................................................................................GCCTTAGCTTGGCGGCT.................................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0
.................................................................................................................................................................................................GGTTATGCAGGTGAAAGC....................................................... 18 3 20 0.05 1 0 1 0 0 0 0
...................................................................................................................CTACCCTAGCTTGGCGGCT.................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0
...................................................................................................CGAGAGGGTTGCTTGG....................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0
.........................................................................................................................................................................................................................................TGCGCTCTGCTAGTGC................. 16 2 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:2048054-2048319 - dsi_22140 C-----------------GA-GTATGAAGTCATA--------GTCACCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCTACC------GATTCGCG--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAC-------------------CGAAGGAACCGAACCG--------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TAT------AACTAA-CCCAATA------CATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GCGAGACGAGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATA
droSec2 scaffold_2:2176350-2176610 - C-----------------GA-GTATGAAGTCATA--------GTCACCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCTACC------GATTCGCG--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAC-------------------CGAAGGAACCG-------------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TAT------AACTAA-CCCAATA------CATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GCGAGTCGAGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATA
dm3 chr3L:2150232-2150495 - C-----------------GA-GTATGAAGTCATA--------GTCATCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCTACC------GATTCGCG--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAA-------------------CGAAGGAACCG-------------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TAT------AACTAATCCCAATA------AATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------CT-T---T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GAGACACAAGCAGGGGAAGT----------------------------------------------AAGCC-----AAAATA
droEre2 scaffold_4784:2145073-2145333 - C-----------------GA-GTATGAAGTCATA--------GTCATCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCAACC------GATTCGCG--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAC-------------------CGAAGGAACCG-------------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TAT------AACTAA-CCCAATA------AATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GCGAAACAAGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATA
droYak3 3L:2103205-2103465 - C-----------------GA-GTATGAAGTCATA--------GTCATCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCAACC------GATTCGCG--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAC-------------------CGAAGGAACCG-------------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TAT------AACTAA-CCCAATA------AATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GCGACACAAGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATA
droEug1 scf7180000409091:122416-122679 + C-----------------GA-GTATGAAGTCATA--------GTC---GCGGCGGGCAAA----AAGCGTT-----------C----------------------------------------TCCGTTTTGAAAATCTACC------GATTCGCA--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAA------T------------CGAAGGAATCG-------------CCGAATCGAATCC---------------CCT------------------TTG-----------C------------------------------------------TCTAACT--AACTAA-CCCAATA------AATT-AAAT-------------------------------CC-----------------------------------------------GA------------------C--CGCGAGTG-ACTCAATTT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GCGAAACGGGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATA
droBia1 scf7180000302428:8875691-8875959 - C-----------------GA-GTATGAAGTCATA--------GTGATCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCTATTCGAAAATCTACC------GATTCGCA--GCGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGTTCGCAACGAAA------T-------------------------------------CGAAACGAATCC---------------CCTG----GC------------TG-----------C------------------------------------------CCT------AACTAA-CCCGACA------AATT-TTGT---------A------------CTTACAAAGAC-----------------------------------------------GC-A----------------A--CGCGAGTG-ACTCGTTCT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCC-------AAGCAC----------------GCGAAACAAGCAGGGGAAAT----------------------------------------------AAGCCAAACAAAAATA
droTak1 scf7180000414400:85472-85704 - C-----------------GA-GTATGAAGTCATA--------G-------------CAAAAT--AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCTACC------GATTCGCA--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGATCGCAACGAAA------T-------------------------------------CGAAACG-ATCC--------------------------------------------------------------------------------------------------------------CCAATA------AATT------------------------------------TT-----------------------------------------------TA------------------A--CGCGAGTG-ACTCAATTT-AATAGTTCT-------------------------------------------------TTACA-T----TCGAA-ACAGAGTTCAA---AATGCA-------AAACAC----------------GCGAAATAAGCAGGGGAAAT------------------------------AA----TAGTAACCAATAAAA-----AAACTA
