ID:

dsi_22127

 Coordinate:

4:227394-227543 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.7 -15.0 -14.8

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 2l:20878283-20878306 +
  2. 2l:20963638-20963661 -
  3. 2l:21392461-21392484 -
  4. 2l:22089265-22089288 +
  5. 2l:22625202-22625225 +
  6. 2l:22746130-22746153 +
  7. 2r:777805-777828 +
  8. 2r:2775673-2775696 -
  9. 3l:23916834-23916857 +
  10. 4:153156-153179 -
  11. dsi_22127  4:227494-227517 +
  12. 4:498909-498932 +
  13. 4:860677-860700 +
  14. 4:910352-910375 -
  15. x:30412-30435 +
  16. x:20300599-20300622 -
  17. node_8139:3543-3566 -
star

Sense Strand Reads

CGCCAGGAACGCCCTAAAAGGAATGTTCAAGAAATTTCATAATTTGCTGCCTATCATGTAACTTCCCGTTGTTTATTTACTCTATGTAATGTTCTTATTCACTTCTATCGATCTTCTTCCCATACATAAGCTGTTTACTAGGTGCTTTCACTAAGAGTTTCCAGTGTTGGAAGATGAATTCTACTATCTTTATTTAATAGCTCCTTTGAAATTATTGAGGACCTAGGCGGTGACCGATATATGTAAGTTC
**************************************************************....................................................((((((.((((..(((((.((.....((((....)))))).)))))...)))).))))))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
 SRR902008
ovaries
 M023
head
 GSM343915
embryo
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGA............................................................................ 24 0 17 99.24 1687 870 379 179 204 53 0 1 0 0 1
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGAT........................................................................... 25 0 17 9.71 165 3 0 161 0 0 0 1 0 0 0
............................................................................................................................................................................................................TTTGAAATTATTGAGGACCTAGGCGGT................... 27 0 1 8.00 8 0 8 0 0 0 0 0 0 0 0
..................................................................................................................................................TTCACTAAGAGTTTCCAGTGTTGGAAGA............................................................................ 28 0 11 7.64 84 11 44 3 8 17 0 1 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAG............................................................................. 23 0 18 4.11 74 8 1 59 1 1 0 3 1 0 0
..............................................................................................................................................................................................................TGAAATTATTGAGGACCTAGGCGGTGAC................ 28 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAA.............................................................................. 22 0 19 2.89 55 32 7 7 9 0 0 0 0 0 0
.................................................................................................................................................TTTCACTAAGAGTTTCCAGTGTTGGAAGA............................................................................ 29 0 10 2.00 20 5 8 1 1 5 0 0 0 0 0
...................................................................................................................................................TCACTAAGAGTTTCCAGTGTTGGAAGA............................................................................ 27 0 11 1.82 20 4 4 5 3 4 0 0 0 0 0
...............................................................................................................................................................TCCAGTGTTGGAAGATGAATTCTAC.................................................................. 25 0 15 1.73 26 4 0 0 7 4 9 2 0 0 0
.......................TGTTCAAGAAATTTCATAATTTGCT.......................................................................................................................................................................................................... 25 0 6 1.67 10 4 0 0 6 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGA............................................................................... 21 0 19 1.11 21 10 4 3 2 2 0 0 0 0 0
....................................................................................................................................................CACTAAGAGTTTCCAGTGTTGGAAGA............................................................................ 26 0 11 1.09 12 5 3 1 3 0 0 0 0 0 0
......................................................................................................................................................CTAAGATTTTCCAGTGTTGGAAGA............................................................................ 24 1 17 1.06 18 8 6 0 4 0 0 0 0 0 0
..............................................................TTCCCGTTGTTTATTTACTCTATGTAA................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TTTGAAATTATTGAGGACCTAGGCGGTG.................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................CCCATACATAAGCTGTTTACTAGGTG.......................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TTCTTCCCATACATAAGCTGTTTACTA.............................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TACATAAGCTGTTTACTAGGTGCTA....................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TTTGAAATTATTGAGGACCTAGGCGGTGAC................ 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TACTATCTTTATTTAATAGCTCCTTTGA......................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCTAGGCGGTGACCGATATATGTAAGT.. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................CTCTATGTAATGTTCTTATTCACTT.................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGATGA......................................................................... 27 0 16 0.81 13 10 2 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGATG.......................................................................... 26 0 16 0.81 13 1 0 9 0 0 3 0 0 0 0
.................................................................................................................................................TTTCACTAAGAGTTTCCAGTGTTGGA............................................................................... 26 0 11 0.73 8 3 1 0 2 2 0 0 0 0 0
.............................................................................................................................................................TTTCCAGTGTTGGAAGA............................................................................ 17 0 18 0.72 13 0 0 13 0 0 0 0 0 0 0
..............................................................................................................................................TGCTTTCACTAAGAGTTTCCAGTGT................................................................................... 25 0 14 0.71 10 0 0 6 2 2 0 0 0 0 0
..............................................................................................................................................................TTCCAGTGTTGGAAGA............................................................................ 16 0 19 0.68 13 0 0 13 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGAA........................................................................... 25 1 17 0.65 11 0 1 9 1 0 0 0 0 0 0
.......................TGTTCAAGAAATTTCATAATTTGC........................................................................................................................................................................................................... 24 0 7 0.57 4 1 0 0 0 0 0 1 2 0 0
...................................................................................................................................................TCACTAAGAGTTTCCAGTGTTGGA............................................................................... 24 0 12 0.50 6 3 1 0 1 1 0 0 0 0 0
............................................................................................................................................................GTTTCCAGTGTTGGAAGA............................................................................ 18 0 18 0.50 9 0 0 9 0 0 0 0 0 0 0
............................................................................................................................................................GTTTCCAGTGTTGGAAGAT........................................................................... 19 0 18 0.50 9 0 0 9 0 0 0 0 0 0 0
.......................................................................................................................................................TAAGAGTTTCCAGTGTTGGAAGA............................................................................ 23 0 18 0.50 9 1 0 4 3 0 0 1 0 0 0
..............................................................................................................................................................TTCCAGTGTTGGAAGATGAATTCTAC.................................................................. 26 0 15 0.47 7 1 1 0 1 0 4 0 0 0 0
.....................................................................................................................................................ACTAAGAGTTTCCAGTGTTGGAAGA............................................................................ 25 0 14 0.43 6 1 0 4 0 0 0 0 0 0 1
....................................................................................................................................................................TGTTGGAAGATGAATTCTACTATCTT............................................................ 26 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................TAAGAGTTTCCAGTGTTGGAAGAT........................................................................... 24 0 18 0.33 6 0 0 5 0 0 0 1 0 0 0
........................................................................................................................................................AAGAGTTTCCAGTGTTGGAAGA............................................................................ 22 0 18 0.33 6 0 0 6 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGATGAA........................................................................ 28 0 16 0.31 5 5 0 0 0 0 0 0 0 0 0
................................................................................................................................AGCTGTATACTAGGAGGTTT...................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.......................................TAATTTGCTGACTACCATG................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................TAAGAGTTTCCAGTGTTGGAAGATGAA........................................................................ 27 0 17 0.24 4 0 0 2 0 2 0 0 0 0 0
..........................................................................................................................................................GAGTTTCCAGTGTTGGAAGA............................................................................ 20 0 18 0.22 4 0 0 4 0 0 0 0 0 0 0
.....................................................................................................................................................ACTAAGATTTTCCAGTGTTGGAAGA............................................................................ 25 1 14 0.21 3 0 3 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCCAGTGTTGGAAGAT........................................................................... 16 0 19 0.21 4 0 0 4 0 0 0 0 0 0 0
.......................TGTTCAAGAAATTTCATAATGTGCTG......................................................................................................................................................................................................... 26 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................TTCCAGTGTTGGAAGATGAATTCTA................................................................... 25 0 15 0.20 3 0 0 1 2 0 0 0 0 0 0
................................................................................................................................................CTTTCACTAAGAGTTTCCAGTGTTGGAAGA............................................................................ 30 0 10 0.20 2 0 0 0 0 2 0 0 0 0 0
.......................TGTTCAAGAAATTTCATAATTTGCTGC........................................................................................................................................................................................................ 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCCAGTGTTGGAAGATGAATTCTA................................................................... 24 0 15 0.20 3 0 0 0 3 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGAC........................................................................... 25 1 17 0.18 3 0 0 3 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTACCAGTGTTGGAAGA............................................................................ 24 1 17 0.18 3 2 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................AGTGTTGGAAGATGAATTCTACTATC.............................................................. 26 0 12 0.17 2 0 0 0 1 1 0 0 0 0 0
..................................................................................................................................................TTCACTAAGAGTTTCCAGTGTTGGA............................................................................... 25 0 12 0.17 2 0 1 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTTTTGGAAGA............................................................................ 24 1 19 0.16 3 0 0 1 0 1 0 1 0 0 0
.......................................................................................................................................................TAAGAGTTTCCAGTGTTGGAA.............................................................................. 21 0 20 0.15 3 0 1 1 0 1 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGG................................................................................ 20 0 20 0.15 3 1 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................TTCCAGTGTTGGAAGATGAATTCTACT................................................................. 27 0 14 0.14 2 0 0 0 0 0 2 0 0 0 0
.............................................................................................................................................................TTTCCAGTGTTGGAAGATGAATTCTAC.................................................................. 27 0 14 0.14 2 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGATGAAT....................................................................... 29 0 15 0.13 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CCAGTGTTGGAAGATGAATTCTAC.................................................................. 24 0 15 0.13 2 0 0 0 0 0 2 0 0 0 0
