ID:

dsi_22118

Coordinate:

3l:15760028-15760177 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-25.1	-25.1	-25.0

Flybase annnotation

CDS [3l_15760178_15760786_-]; exon [3l_15760178_15760786_-]; intron [3l_15753900_15760177_-]

Repeatable elements

Name	Class	Family	Strand
(TTTCC)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAACAGTTACAACAACACTTTTGCCAACCGAGCCGGAACATTCTGTACCCGTAAGTACTTACCCTACGCTAAAAAAAACGTGAAAAGCGAGGAAAAGAAAAGCCAGAAAATGCGGGTGGGAAAGGAAAGGCAAGGCAAGGAATGGAAAAGAAAAAGTTTTGCAACAGCCGATGGGCGGGAAAGTGGGTGGGCATGTCTGTCTCAAAACTGCACTGGGCAAAATAGCAGAGCTAGTTCTTAAGTTTGAAAA ************************************************.......(((((((..((((...............))))............((........))))))))).........(((((((...................))))))).((((((.((..((......))..)).))).)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR902009 testis	M023 head	M024 male body
...............................GCCGGAACATTCTGTACC.........................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0
............................CGAGCCGGAACATTCTGTACCCATGC....................................................................................................................................................................................................	26	3	1	1.00	1	0	0	1	0	0	0	0	0
.........CAACAACACTTTTGCCAACCGAGCCG.......................................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................................GCGGGAAAGTGGGTGGGC..........................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0
.......................................................................................................................................................AAAAGTTTTGCAACAGCCGATGGG...........................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCTAGTTCTTAAGTT......	15	0	1	1.00	1	0	0	0	1	0	0	0	0
..................................................................................ATAAGCGAGGAAAAGAAAC.....................................................................................................................................................	19	2	8	0.38	3	0	0	0	0	0	0	2	1
...........................................................................................................AGAGGCGGGTGGGAAAGGAA...........................................................................................................................	20	2	3	0.33	1	0	0	0	0	0	1	0	0
....................................................................................AAGCGAGGAAAAGAAACC....................................................................................................................................................	18	2	20	0.10	2	0	0	0	0	0	0	1	1
.........CAACTACACTTTTGCCAAGT.............................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

GTTGTCAATGTTGTTGTGAAAACGGTTGGCTCGGCCTTGTAAGACATGGGCATTCATGAATGGGATGCGATTTTTTTTGCACTTTTCGCTCCTTTTCTTTTCGGTCTTTTACGCCCACCCTTTCCTTTCCGTTCCGTTCCTTACCTTTTCTTTTTCAAAACGTTGTCGGCTACCCGCCCTTTCACCCACCCGTACAGACAGAGTTTTGACGTGACCCGTTTTATCGTCTCGATCAAGAATTCAAACTTTT ************************************************.......(((((((..((((...............))))............((........))))))))).........(((((((...................))))))).((((((.((..((......))..)).))).)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo
...................................................................................................................................................................................................................TGAGCAGTTTTATCGTCTGGAT.................	22	3	1	1.00	1	1	0	0	0	0
.........................................AGACATGGGTATTCATG................................................................................................................................................................................................	17	1	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................TTATCGCCGCGATCATGAAT..........	20	3	2	0.50	1	0	1	0	0	0
..........................................................AAGGTGATGCGATTTTTTTT............................................................................................................................................................................	20	2	3	0.33	1	0	0	1	0	0
.....CAATGTTGGTGTGAA......................................................................................................................................................................................................................................	15	1	12	0.25	3	3	0	0	0	0
........................GTTGGCGCTGCCTTGTA.................................................................................................................................................................................................................	17	2	4	0.25	1	0	0	0	1	0
..............................................................................................................................................................ACCGTTGTCGGCTTCCCG..........................................................................	18	2	12	0.08	1	1	0	0	0	0
....................................................................................................................................TCCGTTCCCATCCTTTTCTT..................................................................................................	20	3	12	0.08	1	0	0	0	0	1
...........................................................................................CTATTCTTTTCGGTCT...............................................................................................................................................	16	1	16	0.06	1	0	0	0	1	0
.........CTTGTGGTGAAAACGGTTA..............................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1
......AATGTTGTTGTGGAACC...................................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0
...............................................................................................................................................................ACGTTCTCTGCTGCCCGCC........................................................................	19	3	20	0.05	1	1	0	0	0	0

Generated: 04/23/2015 at 08:43 PM