droEle1 scf7180000491249:3338050-3338312 + C-----------------GA-GTATGAAGTCATA--------GTCATCGAGGCAGGCAAAAAAGAAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCAACC------GATTCGCA--GCGGAT---C---------------------TCAGACGATCGCCGGCATTGATAGCGTTCGCAACGAAT-------------------C------------------------CGAATCGAATCC---------------CCTGCCTAGT--------------------------------------------------------------------TAT------AG------CCAATA------AATTTAAAT-------------------------------CC-----------------------------------------------GACT----------------C--CGCGAGTG-ACTCAATTT-TATAATACT----------------A-----------------------------CTAATACT-T----TCAAA-ACAGAGTTCAA---AATGCA-------AAGCAC----------------GCGAAATAAGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATA
droRho1 scf7180000779211:83105-83381 - C-----------------GA-GTATGAAGTCATA--------GTCATCGAGGCGGGCAAAAA--AAGAATT-----------C----------------------------------------TCCGATTCGAAAACCAACC------GATTCGCA--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAA------T------------CGAAGGAACCGAATCGCATCGAAT-CGAATCGAATCC---------------CCTGCTTAGT--------------------------------------------------------------------TAT------AG------CCAATA------AATC-AAGT---------T---------------------CC-----------------------------------------------AA------------------C--CGCGAGTG-ACTCAATTTTTATAACACC----------------A-----------------------------C------T-T----TCAA--ACAGAGTTCAA---AATGCA-------AAACAC----------------GCGAAATAAGTAGGGGAAGC----------------------------------------------AAACC-----AAAATA
droFic1 scf7180000453052:909290-909569 + C-----------------GA-GTATGAAGTCATA--------GTC---GCGGCGGGCAAAA---AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCAACC------GATTCGCA--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAA------G------------CTAAGGAACCGAATCGAATCGAAT-TGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------CAC------AACTAA-CCCAATAATAAAAAATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATTT-AATAGTGCC----------------T-----------------------------T------T-T----TCGAAAGCAGAGTTCAA---AATGCA-------AAACAC----------------GCGAAACAAGCAGGGGAAAT----------------------------------------------AAGCC-----GAAATA
droKik1 scf7180000302441:1651507-1651796 + C-----------------GA-GTATGAAGTCATA--------GTCG-------------------AGAATT-----------G----------------------------------------TCCGTTTCGAAAATCAACC------GATTCGCA--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGTTCGCAACGATCCGAA-ATC-------------------------------GAAA-CGAAGCAAATCCTCCATA-TAGCTC--TCTG----GC------------TATAGATATAGCGAC-----------------------------------------TATAACTATAACTAA-CCCAATA------AATT-AAG--------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCGATTG-TAAAGTCTA-----AAAGTC-A---T-----------------------------CT-T---C-TTCCCCCGA--GCAGAGTTCAA---AATGCA-------CAACAC----------------GCGAAATAACCCGGCATAGG----------------------------------------------TAACA-----TCAACG
droAna3 scaffold_13337:682138-682416 + C-----------------GC-CTATGAAGTCATA----CGCAGT---------------------CGAATT-----------G----------------------------------------AACGTTTCGAAAATGTACC------GATTCGGT--GAGGTTCTTC---------------------TCAGACGATCTCCGGCGTTGATAGCGCTCGCAGCGAAA-----ATCGAAAT------T------------------------CAAATCGAAGA---------------AT-----A-ACACA--TTACCTTTA-----------GTCGAACGAACCG-----T------------A----GAAACTAGCG------AACTAA-CCCAATA------AATT-ACG--------------------------------AG-----------------------------------------------AG------------------G--CGCGTGTG-ACTCAATTC-TAAAGTCTA----------------A-----------------------------T------C-C----CAGA--GTAGGGTTCAC---AATGCA-------GAGCCA----------------ACAGAGTAACCACTAAAAGG----------------------------------------------AAGAC-----AACATA
droBip1 scf7180000395155:74886-75187 - C-----------------GC-GTATGAAGTCATACATACGTAGT---CGAATTG-----------AACGTT-----------C----------------------------------------AACGTTTCGAAAATCTACC------GATTCGCT--GAGGTTCTTC---------------------TCAGACGATCTCCGGCGTTGATAGCGCTCGCAGCGAATAAAAAATCGAAAT------C------------------------CAAATCGAAGA---------------AT-----A-ACAAACCTTACCTTTA-----------GTCGAACGAACCGAACCCT------------A----GAAAGTAGGA------AACTAA-CCCAATA------ATTT-ACG--------------------------------AC-----------------------------------------------GG------------------G--CGCGTGTG-ACTCAATTT-TTAAGTCTA----------------A-----------------------------T------C-T----CAGA--GTAGGGTTCAA---AATGCA-------CAGCCA----------------TCAGAGTAACCACTAAAAGG----------------------------------------------AAGAC-----AAAATA
dp5 XR_group6:12059463-12059914 - TAGAGTAGAGCAGAGCAAAA-GCATGAAGTCATT--------TC----GCATTTC-----------GTAT----GGTGT---TTTTTTTTCAAATTTTATGCG-----------------------------A----GTACC------GATCTGTA--GAGCCG---TATAACCCGTAGAACCCGTAGAACAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAAGAGG-AAC-----GCAAATCGAGGAA----------------------ACGAAGA---------------ACA------GC------------CAGAGCTATAACGATCGAACGACCAGCACCCCCCACGCCCCCCTCGAACGAAACCCCAT------AACTAA-CCCACAA------AAGC-AAAA------------------------------------------------------------------------------------GCAAAACCCCCCAACAAAACGCGTCTCCTCTATATCT-ATCTCTCTC---------TC-----ACTCTCTGTCTCTGTCTCTGTCGCCCGTGTCTGTCGTGTT----CCGT--GTAGAGTTCAA---AATGTA-------CAACAA----------------GCTAAAACAATA--AAAAATAAACTAGAGAAAGA-GA--GAGAGAAACCGAATCGACACAAAAACAAAAAC----AAAAACA