......................................................................................................................................................CGAAGAGTTTCCAGTGTTGGAAGAT........................................................................... 25 1 17 0.12 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTTGAAGA............................................................................ 24 1 17 0.12 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTGCCAGTGTTGGAAGA............................................................................ 24 1 17 0.12 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................TAAGAGTTTCCAGTGTTGGAAGATG.......................................................................... 25 0 17 0.12 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTCTCCAGTGTTGGAAGA............................................................................ 24 1 17 0.12 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGAAA.......................................................................... 26 2 17 0.12 2 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGAG........................................................................... 25 1 17 0.12 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................CGAAGAGTTTCCAGTGTTGGAAGA............................................................................ 24 1 17 0.12 2 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCTAGTGTTGGAAGA............................................................................ 24 1 17 0.12 2 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGATA.......................................................................... 26 1 17 0.12 2 0 0 2 0 0 0 0 0 0 0
.......................TGTTCAAGAAATTTCATA................................................................................................................................................................................................................. 18 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................ATAAGAGTTTCCAGTGTTGGAAGA............................................................................ 24 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTCCAGTGTTGGAAGAT........................................................................... 18 0 18 0.11 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGCT........................................................................... 25 1 18 0.11 2 0 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................AGAGTTTCCAGTGTTGGAAGAT........................................................................... 22 0 18 0.11 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGC............................................................................ 24 1 18 0.11 2 0 0 1 1 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGTAAGA............................................................................ 24 1 18 0.11 2 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TCCAGTGTTGGAAGA............................................................................ 15 0 19 0.11 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAT.............................................................................. 22 1 19 0.11 2 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................CCAGTGTTGGAAGAT........................................................................... 15 0 19 0.11 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTT.................................................................................. 18 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
..............................................................................................................................................TGCTTTCACTAAGAGTTTCCAGTGTTGG................................................................................ 28 0 10 0.10 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................TCACTAAGAGTTTCCAGTGTTGGAACA............................................................................ 27 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TTCACTAAGAGTTTCCAGTGTTGGAAGAT........................................................................... 29 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................TGCTTTCACTAAGAGTTTCCAGTGTT.................................................................................. 26 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TCCAGTGTTGGAAGATGAATTCTACTATC.............................................................. 29 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTCACTAAGAGTTTCCAGTGTTGTAAGA............................................................................ 28 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CACTAAGAGTTTCCAGTGTTGGAAG............................................................................. 25 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................TATCGATCCTTTTCCCA................................................................................................................................ 17 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................AGGTGCTTTCACTAAGAGTTTCCAG...................................................................................... 25 0 14 0.07 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TCCAGTGTTGGAAGATGAATTCTACTA................................................................ 27 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CAGTGTTGGAAGATGAATTCTACTAT............................................................... 26 0 14 0.07 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................TGTCCAGTGTTGGAAGATGAATTCTAC.................................................................. 27 1 14 0.07 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................TGCTTTCACTAAGAGTTTCCAGTG.................................................................................... 24 0 14 0.07 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................CAGTGTTGGAAGATGAATTCTAC.................................................................. 23 0 15 0.07 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................TGCTTTCACTAAGAGTTTCCAG...................................................................................... 22 0 15 0.07 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGATGAT........................................................................ 28 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGATGC......................................................................... 27 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGATGAAA....................................................................... 29 1 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TTTCACTAAGAGTTTCCAGTGT................................................................................... 22 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGATGT......................................................................... 27 1 16 0.06 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................TGTTGGAAGATGAATTCTACTATC.............................................................. 24 0 16 0.06 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................GTACACTAAGAGTTTCCAGTGT................................................................................... 22 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTATGAGTTTCCAGTGTTGGAAGA............................................................................ 24 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTCTCCAGTGTTGGAAGAT........................................................................... 25 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTGAGAGTTTCCAGTGTTGGAAGA............................................................................ 24 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTCGAAGA............................................................................ 24 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGAAAT......................................................................... 27 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................TAAGAGTTTCCAGTGTTGGAAGATGA......................................................................... 26 0 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTTCAGTGTTGGAAGA............................................................................ 24 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................AGAGTTTCCAGTGTTGGAAGATGAA........................................................................ 25 0 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CAAAGAGTTTCCAGTGTTGGAAGAT........................................................................... 25 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGACGA............................................................................ 24 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAACAGTTTCCAGTGTTGGAAGA............................................................................ 24 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................GTTTCCAGTGTTGGAAGATGA......................................................................... 21 0 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTGCAGTGTTGGAAGA............................................................................ 24 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GCTTTCACTAAGAGTT........................................................................................... 16 0 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CCAAGAGTCTCCAGTGTTGGAAGAT........................................................................... 25 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAATAGTTTCCAGTGTTGGAAGA............................................................................ 24 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGAAAA......................................................................... 27 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGATGA............................................................................ 24 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTCCCAGTGTTGGAAGAT........................................................................... 25 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................CCTAAGAGTTTCCAGTGTTGGAAGAC........................................................................... 26 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTCGAAGAT........................................................................... 25 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................AGAGTTTCCAGTGTTGGAAGA............................................................................ 21 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCACTGTTGGAAG............................................................................. 23 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................CAGTGTTGGAAGATGAA........................................................................ 17 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTCCAGTGTTGGAAGATG.......................................................................... 18 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTTTTGGAAGATG.......................................................................... 26 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGG............................................................................ 24 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................GTTTCCAGTGTTGGAAGAA........................................................................... 19 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTCCAGTGTTGGAAGATGA......................................................................... 19 0 18 0.06 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................GTAAGAGTTTCCAGTGTTGGAAGA............................................................................ 24 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................AGTTTCCAGTGTTGGAAGAT........................................................................... 20 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................TAAGAGTTTCCAGTGTTGGAAGATA.......................................................................... 25 1 18 0.06 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................TTCCAGTGTTGGAAGATGAT........................................................................ 20 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGCA........................................................................... 25 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTCCAGTGTTGGAAGATGAA........................................................................ 20 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................TTTTCCAGTGTTGGAAGA............................................................................ 18 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................AAGAGTTTCCAGTGTTGGAAGAT........................................................................... 23 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TCCAGTGTTGGAAGATGA......................................................................... 18 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGGC........................................................................... 25 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAAGCC........................................................................... 25 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................CTAGTTTCCAGTGTTGGAAGA............................................................................ 21 2 18 0.06 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTGGAACA............................................................................ 24 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTACCAGTGTTGGAAG............................................................................. 23 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTTAGAAGA............................................................................ 