droWil2 scf2_1100000004729:1242303-1242550 + --------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCTC---G---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAA-------------------CAAA--AATCG-------------C-AAAACGAACCA---------------CA------AC--------------------------------------------------------------------AAA------AACCAA-AATAAAA------AAAA-AAAACAAAACGAACCCAAAAACTAAC--------AATTTTTTTTTTGTATTCTTTTTTTTTTGTGTGCTTGTCTCTTGGAAGTTGA------------------------------------------------------------------------------------------------------A-A----ACAA--GAAAAAAATAA---AACACA-------AAATGT---------ACATCAAGTAAAGCTAACT--TAAAGG----------AG-AAGCGCGCGCG--------------------TGCAAAT-----AGAAAA
droVir3 scaffold_13049:11964457-11964799 + C-----------------GAGGCATGAAGTCATA--------GTCGATTTATTTGCCA--------TAGTTCTTCGTGCTGATTTTTTTTCC--------------------TAC---------TCGCTCAGAGC-------GTATTCCGTGTGAT--GGGGCC---G---------------------TCAGACGATCGCCAGCATTGATAGCGTGCGCGACAAACGAAA-ATCAGG--GAAAATCGAGGAAA-------------------------A-TCGCGAAAAACGAACAACGAACTCAGC---------------------------CAAACAAA---------------------------------CAA------ACATAA-CCAAATA------ACTT-AAG--------------------------------TT-----------------------------------------------AA--GCATAAGCATCTA---A--CACG------------TT-GACTGCATT----------------A-----------------------------T------T-T--T-TCTA--CTAGAGCCCAAGTAAAA--A-------CAACAC----------------CACAAACAACTTAGCGAAAG-------------AGGCGCGCGCGAAAAAGAAAAG-AAATTGTGT-AAAAT-----AAAATA
droMoj3 scaffold_6680:8856285-8856578 - A-----------------G--GCATGAAGTCATA--------GTCGATCTATTTGCCA--------TAGTT-----------C----------------------------------------TTCGCTCAGAGCATTCAGAGTATTCAGTGTGTTGGGGGGCC---G---------------------TCAGACGATCGCCAGCATTGATAGCGAGCGCGACAAACGAAT-CAC----------TCGAGGAAAT--------------------------TCGCGAA-AACGAACAACGAAGTA---------------------------------------------------------------------------------AC-----------------------AAA-------------------------------CC-----------------------------------------------AA------------------A--CTAAACTA-ACTTAAGCT-AAACATATT----------------T-----------------------------C------TTT----AAGG--GAATAATGCAA-TAAATACAAAACGAAAA-----CAAAAT---------GCACAACAACTAAGTGAAAG-------------A--CGCGCGCTATAATAAA----TACTTGCATATATAT-----AAAATA
droGri2 scaffold_15110:11403391-11403726 + A-----------------G--GCATGAAGTCATA--------GTCGATTTATTTGCCA--------TAGTTCTTGTTGC---TTTTTTTTA----TTTTTGCGTTTTTTCTGTACTCGCCTTGGGCGCTCTGAGC-------GTATTCTATGTGAT--GGGGCA---G--------------------ATCAGACGATCGCCAGCTTCGATAGTGTACGCGACAAACGAAA-ATC----------GCGAGGAAAAAC--TCGAAA------CGAAAAAAACTCGCGAAAAACGAACAACGAACTC-------------------------------------------------------------------------------------A-GCCAAAA----TAAAAC-AAA--------------------------------AC-----------------------------------------------AA------------------A--AACAAGCA-ATACTAAAT-AATAT---AAGCATAAA-TCGATTCA-----------------------------T------T-T--C-TTCT--ATAGAGCTTCT---AAAACC-------AAACACACAAAATGCACAACAAAT---------------AAT----------------------------------------------AACAA-----TAAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
C-----------------GA-GTATGAAGTCATA--------GTCACCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCTACC------GATTCGCG--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAC-------------------CGAAGGAACCGAACCG--------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TAT------AACTAA-CCCAATA------CATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GCGAGACGAGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................AACGAAC-------------------CGAAGGAACCGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00310000200000000000
..............................................................................................................................................................................................................................CGAAC-------------------CGAAGGAACCGAACCG--------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00211000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACT.....................................................................................................................................................................................................................1812.00202000000000000000
..................................................................................................................................................................................................................................C-------------------CGAAGGAACCGAACCG--------CCGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201100000000000000
................................................................................................................................................................GGTT---C---------------------TCAGACGATCGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------AAACAC----------------GCGAGACGAGCAGGG...................................................................2411.00100010000000000000
.......................................................................................................................................................................................................................CTCGCAACGAAC-------------------CGAAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