24 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................AGTTTCCAGTGTTGGAAGA............................................................................ 19 0 18 0.06 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................TTCCAGTGTTGGAAGATGAG........................................................................ 20 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TTCACTAAGAGTTTCCAGT..................................................................................... 19 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCGGTGTTGGAAGA............................................................................ 24 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................ACAGTTTCCAGTGTTGGAAG............................................................................. 20 1 19 0.05 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................TTTCCAGTGTTGGAAG............................................................................. 16 0 19 0.05 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................AAGAGTTTCCAGTGTTGGAAG............................................................................. 21 0 19 0.05 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................AGAGTTTCCAGTGTTGGAAG............................................................................. 20 0 19 0.05 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTCCAGTGTTGGAAGAT........................................................................... 17 0 19 0.05 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................TCTATCGATCGACTCCCCA................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GTTTATTTGATAGGTCCTTT........................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................TTTCCAGTGTTGGTA.............................................................................. 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................ATAAGAGTTTCCAGTGTTGGAA.............................................................................. 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................CCAGTGTTGGAAGAA........................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAATGTTGGAAGA............................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AGTTTCCAGTGTTGGA............................................................................... 16 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................GAACTTTCACTAAGAGTT........................................................................................... 18 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TGCAGTGTTGGAAGAT........................................................................... 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGT................................................................................... 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGTCGGAAGA............................................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTAAGAGTTTCCAGTGA................................................................................... 17 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CCTAGTTTCCAGTGTTGGAA.............................................................................. 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......ACCGCCCTAAGAGGA.................................................................................................................................................................................................................................... 15 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................ATGTTCAAGACTTTTCAT.................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................GTAAGAGTTTCCAGTGTTGGAA.............................................................................. 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCCAGTGTTGGAAGAA........................................................................... 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GCGGTCCTTGCGGGATTTTCCTTACAAGTTCTTTAAAGTATTAAACGACGGATAGTACATTGAAGGGCAACAAATAAATGAGATACATTACAAGAATAAGTGAAGATAGCTAGAAGAAGGGTATGTATTCGACAAATGATCCACGAAAGTGATTCTCAAAGGTCACAACCTTCTACTTAAGATGATAGAAATAAATTATCGAGGAAACTTTAATAACTCCTGGATCCGCCACTGGCTATATACATTCAAG
****************************************************************************....................................................((((((.((((..(((((.((.....((((....)))))).)))))...)))).))))))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 SRR902008
ovaries
 SRR902009
testis
 M025
embryo
 O002
Head
 GSM343915
embryo
 M023
head
...............................................................AGGGCAACAAATAAATGAGATACATT................................................................................................................................................................. 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AGGGCAACAAATAAATGAGATACATTAC............................................................................................................................................................... 28 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AGATAGCTAGAAGAAGGGTATGTATT......................................................................................................................... 26 0 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................AAGATAGCTAGAAGAAGGGTATGTAT.......................................................................................................................... 26 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0
................TTTCCTGACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 25 1 9 2.78 25 12 2 0 11 0 0 0 0 0 0 0 0 0
........................................................................................................GATAGCTAGAAGAAGGGTATGTATT......................................................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GAAGATAGCTAGAAGAAGGGTATGTATT......................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AAGATAGCTAGAAGAAGGGTATGTATT......................................................................................................................... 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................ATACATTACAAGAATAAGTGAAGATAGCT........................................................................................................................................... 29 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGATCCACGAAAGTGATTCTCAAA.......................................................................................... 24 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0
.......................................................................................................AGATAGCTAGAAGAAGGGTATGTAT.......................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
............GGATTTTCCTGACAAGTTCTTTAAAGT................................................................................................................................................................................................................... 27 1 5 1.60 8 1 0 0 7 0 0 0 0 0 0 0 0 0
............................................................................................................................................CCACGAAAGTGATTCTCAAA.......................................................................................... 20 0 14 1.36 19 0 0 0 0 8 0 10 0 0 1 0 0 0
...........................GTTCTTTCAAGTGTTAACCGA.......................................................................................................................................................................................................... 21 3 15 1.27 19 0 0 0 0 0 18 0 0 0 0 0 0 1
.........................................................................................................................................GATCCACGAAAGTGATTCTCAAA.......................................................................................... 23 0 4 1.25 5 0 0 0 0 4 1 0 0 0 0 0 0 0
.............GATTTTCCTTACAAGTTCTT......................................................................................................................................................................................................................... 20 0 7 1.14 8 0 0 1 0 0 0 7 0 0 0 0 0 0
...............................................................AGGGCAACAAATAAATGAGATACAT.................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GAAGATAGCTAGAAGAAGGGT................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................ATAGCTAGAAGAAGGGTATGTATT......................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ACATTACAAGAATAAGTGAAGATAGCT........................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................CAAATGATCCACGAAAGTGATTCTCAAA.......................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................CGGATAGTACATTGAAGGGCAACAAAT............................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAGTGAAGATAGCTAGAAGAAGGGTAT.............................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................AAGTGAAGATAGCTAGAAGAAGGGTATGT............................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TGAGATACATTACAAGAAT......................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................ACGGATAGTACATTGAAGGGCAACAAAT............................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................TTTCCTTACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 25 0 9 1.00 9 5 1 1 0 0 0 0 1 0 1 0 0 0
.....................................................................................................GAAGATAGCTAGAAGAAGGGTATGTAT.......................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATGATCCACGAAAGTGATTCTCAAA.......................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................GAAGATAGCTAGAAGAAGGGTATGT............................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................AACGACGGATAGTACAGTGT........................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................TGAAGATAGCTAGAAGAAGGGTATGTATT......................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TGAAGATAGCTAGAAGAAGGGTATGTAT.......................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................AACGACGGATAGTACAGTGTT.......................................................................................................................................................................................... 21 3 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0
...........................................................................................................AGCTAGAAGAAGGGTATGTATTCGA...................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGAAAGTGATTCTCAAA.......................................................................................... 17 0 17 0.88 15 0 0 0 0 15 0 0 0 0 0 0 0 0
..............................................................................................................................................ACGAAAGTGATTCTCAAA.......................................................................................... 18 0 15 0.80 12 0 0 0 0 12 0 0 0 0 0 0 0 0
...........................................................................................................................................TCCACGAAAGTGATTCTCAAA.......................................................................................... 21 0 14 0.79 11 0 0 0 0 1 0 0 0 0 0 10 0 0
................TTTCCTGACAAGTTCTTTAAAGTATT................................................................................................................................................................................................................ 26 1 9 0.78 7 2 0 0 5 0 0 0 0 0 0 0 0 0
.............................TCTTTAAAGTATTAAACGACGGAT..................................................................................................................................................................................................... 24 0 6 0.67 4 1 0 0 1 1 1 0 0 0 0 0 0 0
..............................CTTTAAAGTATTAAACGACGGAT..................................................................................................................................................................................................... 23 0 6 0.50 3 1 0 0 0 1 0 0 1 0 0 0 0 0
..............ATTTTTCTTACAAGTTCTTTAAAGT................................................................................................................................................................................................................... 25 1 6 0.50 3 0 1 0 2 0 0 0 0 0 0 0 0 0
...............TTTTCCTGACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 26 1 5 0.40 2 1 0 0 1 0 0 0 0 0 0 0 0 0
..................TCCTTACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 23 0 9 0.33 3 0 0 0 0 0 0 0 0 0 3 0 0 0
.................TTCCTTACAAGTTCTTTAAAGTATT................................................................................................................................................................................................................ 25 0 9 0.33 3 0 1 0 1 0 0 0 1 0 0 0 0 0
.................................TAAAGTATTAAACGACGGAT..................................................................................................................................................................................................... 20 0 8 0.25 2 0 1 0 1 0 0 0 0 0 0 0 0 0
.................................TAAAGTATTAAACGACGGATAT................................................................................................................................................................................................... 22 1 8 0.25 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.................TTCCTGACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 24 1 9 0.22 2 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................CACGAAAGTGATTCTCAAA.......................................................................................... 19 0 14 0.21 3 0 1 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................CGGTCACAACCTTCTACTTAAGATGAT................................................................ 27 1 14 0.21 3 0 1 0 0 0 0 0 0 0 2 0 0 0
................TTTTCTTACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 25 1 10 0.20 2 0 0 1 1 0 0 0 0 0 0 0 0 0
.............GATTTTCCTGACAAGTTCTTTAAAGT................................................................................................................................................................................................................... 26 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GATCCACGAAAGTGATTC............................................................................................... 18 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............ATTTTCCTGACAAGTTCTTTAAAGT................................................................................................................................................................................................................... 25 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............ATTTTCCTGACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 27 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............TTTTCCTGACAAGTTCTTTAAAGT................................................................................................................................................................................................................... 24 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............ATTTTCCTTACAAGTTCTTTAAAGT................................................................................................................................................................................................................... 25 0 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............GGATTTTCCTGACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 29 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............TTTTCCTTACAAGTTCTTTAAAGT................................................................................................................................................................................................................... 24 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................AAATTTAAAGTATTAAACGACGGAT..................................................................................................................................................................................................... 25 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................TTTAAAGTATTAAACGACGGAT..................................................................................................................................................................................................... 22 0 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................TTAAAGTATTAAACGACGGAT..................................................................................................................................................................................................... 21 0 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................TCTTTAAAGTATTAAACGACGGATA.................................................................................................................................................................................................... 25 0 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAAAATGCTCCACGAAAGT.................................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CACAACCTTCTACTTAAGATGATAGA............................................................. 26 0 13 0.15 2 0 1 0 1 0 0 0 0 0 0 0 0 0
....................................AGTATTAAACGACGGATATT.................................................................................................................................................................................................. 20 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................TAAAGTATTAAACGACGGATAGT.................................................................................................................................................................................................. 23 0 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................AGGGCAACAAATAAATGTGATACATTAC............................................................................................................................................................... 28 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGGTCACAACCTTCTACTTAAGATGAT................................................................ 27 1 14 0.14 2 0 0 0 0 0 0 0 0 0 2 0 0 0
..................................................................................................AGTGAAGATAGCTAGACGAAGGGT................................................................................................................................ 24 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAAAGTATTAAAAGACGGATAGT.................................................................................................................................................................................................. 23 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................TAAAGTATTTAACGACGGAT..................................................................................................................................................................................................... 20 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................TCCTTACAAGTTCTTTAAAGTATTA............................................................................................................................................................................................................... 25 0 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................TTCCTGACAAGTTCTTTAAAGTATTAA.............................................................................................................................................................................................................. 27 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................ATAAAGTATTAAACGACGGAT..................................................................................................................................................................................................... 21 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AGATAGCTAGAGGAAGGGTATGTATT......................................................................................................................... 26 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................TTCCTTACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 24 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................TTTCCTTACAAGTTCTTTAAAGTATT................................................................................................................................................................................................................ 26 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................TCCTTACAAGTTCTTTAAAGTATT................................................................................................................................................................................................................ 24 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACGAAAGTGATTCTCAAAGGTCACAACCTT.............................................................................. 30 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................AAGTATTAAACGACGGATAT................................................................................................................................................................................................... 20 1 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................CCTTACAAGTTCTTTAAAGTATT................................................................................................................................................................................................................ 23 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................CTTACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 21 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AAAGTGATTCTCAAA.......................................................................................... 15 0 18 0.11 2 0 0 1 0 1 0 0 0 0 0 0 0 0
................TTTTCTTACAAGTTCTTTAAAGTATT................................................................................................................................................................................................................ 26 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGGGTATGTATTCGACAA................................................................................................................... 18 0 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................AGGGTATGTATTCGACAAA.................................................................................................................. 19 0 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................AGTGATTCTCAAAGGTCACAACCTTCT............................................................................ 27 0 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................GAAAGTGATTCTCAAAGGTCACAACCT............................................................................... 27 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................TTCTTACAAGTTCTTTAAAGTATT................................................................................................................................................................................................................ 24 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................TTTCCTTACAAGTTCTTTAAAATAT................................................................................................................................................................................................................. 25 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................TTCTTACAAGTTCTTTAAAGTAT................................................................................................................................................................................................................. 23 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................ATTAAACGACGGATAG................................................................................................................................................................................................... 16 0 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................AGTGATTCTCAAAGGTCACAACCTT.............................................................................. 25 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ATCCACGAAAGTGATTCTCAAAGGT....................................................................................... 25 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................AAGTGATTCTCAAAGGTCACAACCT............................................................................... 25 0 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................AAGGGTATGTATTCGAC..................................................................................................................... 17 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................ATCCACGAAAGTGATTCTCAAA.......................................................................................... 22 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CGAAAGTGATTCTCAAAGGTCACAAC................................................................................. 26 0 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................CCACGAAAGTGATTCTCAAAGGT....................................................................................... 23 0 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................GGTCACAACCTTCTACTTAAGATGAT................................................................ 26 0 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................AAATGGTCACAACCTTCTACTTAAGAT................................................................... 27 2 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CACAACCTTCTACTTAAGATGAT................................................................ 23 0 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................CGAAGGATAGGAGATTGAA.......................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................CGAAAGTGATTCTCAAAGGTCACA................................................................................... 24 0 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................GAAAGTGATTCTCAAA.......................................................................................... 16 0 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CAACCTTCTACTTAAGATGAT................................................................ 21 0 18 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................AGGTCACAACCTTCTACT......................................................................... 18 0 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................GCCACGAAAGTAACTCTCA............................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CCACGAAAGTAACTCTC............................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:227344-227593 + dsi_22127 CG---------------CCAGGAAC---------GCCCTAAAAGGAATGTTCAAGAAATTTCATAATTTGCTGC-------CTATCATGTAACTTCCCGTTGTTTATTTACTCTATGTAATGTTCTTATTC-------------------ACTTCTATCGATCTTCTTCCCATACATAAGCTGTTTACTAGGTGCTTTCACTA---AGAGTTTCCA-GTGTT-GGAAGATGAATTCTACTATCTTTATTTAATAGCTCCTTTGAAATTATTGAGGACCTAGGCGGTGACCGATATATGTAAGTTC
droSec2 scaffold_30:39614-39867 + CG---------------CCTGATAC---------GCCCTAAAAGGAATGTTCAAGAAATTTCATAATTTGCTGC-------CTATCATGTAACTTCTCGTTGATTATCTACTCTATGTAATGCACTTATTC-------------------ACTTCTATCGATCTGCATTCCCTACTAAGGCGGTTAACTAGGCGCTTTCACTAGAGAGTGTT-CCATGTGTTCGGAAGATGAATTCTACTATCTTTATTTAATAGTTCCTTTGAAATTATTAAGGACCTAGGCGGTGACCGATATATGTAAGTTC
dm3 chr3L:24150530-24150746 + CG---------------CCAGGGTAGGGCCCCTGGACCTAAAAGGAATGTTCAAGAAATTTCATAATTTGCTGC-------CTATCACGTAACTTCCCGTTGTTTATTTACACTATGTACTGCTCTTTTTCTCTTAGTCAATCTGCCTCCAATTCTATCGATTTTCTTCAAATACATAAGTTCTTTGATAAGTGCTTTCACTA---AGTGTTTCCA-GTGTT-GGAAGATGAATTCAACTAT---------------------------------------------------------CT----