..................................................................................................................................................................................................................................C-------------------CGAAGGAACCGAACCG--------CCGAATCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.............................................................................................................................................................................................................GTTGATAGCGCTCGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
..............................................................................................................................................................................................................................CGAAC-------------------CGAAGGAACCGAACCG--------CCGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
droSec2
C-----------------GA-GTATGAAGTCATA--------GTCACCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCTACC------GATTCGCG--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAC-------------------CGAAGGAACCG-------------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TAT------AACTAA-CCCAATA------CATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GCGAGTCGAGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC----------------GCGAGTCGAGCAGGG...................................................................1811.0010010
...............................................................................................................................................................................................AGACGATCGCCGGCGTTGATAGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.........................................................................................................................................................................................................................CGCAACGAAC-------------------CGAAGGAACCG-------------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
...........................................................................................................................................................................................................................CAACGAAC-------------------CGAAGGAACCG-------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGT..........................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................................................................CGCTCGCAACGAAC-------------------CGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
.........................................................................................................................................................................................................................CGCAACGAAC-------------------CGAAGGAACCG-------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
dm3
C-----------------GA-GTATGAAGTCATA--------GTCATCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCTACC------GATTCGCG--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAA-------------------CGAAGGAACCG-------------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TAT------AACTAATCCCAATA------AATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------CT-T---T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GAGACACAAGCAGGGGAAGT----------------------------------------------AAGCC-----AAAATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................AACGAAA-------------------CGAAGGAACCG-------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000100000000000000000000000000000000000000001001000000000000000000
.........................................................................................................................................................................................................................CGCAACGAAA-------------------CGAAGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AGACGATCGCCGGCGTTGATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000000000
...............................................................................................................................................................................................AGACGATCGCCGGCGTTGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000000000000000
.............................................................................................................................................................................................................................ACGAAA-------------------CGAAGGAACCG-------------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................CTCGCAACGAAA-------------------CGAAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AGGTT---C---------------------TCAGACGATCGCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..........................................................................................................................................................................................................................GCAACGAAA-------------------CGAAGGAACCG-------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................AACGAAA-------------------CGAAGGAACCG-------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TTGATAGCGCTCGCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GATAGCGCTCGCAACGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................A-------------------CGAAGGAACCG-------------CCGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................CGAAA-------------------CGAAGGAACCG-------------CCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------GAGACACAAGCAGGGGA.................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................ATCGCGGCGGGCAAA----AAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................CGCTCGCAACGAAA-------------------CGAAGGAACCG-------------CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................AGCGCTCGCAACGAAA-------------------CGAAGGAACCG-------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGCAGGGGAAGT----------------------------------------------AAGC............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...............................................................................................................................................................................................................................................................CG-------------CCGAATCGAATCC---------------CC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................AACGAAA-------------------CGAAGGAACCG-------------CCGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...............................................................................................................................................................................................AGACGATCGCCGGCGTTGATAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...................................................................................................................................................................................................................AGCGCTCGCAACGAAA-------------------CGAAGGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.................................................................................................................................................................GTT---C---------------------TCAGACGATCGCCGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................AAA-------------------CGAAGGAACCG-------------CCGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------.......................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................GCTCGCAACGAAA-------------------CGAAGGAACCG-------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................................................................................................................................................................................................................CGCAACGAAA-------------------CGAAGGAACCG-------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................G-------------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TA............................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AGACGATCGCCGGCGTTGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ATA--------GTCATCGCGGCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-T---T-T----TCGA--GCAGAGTTCAA---A....................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................CGCG--GAGGTT---C---------------------TCAGACGATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................CGCAACGAAA-------------------CGAAGGAACCG-------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................GCGGGCAAA----AAGAATC-----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
C-----------------GA-GTATGAAGTCATA--------GTCATCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCAACC------GATTCGCG--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAC-------------------CGAAGGAACCG-------------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TAT------AACTAA-CCCAATA------AATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GCGAAACAAGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA-------AAACAC----------------GCGAAACAAGCAGG....................................................................2411.0011000000
................................................................................................................................................................................................................................................................G-------------CCGAATCGAATCC---------------CCTG----G...................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.........................................................................................................................................................................................................................CGCAACGAAC-------------------CGAAGGAACCG-------------CCGAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA--GCAGAGTTCAA---AATGCA-------........................................................................................................2011.0010000010
......................................................................................................................................................................................................................GCTCGCAACGAAC-------------------CGAAGGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AA-CCCAATA------AATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CG...............................................................................................................................................................................................................................2411.0011000000