droEre2 scaffold_4845:1661294-1661348 - AC---------------T-------------------------------------------------------------------TAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCACTTTGAAATTATTGAAGTCTTAGACGGTAACCGATATAACTAG----
droYak3 v2_chr2L_random_011:22884-22983 - AACGC---------------------------------------------CCAAAAACCGCCCAAAGCTGCTACTCCCACACTATTAAAAAATGTTTTGATATTTTTTCATTTTTTGTATTAGTCTTGTAA-------------------ATTTCTATCG-----------------------------------------------------------------------------------------------------------------------------------------ATTT----
droEug1 scf7180000409551:313358-313412 + AT---------------T-------------------------------------------------------------------CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCCTTTTGAAATAGTAAAAGTTCTAGAAGGTGACAGGTGCATATAA----
droBia1 scf7180000301511:24663-24717 - AT---------------T-------------------------------------------------------------------TAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCCCTTTGAAATAATTGAAGTTTTAGGGGGTGACCGATATATGTTG----
droTak1 scf7180000415138:2569-2663 + ACCATGTGA-----------------CTTCACTAAAC-----------------------------TTCGGGTG------------------------------------------------------------------------------------------ATT--------------------------------------------------------GGCCGAGAAAGT---------TTAGTAAATGGGACTTTTGAAATTCTCGAGGACATTGAGGATGAGCACTATA---------
droEle1 scf7180000490986:9097-9166 + GAAGCTAGATCCTAAATT-------------------------------------------------------------------TAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCCATTTGAAATTATTGAAGTTTTGGAGGGAGACAGATATAAACTA----
droRho1 scf7180000777946:636-703 - AATCCC--------------------------------------------------TTTATCCGTTTCTGTGCT------------------------------------------------------------------------------------------ACTTCCAAGAAATGTTCTGTTGATT---------------------------------------------------------------------------------------------AGGTGCTTACATTAAGAAT----
droFic1 scf7180000454031:16629-16683 + AT---------------T-------------------------------------------------------------------TAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCCGTTTGAAATAATCGAAGTTTTAGAGGGTGACCGATATAAGTTA----
droKik1 scf7180000299997:690-743 - TT-----------------------------------------------------------------------------------TAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTTGAAATAATTGAACTATTAGATGGAGATCGGTACATGTTA----
droBip1 scf7180000395483:4784-4842 - AT---------------G-------------------------------------------------------------------TAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCCTTTTGAAATAGTAAAAGTTCTGGAAGGTGACAGGTACATTTTAAAGT
droPer2 scaffold_4181:1092-1159 - TA---------------C-------------------------------------------------------------------TATATAATGTTTATTTATTTATTTATTTATTTACATATTTATATTC-------------------ATTGCTCTTGCTCTTCCTC----------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004745:3464-3536 + TTCCAC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGTATTGTCTTTTCTTAATATTTCTTGTTT----------------------------TATTAGTGA----
droVir3 scaffold_13052:1668415-1668479 - TTAAAA--------------------------------------------------TATTTTAAAATTTATTGC-------ACATCATGTAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTAATGCACATTTAAGTTATATAA----
droMoj3 scaffold_6482:1798790-1798844 + AT---------------T-------------------------------------------------------------------TAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCATTTGTAGTTACTGAATTGCTAAAAGGTGACCGTTACATGTTG----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CG---------------CCAGGAAC---------GCCCTAAAAGGAATGTTCAAGAAATTTCATAATTTGCTGC-------CTATCATGTAACTTCCCGTTGTTTATTTACTCTATGTAATGTTCTTATTC-------------------ACTTCTATCGATCTTCTTCCCATACATAAGCTGTTTACTAGGTGCTTTCACTA---AGAGTTTCCA-GTGTT-GGAAGATGAATTCTACTATCTTTATTTAATAGCTCCTTTGAAATTATTGAGGACCTAGGCGGTGACCGATATATGTAAGTTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGA............................................................................241799.24168700010087037920453179100000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGAT...........................................................................25179.711650001003000161000000
...................................................................................................................................................................................................................................................................TTTGAAATTATTGAGGACCTAGGCGGT...................2718.00800000008000000000
....................................................................................................................................................................................................TTCACTA---AGAGTTTCCA-GTGTT-GGAAGA............................................................................28117.648400010011448173000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAG.............................................................................23184.1174000300811159010000
.....................................................................................................................................................................................................................................................................TGAAATTATTGAGGACCTAGGCGGTGAC................2814.00400000004000000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAA..............................................................................22192.8955000000327907000000
...................................................................................................................................................................................................TTTCACTA---AGAGTTTCCA-GTGTT-GGAAGA............................................................................29102.002000000058151000000
.....................................................................................................................................................................................................TCACTA---AGAGTTTCCA-GTGTT-GGAAGA............................................................................27111.822000000044345000000
....................................................................................................................................................................................................................TCCA-GTGTT-GGAAGATGAATTCTAC..................................................................25151.732600920040740000000
...............................................TGTTCAAGAAATTTCATAATTTGCT.........................................................................................................................................................................................................................................2561.671000000040600000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGA...............................................................................21191.1121000000104223000000
......................................................................................................................................................................................................CACTA---AGAGTTTCCA-GTGTT-GGAAGA............................................................................26111.091200000053301000000
.............................................................................................TTCCCGTTGTTTATTTACTCTATGTAA.........................................................................................................................................................................................2711.00100000001000000000
...................................................................................................................................................................................................................................................................TTTGAAATTATTGAGGACCTAGGCGGTG..................2811.00100000010000000000
........................................................................................................................................................................CCCATACATAAGCTGTTTACTAGGTG...............................................................................................................2611.00100000001000000000
...................................................................................................................................................................TTCTTCCCATACATAAGCTGTTTACTA...................................................................................................................2711.00100000001000000000
............................................................................................................................................................................TACATAAGCTGTTTACTAGGTGCTA............................................................................................................2511.00100000001000000000
...................................................................................................................................................................................................................................................................TTTGAAATTATTGAGGACCTAGGCGGTGAC................3011.00100000001000000000
............................................................................................................................................................................................................................................TACTATCTTTATTTAATAGCTCCTTTGA.........................................2811.00100000001000000000
...................................................................................................................................................................................................................................................................................ACCTAGGCGGTGACCGATATATGTAAGT..2811.00100000001000000000
..............................................................................................................CTCTATGTAATGTTCTTATTC-------------------ACTT.......................................................................................................................................................2511.00100000001000000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGATGA.........................................................................27160.8113000000102001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGATG..........................................................................26160.811300300010009000000
...................................................................................................................................................................................................TTTCACTA---AGAGTTTCCA-GTGTT-GGA...............................................................................26110.73800000031220000000
..................................................................................................................................................................................................................TTTCCA-GTGTT-GGAAGA............................................................................17180.7213000000000013000000
................................................................................................................................................................................................TGCTTTCACTA---AGAGTTTCCA-GTGT....................................................................................25140.711000000000226000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGA............................................................................16190.6813000000000013000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGAA...........................................................................25170.651100000001109000000
...............................................TGTTCAAGAAATTTCATAATTTGC..........................................................................................................................................................................................................................................2470.57400010010000020000
.....................................................................................................................................................................................................TCACTA---AGAGTTTCCA-GTGTT-GGA...............................................................................24120.50600000031110000000
.................................................................................................................................................................................................................GTTTCCA-GTGTT-GGAAGA............................................................................18180.50900000000009000000
.................................................................................................................................................................................................................GTTTCCA-GTGTT-GGAAGAT...........................................................................19180.50900000000009000000
.........................................................................................................................................................................................................TA---AGAGTTTCCA-GTGTT-GGAAGA............................................................................23180.50900010010304000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGATGAATTCTAC..................................................................26150.47700400011100000000
.......................................................................................................................................................................................................ACTA---AGAGTTTCCA-GTGTT-GGAAGA............................................................................25140.43600000010004100000
..........................................................................................................................................................................................................................TGTT-GGAAGATGAATTCTACTATCTT............................................................2630.33100000000010000000