droYak3
C-----------------GA-GTATGAAGTCATA--------GTCATCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCAACC------GATTCGCG--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAC-------------------CGAAGGAACCG-------------CCGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------TAT------AACTAA-CCCAATA------AATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATCT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GCGACACAAGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................AGACGATCGCCGGCGTTGATAGCGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AATA------AATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGT..........................................................................................................................................................................................................................2411.00100000010000
droEug1
C-----------------GA-GTATGAAGTCATA--------GTC---GCGGCGGGCAAA----AAGCGTT-----------C----------------------------------------TCCGTTTTGAAAATCTACC------GATTCGCA--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAA------T------------CGAAGGAATCG-------------CCGAATCGAATCC---------------CCT------------------TTG-----------C------------------------------------------TCTAACT--AACTAA-CCCAATA------AATT-AAAT-------------------------------CC-----------------------------------------------GA------------------C--CGCGAGTG-ACTCAATTT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCA-------AAACAC----------------GCGAAACGGGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATASizeHit CountTotal NormTotal
No Reads
droBia1
C-----------------GA-GTATGAAGTCATA--------GTGATCGCGGCGGGCAAA----AAGAATT-----------C----------------------------------------TCCTATTCGAAAATCTACC------GATTCGCA--GCGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGTTCGCAACGAAA------T-------------------------------------CGAAACGAATCC---------------CCTG----GC------------TG-----------C------------------------------------------CCT------AACTAA-CCCGACA------AATT-TTGT---------A------------CTTACAAAGAC-----------------------------------------------GC-A----------------A--CGCGAGTG-ACTCGTTCT-AATAGTTCC----------------A-----------------------------C------T-T----TCGA--GCAGAGTTCAA---AATGCC-------AAGCAC----------------GCGAAACAAGCAGGGGAAAT----------------------------------------------AAGCCAAACAAAAATASizeHit CountTotal NormTotal
No Reads
droTak1
C-----------------GA-GTATGAAGTCATA--------G-------------CAAAAT--AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCTACC------GATTCGCA--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGATCGCAACGAAA------T-------------------------------------CGAAACG-ATCC--------------------------------------------------------------------------------------------------------------CCAATA------AATT------------------------------------TT-----------------------------------------------TA------------------A--CGCGAGTG-ACTCAATTT-AATAGTTCT-------------------------------------------------TTACA-T----TCGAA-ACAGAGTTCAA---AATGCA-------AAACAC----------------GCGAAATAAGCAGGGGAAAT------------------------------AA----TAGTAACCAATAAAA-----AAACTASizeHit CountTotal NormTotal
No Reads
droEle1
C-----------------GA-GTATGAAGTCATA--------GTCATCGAGGCAGGCAAAAAAGAAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCAACC------GATTCGCA--GCGGAT---C---------------------TCAGACGATCGCCGGCATTGATAGCGTTCGCAACGAAT-------------------C------------------------CGAATCGAATCC---------------CCTGCCTAGT--------------------------------------------------------------------TAT------AG------CCAATA------AATTTAAAT-------------------------------CC-----------------------------------------------GACT----------------C--CGCGAGTG-ACTCAATTT-TATAATACT----------------A-----------------------------CTAATACT-T----TCAAA-ACAGAGTTCAA---AATGCA-------AAGCAC----------------GCGAAATAAGCAGGGGAAAT----------------------------------------------AAGCC-----AAAATASizeHit CountTotal NormTotal
No Reads
droRho1
C-----------------GA-GTATGAAGTCATA--------GTCATCGAGGCGGGCAAAAA--AAGAATT-----------C----------------------------------------TCCGATTCGAAAACCAACC------GATTCGCA--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAA------T------------CGAAGGAACCGAATCGCATCGAAT-CGAATCGAATCC---------------CCTGCTTAGT--------------------------------------------------------------------TAT------AG------CCAATA------AATC-AAGT---------T---------------------CC-----------------------------------------------AA------------------C--CGCGAGTG-ACTCAATTTTTATAACACC----------------A-----------------------------C------T-T----TCAA--ACAGAGTTCAA---AATGCA-------AAACAC----------------GCGAAATAAGTAGGGGAAGC----------------------------------------------AAACC-----AAAATASizeHit CountTotal NormTotal
No Reads
droFic1
C-----------------GA-GTATGAAGTCATA--------GTC---GCGGCGGGCAAAA---AAGAATT-----------C----------------------------------------TCCGTTTCGAAAATCAACC------GATTCGCA--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAA------G------------CTAAGGAACCGAATCGAATCGAAT-TGAATCGAATCC---------------CCTG----GC--------------------------------------------------------------------CAC------AACTAA-CCCAATAATAAAAAATT-AAAT-------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCAATTT-AATAGTGCC----------------T-----------------------------T------T-T----TCGAAAGCAGAGTTCAA---AATGCA-------AAACAC----------------GCGAAACAAGCAGGGGAAAT----------------------------------------------AAGCC-----GAAATASizeHit CountTotal NormTotal