.........................................................................................................................................................................................................TA---AGAGTTTCCA-GTGTT-GGAAGAT...........................................................................24180.33600010000005000000
..........................................................................................................................................................................................................A---AGAGTTTCCA-GTGTT-GGAAGA............................................................................22180.33600000000006000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGATGAA........................................................................28160.31500000050000000000
.........................................................................................................................................................................................................TA---AGAGTTTCCA-GTGTT-GGAAGATGAA........................................................................27170.24400000000022000000
...............................................................................................................................................................................................................GAGTTTCCA-GTGTT-GGAAGA............................................................................20180.22400000000004000000
....................................................................................................................................................................................................................TCCA-GTGTT-GGAAGAT...........................................................................16190.21400000000004000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGATGAATTCTA...................................................................25150.20300000000201000000
..................................................................................................................................................................................................CTTTCACTA---AGAGTTTCCA-GTGTT-GGAAGA............................................................................30100.20200000000020000000
...............................................TGTTCAAGAAATTTCATAATTTGCTGC-------................................................................................................................................................................................................................................2750.20100000010000000000
....................................................................................................................................................................................................................TCCA-GTGTT-GGAAGATGAATTCTA...................................................................24150.20300000000300000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGAC...........................................................................25170.18300000000003000000
.......................................................................................................................................................................................................................A-GTGTT-GGAAGATGAATTCTACTATC..............................................................26120.17200000000110000000
....................................................................................................................................................................................................TTCACTA---AGAGTTTCCA-GTGTT-GGA...............................................................................25120.17200000001001000000
.........................................................................................................................................................................................................TA---AGAGTTTCCA-GTGTT-GGAA..............................................................................21200.15300000001011000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GG................................................................................20200.15300000010002000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGATGAATTCTACT.................................................................27140.14200200000000000000
..................................................................................................................................................................................................................TTTCCA-GTGTT-GGAAGATGAATTCTAC..................................................................27140.14200100010000000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGATGAAT.......................................................................29150.13200000020000000000
.....................................................................................................................................................................................................................CCA-GTGTT-GGAAGATGAATTCTAC..................................................................24150.13200200000000000000
.........................................................................................................................................................................................................TA---AGAGTTTCCA-GTGTT-GGAAGATG..........................................................................25170.12200000000002000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGAAA..........................................................................26170.12200000010001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGAG...........................................................................25170.12200000000002000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGATA..........................................................................26170.12200000000002000000
...............................................TGTTCAAGAAATTTCATA................................................................................................................................................................................................................................................1890.11100000000001000000
..................................................................................................................................................................................................................TTTCCA-GTGTT-GGAAGAT...........................................................................18180.11200000000002000000
..............................................................................................................................................................................................................AGAGTTTCCA-GTGTT-GGAAGAT...........................................................................22180.11200000000002000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGC............................................................................24180.11200000000101000000
....................................................................................................................................................................................................................TCCA-GTGTT-GGAAGA............................................................................15190.11200000000002000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAT..............................................................................22190.11200000010001000000
.....................................................................................................................................................................................................................CCA-GTGTT-GGAAGAT...........................................................................15190.11200000000002000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-..................................................................................18200.10200000000002000000
................................................................................................................................................................................................TGCTTTCACTA---AGAGTTTCCA-GTGTT-GG................................................................................28100.10100000001000000000
....................................................................................................................................................................................................TTCACTA---AGAGTTTCCA-GTGTT-GGAAGAT...........................................................................29110.09100000001000000000
................................................................................................................................................................................................TGCTTTCACTA---AGAGTTTCCA-GTGTT-..................................................................................26110.09100000000001000000
....................................................................................................................................................................................................................TCCA-GTGTT-GGAAGATGAATTCTACTATC..............................................................29120.08100000010000000000
......................................................................................................................................................................................................CACTA---AGAGTTTCCA-GTGTT-GGAAG.............................................................................25120.08100000000001000000
.............................................................................................................................................................................................AGGTGCTTTCACTA---AGAGTTTCCA-G.......................................................................................25140.07100000000001000000
....................................................................................................................................................................................................................TCCA-GTGTT-GGAAGATGAATTCTACTA................................................................27140.07100000010000000000
......................................................................................................................................................................................................................CA-GTGTT-GGAAGATGAATTCTACTAT...............................................................26140.07100000000010000000
................................................................................................................................................................................................TGCTTTCACTA---AGAGTTTCCA-GTG.....................................................................................24140.07100000000001000000
......................................................................................................................................................................................................................CA-GTGTT-GGAAGATGAATTCTAC..................................................................23150.07100000000100000000
................................................................................................................................................................................................TGCTTTCACTA---AGAGTTTCCA-G.......................................................................................22150.07100000000001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGATGAT........................................................................28160.06100000000001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGATGC.........................................................................27160.06100000000001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGATGAAA.......................................................................29160.06100000010000000000
...................................................................................................................................................................................................TTTCACTA---AGAGTTTCCA-GTGT....................................................................................22160.06100000000001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGATGT.........................................................................27160.06100000000001000000
..........................................................................................................................................................................................................................TGTT-GGAAGATGAATTCTACTATC..............................................................24160.06100000000100000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGAAAT.........................................................................27170.06100000000001000000
.........................................................................................................................................................................................................TA---AGAGTTTCCA-GTGTT-GGAAGATGA.........................................................................26170.06100000000001000000
..............................................................................................................................................................................................................AGAGTTTCCA-GTGTT-GGAAGATGAA........................................................................25170.06100000000001000000
.................................................................................................................................................................................................................GTTTCCA-GTGTT-GGAAGATGA.........................................................................21170.06100000000001000000
.................................................................................................................................................................................................GCTTTCACTA---AGAGTT.............................................................................................16170.06100000000001000000
..............................................................................................................................................................................................................AGAGTTTCCA-GTGTT-GGAAGA............................................................................21180.06100000000001000000
......................................................................................................................................................................................................................CA-GTGTT-GGAAGATGAA........................................................................17180.06100000000001000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGATG..........................................................................18180.06100000000001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGG............................................................................24180.06100000000001000000
.................................................................................................................................................................................................................GTTTCCA-GTGTT-GGAAGAA...........................................................................19180.06100000000001000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGATGA.........................................................................19180.06100000000010000000
................................................................................................................................................................................................................AGTTTCCA-GTGTT-GGAAGAT...........................................................................20180.06100000000001000000
.........................................................................................................................................................................................................TA---AGAGTTTCCA-GTGTT-GGAAGATA..........................................................................25180.06100000000100000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGATGAT........................................................................20180.06100000000001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGCA...........................................................................25180.06100000000001000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGATGAA........................................................................20180.06100000000001000000
..........................................................................................................................................................................................................A---AGAGTTTCCA-GTGTT-GGAAGAT...........................................................................23180.06100000000001000000
....................................................................................................................................................................................................................TCCA-GTGTT-GGAAGATGA.........................................................................18180.06100000000001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGGC...........................................................................25180.06100000000001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGTT-GGAAGCC...........................................................................25180.06100000000001000000
................................................................................................................................................................................................................AGTTTCCA-GTGTT-GGAAGA............................................................................19180.06100000000100000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGATGAG........................................................................20180.06100000000001000000
....................................................................................................................................................................................................TTCACTA---AGAGTTTCCA-GT......................................................................................19180.06100000000001000000
..................................................................................................................................................................................................................TTTCCA-GTGTT-GGAAG.............................................................................16190.05100000000001000000
..........................................................................................................................................................................................................A---AGAGTTTCCA-GTGTT-GGAAG.............................................................................21190.05100000000001000000
..............................................................................................................................................................................................................AGAGTTTCCA-GTGTT-GGAAG.............................................................................20190.05100000000001000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGAT...........................................................................17190.05100000000001000000
.....................................................................................................................................................................................................................CCA-GTGTT-GGAAGAA...........................................................................15200.05100000000001000000
................................................................................................................................................................................................................AGTTTCCA-GTGTT-GGA...............................................................................16200.05100000000001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGT....................................................................................17200.05100000000001000000
........................................................................................................................................................................................................CTA---AGAGTTTCCA-GTGA....................................................................................17200.05100000010000000000
....................................................................................................................................................................................................................TCCA-GTGTT-GGAAGAA...........................................................................16200.05100000000001000000
droSec2
CG---------------CCTGATAC---------GCCCTAAAAGGAATGTTCAAGAAATTTCATAATTTGCTGC-------CTATCATGTAACTTCTCGTTGATTATCTACTCTATGTAATGCACTTATTC-------------------ACTTCTATCGATCTGCATTCCCTACTAAGGCGGTTAACTAGGCGCTTTCACTAGAGAGTGTT-CCATGTGTTCGGAAGATGAATTCTACTATCTTTATTTAATAGTTCCTTTGAAATTATTAAGGACCTAGGCGGTGACCGATATATGTAAGTTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CG---------------CCAGGGTAGGGCCCCTGGACCTAAAAGGAATGTTCAAGAAATTTCATAATTTGCTGC-------CTATCACGTAACTTCCCGTTGTTTATTTACACTATGTACTGCTCTTTTTCTCTTAGTCAATCTGCCTCCAATTCTATCGATTTTCTTCAAATACATAAGTTCTTTGATAAGTGCTTTCACTA---AGTGTTTCCA-GTGTT-GGAAGATGAATTCAACTAT---------------------------------------------------------CT----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................TTCACTA---AGTGTTTCCA-GTGTT-GGAAGA............................................................................28111.00110000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000150000000020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TCACTA---AGTGTTTCCA-GTGTT-GGAAGA............................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................TACATAAGTTCTTTGATAAGTGCTT............................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TAAAAGGAATGTTCAAGAAAT......................................................................................................................................................................................................................................................2127.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002115500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TCCA-GTGTT-GGAAGATGAATTCAAC..................................................................2514.0040000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AAGGAATGTTCAAGAAAT......................................................................................................................................................................................................................................................1863.17190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002047600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TACACTATGTACTGCTCTTTTTCTCT...........................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TTTGATAAGTGCTTTCACTA---AGTGT..............................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TATCACGTAACTTCCCGTTGTTTATT.....................................................................................................................................................................................................2631.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000010000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TGGACCTAAAAGGAATGTTC.............................................................................................................................................................................................................................................................2041.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TACATAAGTTCTTTGATAAGT................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................CCCCTGGACCTAAAAGGAATGTTCAAGA.........................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AAGGAATGTTCAAGAAATTTCATAATT.............................................................................................................................................................................................................................................2731.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TTCCA-GTGTT-GGAAGATGAATTCAAC..................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TCCAATTCTATCGATTTTCTTC........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TATTTACACTATGTACTGCTCTTTTTC..............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CTGCTCTTTTTCTCTTAGTCAAT...................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TCTTTGATAAGTGCTTTCACTA---AGTGTT.............................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................TCGATTTTCTTCAAATACATAAGT............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................CCA-GTGTT-GGAAGATGAATTCAAC..................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................AAGGAATGTTCAAGAAATTTC...................................................................................................................................................................................................................................................2131.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TCTTAGTCAATCTGCCTCCAATTCTA....................................................................................................................................................2631.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CACTA---AGTGTTTCCA-GTGTT-GGAAGATT..........................................................................2811.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................ACTA---AGTGTTTCCA-GTGTT-GGAAGA............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................CACTA---AGTGTTTCCA-GTGTT-GGAAGA............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................AGTGTTTCCA-GTGTT-GGAAGA............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ATACATAAGTTCTTTGATAAG.................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................CTGCTCTTTTTCTCTTAGTC......................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................TGCTTTCACTA---AGTGTTTCCA-GTGT....................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TCTGCCTCCAATTCTATCGATTTTC...........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TGTTTCCA-GTGTT-GGAAGATGAATT......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TGGACCTAAAAGGAATGTTCAAGA.........................................................................................................................................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCTATCGATTTTCTTCAAATACA.................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TA---AGTGTTTCCA-GTGTT-GGAAG.............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AATCTGCCTCCAATTCTATCGATTT.............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CAAATACATAAGTTCTTTGATAAGTGCT.............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TTTGATAAGTGCTTTCACTA---AGTGTT.............................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GTTTCCA-GTGTT-GGAAGATGAATTCAAC..................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTTCATAATTTGCTGC-------CTATCACGT.......................................................................................................................................................................................................................2531.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TCCAATTCTATCGATTTTCTTCAAT.....................