No Reads
droKik1
C-----------------GA-GTATGAAGTCATA--------GTCG-------------------AGAATT-----------G----------------------------------------TCCGTTTCGAAAATCAACC------GATTCGCA--GAGGTT---C---------------------TCAGACGATCGCCGGCGTTGATAGCGTTCGCAACGATCCGAA-ATC-------------------------------GAAA-CGAAGCAAATCCTCCATA-TAGCTC--TCTG----GC------------TATAGATATAGCGAC-----------------------------------------TATAACTATAACTAA-CCCAATA------AATT-AAG--------------------------------CC-----------------------------------------------GA------------------A--CGCGAGTG-ACTCGATTG-TAAAGTCTA-----AAAGTC-A---T-----------------------------CT-T---C-TTCCCCCGA--GCAGAGTTCAA---AATGCA-------CAACAC----------------GCGAAATAACCCGGCATAGG----------------------------------------------TAACA-----TCAACGSizeHit CountTotal NormTotal
No Reads
droAna3
C-----------------GC-CTATGAAGTCATA----CGCAGT---------------------CGAATT-----------G----------------------------------------AACGTTTCGAAAATGTACC------GATTCGGT--GAGGTTCTTC---------------------TCAGACGATCTCCGGCGTTGATAGCGCTCGCAGCGAAA-----ATCGAAAT------T------------------------CAAATCGAAGA---------------AT-----A-ACACA--TTACCTTTA-----------GTCGAACGAACCG-----T------------A----GAAACTAGCG------AACTAA-CCCAATA------AATT-ACG--------------------------------AG-----------------------------------------------AG------------------G--CGCGTGTG-ACTCAATTC-TAAAGTCTA----------------A-----------------------------T------C-C----CAGA--GTAGGGTTCAC---AATGCA-------GAGCCA----------------ACAGAGTAACCACTAAAAGG----------------------------------------------AAGAC-----AACATASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TAAAGTCTA----------------A-----------------------------T------C-C----CAGA--GTAGGGT............................................................................................................................2511.001010000
...................................................................................................................................................................................................................................................................................TCGAAGA---------------AT-----A-ACACA--TTACCTTTA-----------GTC......................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAC---AATGCA-------GAGCCA----------------ACAGAGT...........................................................................2511.001001000
droBip1
C-----------------GC-GTATGAAGTCATACATACGTAGT---CGAATTG-----------AACGTT-----------C----------------------------------------AACGTTTCGAAAATCTACC------GATTCGCT--GAGGTTCTTC---------------------TCAGACGATCTCCGGCGTTGATAGCGCTCGCAGCGAATAAAAAATCGAAAT------C------------------------CAAATCGAAGA---------------AT-----A-ACAAACCTTACCTTTA-----------GTCGAACGAACCGAACCCT------------A----GAAAGTAGGA------AACTAA-CCCAATA------ATTT-ACG--------------------------------AC-----------------------------------------------GG------------------G--CGCGTGTG-ACTCAATTT-TTAAGTCTA----------------A-----------------------------T------C-T----CAGA--GTAGGGTTCAA---AATGCA-------CAGCCA----------------TCAGAGTAACCACTAAAAGG----------------------------------------------AAGAC-----AAAATASizeHit CountTotal NormTotal
No Reads
dp5
TAGAGTAGAGCAGAGCAAAA-GCATGAAGTCATT--------TC----GCATTTC-----------GTAT----GGTGT---TTTTTTTTCAAATTTTATGCG-----------------------------A----GTACC------GATCTGTA--GAGCCG---TATAACCCGTAGAACCCGTAGAACAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAAGAGG-AAC-----GCAAATCGAGGAA----------------------ACGAAGA---------------ACA------GC------------CAGAGCTATAACGATCGAACGACCAGCACCCCCCACGCCCCCCTCGAACGAAACCCCAT------AACTAA-CCCACAA------AAGC-AAAA------------------------------------------------------------------------------------GCAAAACCCCCCAACAAAACGCGTCTCCTCTATATCT-ATCTCTCTC---------TC-----ACTCTCTGTCTCTGTCTCTGTCGCCCGTGTCTGTCGTGTT----CCGT--GTAGAGTTCAA---AATGTA-------CAACAA----------------GCTAAAACAATA--AAAAATAAACTAGAGAAAGA-GA--GAGAGAAACCGAATCGACACAAAAACAAAAAC----AAAAACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................CAAATCGAGGAA----------------------ACGAAGA---------------AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................TATAACGATCGAACGACCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................................................A----------------------ACGAAGA---------------ACA------GC------------CAGAGCTAT.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................................................................................................GAAGA---------------ACA------GC------------CAGAGCTATAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
..........................AAGTCATT--------TC----GCATTTC-----------GTAT----GGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................................................................................................................................GTACC------GATCTGTA--GAGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000001
droWil2
--------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCTC---G---------------------TCAGACGATCGCCGGCGTTGATAGCGCTCGCAACGAAA-------------------CAAA--AATCG-------------C-AAAACGAACCA---------------CA------AC--------------------------------------------------------------------AAA------AACCAA-AATAAAA------AAAA-AAAACAAAACGAACCCAAAAACTAAC--------AATTTTTTTTTTGTATTCTTTTTTTTTTGTGTGCTTGTCTCTTGGAAGTTGA------------------------------------------------------------------------------------------------------A-A----ACAA--GAAAAAAATAA---AACACA-------AAATGT---------ACATCAAGTAAAGCTAACT--TAAAGG----------AG-AAGCGCGCGCG--------------------TGCAAAT-----AGAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTGTGTGCTTGTCTCTTGGA............................................................................................................................................................................................................................................................2611.00100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTGCTTGTCTCTTGGAAGT.........................................................................................................................................................................................................................................................2311.00100010
...............................................................................................................................................................................................AGACGATCGCCGGCGTTGATAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------ACATCAAGTAAAGCTAACT--....................................................................2120.50101000
droVir3
C-----------------GAGGCATGAAGTCATA--------GTCGATTTATTTGCCA--------TAGTTCTTCGTGCTGATTTTTTTTCC--------------------TAC---------TCGCTCAGAGC-------GTATTCCGTGTGAT--GGGGCC---G---------------------TCAGACGATCGCCAGCATTGATAGCGTGCGCGACAAACGAAA-ATCAGG--GAAAATCGAGGAAA-------------------------A-TCGCGAAAAACGAACAACGAACTCAGC---------------------------CAAACAAA---------------------------------CAA------ACATAA-CCAAATA------ACTT-AAG--------------------------------TT-----------------------------------------------AA--GCATAAGCATCTA---A--CACG------------TT-GACTGCATT----------------A-----------------------------T------T-T--T-TCTA--CTAGAGCCCAAGTAAAA--A-------CAACAC----------------CACAAACAACTTAGCGAAAG-------------AGGCGCGCGCGAAAAAGAAAAG-AAATTGTGT-AAAAT-----AAAATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................AT--GGGGCC---G---------------------TCAGACGATCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ACGAACAACGAACTCAGC---------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ACGAACAACGAACTCAGC---------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.......................ATGAAGTCATA--------GTCGATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAAAA--A-------CAACAC----------------CACAAACA..........................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---A--CACG------------TT-GACTGCATT----------------A-----------------------------T------T-..............................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................AAA-ATCAGG--GAAAATCGAGGAAA-------------------------A-TC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000100000000000000000000000000000000000000000
droMoj3
A-----------------G--GCATGAAGTCATA--------GTCGATCTATTTGCCA--------TAGTT-----------C----------------------------------------TTCGCTCAGAGCATTCAGAGTATTCAGTGTGTTGGGGGGCC---G---------------------TCAGACGATCGCCAGCATTGATAGCGAGCGCGACAAACGAAT-CAC----------TCGAGGAAAT--------------------------TCGCGAA-AACGAACAACGAAGTA---------------------------------------------------------------------------------AC-----------------------AAA-------------------------------CC-----------------------------------------------AA------------------A--CTAAACTA-ACTTAAGCT-AAACATATT----------------T-----------------------------C------TTT----AAGG--GAATAATGCAA-TAAATACAAAACGAAAA-----CAAAAT---------GCACAACAACTAAGTGAAAG-------------A--CGCGCGCTATAATAAA----TACTTGCATATATAT-----AAAATASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................GACAAACGAAT-CAC----------TCGAGGAAAT--------------------------TCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
....................................................................................................................................................AGTGTGTTGGGGGGCC---G---------------------TCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100
......................................................................................................................................................................................................................................................CGAGGAAAT--------------------------TCGCGAA-AACGAACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.......................................................................................................................................................................G---------------------TCAGACGATCGCCAGCATTGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droGri2
A-----------------G--GCATGAAGTCATA--------GTCGATTTATTTGCCA--------TAGTTCTTGTTGC---TTTTTTTTA----TTTTTGCGTTTTTTCTGTACTCGCCTTGGGCGCTCTGAGC-------GTATTCTATGTGAT--GGGGCA---G--------------------ATCAGACGATCGCCAGCTTCGATAGTGTACGCGACAAACGAAA-ATC----------GCGAGGAAAAAC--TCGAAA------CGAAAAAAACTCGCGAAAAACGAACAACGAACTC-------------------------------------------------------------------------------------A-GCCAAAA----TAAAAC-AAA--------------------------------AC-----------------------------------------------AA------------------A--AACAAGCA-ATACTAAAT-AATAT---AAGCATAAA-TCGATTCA-----------------------------T------T-T--C-TTCT--ATAGAGCTTCT---AAAACC-------AAACACACAAAATGCACAACAAAT---------------AAT----------------------------------------------AACAA-----TAAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:47 PM