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AAAGGAATGTTCAAGAAAT......................................................................................................................................................................................................................................................1960.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TAATTTGCTGC-------CTATCACGTAACT...................................................................................................................................................................................................................2450.6030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TAAAAGGAATGTTCAAGAAATT.....................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CCCTGGACCTAAAAGGAATGT...............................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TTAGTCAATCTGCCTCCAAT........................................................................................................................................................2040.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TTTCCA-GTGTT-GGAAGATGA.........................................................................2050.4020000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................TTTCATAATTTGCTGC-------CTATCACGTA......................................................................................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AAGGAATGTTCAAGAAATT.....................................................................................................................................................................................................................................................1960.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TCAATCTGCCTCCAATTCTATCGAT...............................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AATCTGCCTCCAATTCTATCG.................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................ATTTCATAATTTGCTGC-------CTATCACG........................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TTAGTCAATCTGCCTCCAATTCT.....................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTCTCTTAGTCAATCTGCCTCCAATTC......................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GGACCTAAAAGGAATGTTCAA...........................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TCACGTAACTTCCCGTTGTTT........................................................................................................................................................................................................2130.3310000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TTAGTCAATCTGCCTCCAATTCTATC..................................................................................................................................................2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTCTCTTAGTCAATCTGCCTC............................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................CTCTTAGTCAATCTGCCTCCAATT.......................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................C-------CTATCACGTAACTTCCCGTT............................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TGCTGC-------CTATCACGTAACTTCCC...............................................................................................................................................................................................................2340.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTCTCTTAGTCAATCTGCCTCCAAT........................................................................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................TCCCGTTGTTTATTTACA.................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AATTTGCTGC-------CTATCACGT.......................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................................................................................GTTTCCA-GTGTT-GGAAGATGA.........................................................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
droEre2
AC---------------T-------------------------------------------------------------------TAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCACTTTGAAATTATTGAAGTCTTAGACGGTAACCGATATAACTAG----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
AACGC---------------------------------------------CCAAAAACCGCCCAAAGCTGCTACTCCCACACTATTAAAAAATGTTTTGATATTTTTTCATTTTTTGTATTAGTCTTGTAA-------------------ATTTCTATCG-----------------------------------------------------------------------------------------------------------------------------------------ATTT----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................TTCATTTTTTGTATTAGTCTTG.................................................................................................................................................................................2260.17101000000000
droEug1
AT---------------T-------------------------------------------------------------------CAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCCTTTTGAAATAGTAAAAGTTCTAGAAGGTGACAGGTGCATATAA----SizeHit CountTotal NormTotal
No Reads
droBia1
AT---------------T-------------------------------------------------------------------TAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCCCTTTGAAATAATTGAAGTTTTAGGGGGTGACCGATATATGTTG----SizeHit CountTotal NormTotal
No Reads
droTak1
ACCATGTGA-----------------CTTCACTAAAC-----------------------------TTCGGGTG------------------------------------------------------------------------------------------ATT--------------------------------------------------------GGCCGAGAAAGT---------TTAGTAAATGGGACTTTTGAAATTCTCGAGGACATTGAGGATGAGCACTATA---------SizeHit CountTotal NormTotal
No Reads
droEle1
GAAGCTAGATCCTAAATT-------------------------------------------------------------------TAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCCATTTGAAATTATTGAAGTTTTGGAGGGAGACAGATATAAACTA----SizeHit CountTotal NormTotal
No Reads
droRho1
AATCCC--------------------------------------------------TTTATCCGTTTCTGTGCT------------------------------------------------------------------------------------------ACTTCCAAGAAATGTTCTGTTGATT---------------------------------------------------------------------------------------------AGGTGCTTACATTAAGAAT----SizeHit CountTotal NormTotal
No Reads
droFic1
AT---------------T-------------------------------------------------------------------TAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCCGTTTGAAATAATCGAAGTTTTAGAGGGTGACCGATATAAGTTA----SizeHit CountTotal NormTotal
No Reads
droKik1
TT-----------------------------------------------------------------------------------TAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTTCTTTTGAAATAATTGAACTATTAGATGGAGATCGGTACATGTTA----SizeHit CountTotal NormTotal
No Reads
droBip1
AT---------------G-------------------------------------------------------------------TAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCCTTTTGAAATAGTAAAAGTTCTGGAAGGTGACAGGTACATTTTAAAGTSizeHit CountTotal NormTotal
No Reads
droPer2
TA---------------C-------------------------------------------------------------------TATATAATGTTTATTTATTTATTTATTTATTTACATATTTATATTC-------------------ATTGCTCTTGCTCTTCCTC----------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................C-------------------ATTGCTCTTGCTCTTCCTC----------------------------------------------------------------------------------------------------------------------------------------20140.071010000
droWil2
TTCCAC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGTATTGTCTTTTCTTAATATTTCTTGTTT----------------------------TATTAGTGA----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGT...........................................................................24180.44805030
....................................................................T-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGTATTGTCTTTTCT........................................................26200.30602040
.TCCAC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTA..............................................................................26170.18302010
......................................................................................................................................................................................................................................TAACTGTATTGTCTTTTCTTAATATT.................................................26200.15300030
........................................................TTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTG.....................................................................25160.13201010
.................................................................TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGTATTGTCTTT...........................................................26180.11201010
...CAC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGT...........................................................................27180.11202000
..CCAC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTA..............................................................................25180.11202000
.................................................................TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGTATTGTCTT............................................................25180.11202000
..........................................................................................................................................................................................................................................TGTATTGTCTTTTCTTAATATTTCT..............................................25200.10202000
..................................................................TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGTATTGTCTT............................................................24200.10202000
.................................................................................................................................................................................................................................TATGTTAACTGTATTGTCTTTTCT........................................................24200.10210010
...................................................................TT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGTATTGTCTTTT..........................................................25200.10201010
..........................................................TGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGT....................................................................24160.06100010
............................................................TCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGTATTG................................................................26160.06101000
.......................................................TTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACT......................................................................25160.06101000
.TCCAC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------G................................................................................24170.06101000
.TCCAC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GT...............................................................................25170.06101000
TTCCAC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------G................................................................................25170.06101000
TTCCAC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTA..............................................................................27170.06101000
.TCCAC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATG............................................................................28170.06101000
....AC---------------------------------------------TAAGTTTTGTCCGTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------G................................................................................21180.06101000
............................................................................................................................................................................................................................................TATTGTCTTTTCTTAATATTTCT..............................................23200.05100010
..................................................................TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGTATTGTCTTTTC.........................................................27200.05100010
.........................................................................................................................................................................................................................................................TAATATTTCTTGTTT----------------------------TATTAGTGA----24200.05101000
................................................................................................................................................................................................................................GTATGTTAACTGTATTGTCTTTTCT........................................................25200.05101000
....................................................................T-----------------------------------------------------------------------------------------------------------------------------------------------------------GTATGTTAACTGTATTGTCTTTTC.........................................................25200.05101000
droVir3
TTAAAA--------------------------------------------------TATTTTAAAATTTATTGC-------ACATCATGTAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTTTAATGCACATTTAAGTTATATAA----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AT---------------T-------------------------------------------------------------------TAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACCATTTGTAGTTACTGAATTGCTAAAAGGTGACCGTTACATGTTG----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................TAGTTACTGAATTGCTAAAAGGTGACC...............27100.101100000
........................................................................................................................................................................................................................................................................AGTTACTGAATTGCTAAAAGGTGA.................24100.101100000

Generated: 05/18/2015 at 12:37 PM