ID:

dsi_22094

 Coordinate:

3l:563501-563650 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.4 -2.3 -2.2

Flybase annnotation

three_prime_UTR [3l_562938_563594_+]; exon [3l_561033_563594_+]; Antisense to three_prime_UTR [3l_563452_563835_-]; Antisense to exon [3l_563452_563978_-]

No Repeatable elements found

Sense Strand Reads

################################################################################################################################################----------------------------------------------------------------------------------------------------------
AGGGATCAGGTGCTATATACATTTTATTGTGCTGTACTCCCTGAAATATTGGGCATGAAAACAAATTACACATCCAAGATTATAAATTGTTAACTAAACAGTGCGGCTAGGTATGTAATAAAAAGTTTATCGATTATCTATAAATGTAGGTGTGAGTCATACTTCTGTGTTCCTTTTCCTAATTTGTTTCTATCACATAGTTCGATTGCAGATGCGCCAGAGGTGCTGCCATGCGGACTCCGAAGGAGCA
**************************************************************************.......................(((.(((......))))))...........*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 O001
Testis
 SRR902009
testis
 M025
embryo
 O002
Head
 M053
female body
 SRR553488
RT_0-2 hours eggs
...................CATTTTATTGTGCTGTACTCC.................................................................................................................................................................................................................. 21 0 1 10.00 10 2 1 6 0 1 0 0 0 0 0 0 0 0
.....................TTTTATTGTGCTGTACTCCCT................................................................................................................................................................................................................ 21 0 1 9.00 9 1 1 6 0 1 0 0 0 0 0 0 0 0
..........................................................................CAAGATTATAAATTGTTAACT........................................................................................................................................................... 21 0 1 7.00 7 3 1 3 0 0 0 0 0 0 0 0 0 0
............................GTGCTGTACTCCCTGAAATAT......................................................................................................................................................................................................... 21 0 1 6.00 6 1 2 1 0 0 0 0 0 1 0 1 0 0
....................ATTTTATTGTGCTGTACTCCC................................................................................................................................................................................................................. 21 0 1 6.00 6 2 1 2 0 0 0 0 0 0 0 0 1 0
...............................CTGTACTCCCTGAAATATTGG...................................................................................................................................................................................................... 21 0 1 5.00 5 2 1 0 0 1 0 0 0 0 0 0 1 0
..................................................................................TAAATTGTTAACTAAACAGTGCGGC............................................................................................................................................... 25 0 1 4.00 4 0 2 0 1 0 1 0 0 0 0 0 0 0
................ATACATTTTATTGTGCTGTACTCCCT................................................................................................................................................................................................................ 26 0 1 3.00 3 0 0 0 0 0 0 0 0 0 3 0 0 0
.......................................................................................TGTTAACTAAACAGTGCGGCT.............................................................................................................................................. 21 0 1 3.00 3 0 0 1 0 1 0 1 0 0 0 0 0 0
........................TATTGTGCTGTACTCCCTGAA............................................................................................................................................................................................................. 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.....................TTTTATTGTGCTGTACTCCC................................................................................................................................................................................................................. 20 0 1 3.00 3 1 0 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GTAAGTGTGAGTCAT.......................................................................................... 15 1 10 2.50 25 0 1 0 3 0 12 0 0 0 0 0 0 9
..........................................................................................TAACTAAACAGTGCGGCTAGG........................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TTGTTAACTAAACAGTGCGGC............................................................................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TCTGTGTTCCTGATCCTAAT................................................................... 20 2 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
...................CATTTTATTGTGCTGTACTC................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................TTGTGCTGTACTCCCTGAAATATTGGGCAT.................................................................................................................................................................................................. 30 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................ATTGTGCTGTACTCCCTGA.............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................TGCTGTACTCCCTGAAATATT........................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................TACATTTTATTGTGCTGTACTCTCTGAAATA.......................................................................................................................................................................................................... 31 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................ATTTTATTGTGCTGTACTCC.................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GCATGAAAACAAATTACACA.................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................TTATTGTGCTGTACTCCCTGA.............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................TATTGTGCTGTACTCCCTGAAATA.......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................GTTTATCGATTATCTATAAAA......................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGAGGTGCTGCCATGCGGACT........... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTCGATTGCAGATGCGCCAGA............................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CTAGGTATGTAATAAAAAGTT........................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGAGGTATGTAATAAAAAGTT........................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................ATTGTTAACTAAACAGTG................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................TACATTTTATTGTGCTGTACT.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................TAGATTGTTAACTAAACGGTG................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
AGGGATCAGGTGCTATATA....................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................TTATTGTGCTGTACTCCCTGAAATATT........................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AATTGTTAACTAAACAGT.................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................TAAATGTAGGTGTGAGTCATAAA....................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................TTGTTAACTAAACAGTGCGGCT.............................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................TGAAATATTGGGCATGAAAACAAATT....................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................TGTGCTGTACTCCCTGAAATA.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TAAACAGTGCGGCTAGGT.......................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................TGCAGATGCGCCAGAGGTGCT....................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................CTAGGTATGTAATAAAAAGT............................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................TATTGGGCATGAAAACAAATTACACA.................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................TTATTGTGCTGTACTCCCTGAA............................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CAAGATTATAAATTGTTAA............................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................TTACACATCCAAGATTATAAAT................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................TGGGCATGAAAACAAATTAC..................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................ATGTAATAAAAAGTTTATCGA..................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATAGTTCGATTGCAGATGCGC................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGTTCGATTGCAGATGCGCCAGAGG........................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................CATTTTATTGTGCTGTACTCCC................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATAGTTCTATTGCAGA...................................... 16 1 2 1.00 2 0 0 0 1 0 0 0 0 0 0 0 0 1
.....................TTTTATTGTGCTGTACTCCCC................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................TAGGTATGTAATAAAAAGTTT.......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................TTTTATTGTGCTGTACTCCCTGA.............................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................TTGTGCTGTACTCCC................................................................................................................................................................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AACTAAACAGTGCGGCTAGGT.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................TGTAATAAAAAGTTTATCGATTATCTA.............................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................ATGCGGACTCCGAAGGAGC. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................TGGGCATGAAAACAAATTACACATCAA.............................................................................................................................................................................. 27 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................TGCTGTACTCCCTGAAATATTGGGCA................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TATCTATAAATGTAGGTGTGAGTCAAAAA....................................................................................... 29 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................TATTGTGCTGTACTCCCT................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................TAATAAAAAGTTTATCGATTA.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................TTATTGTGCTGTACTCCC................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................TTGTGCTGTACTCCCTGA.............................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................TGTACTCCTTGAAATGTTGGGCGTG................................................................................................................................................................................................. 25 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................TGCGGCTAGGTATGTAATAT................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................AACTAAACAGTGCGGCTAGG........................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGATTGCAGATGCGCCAGAGG........................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GTGCGGCTAGGTATGTAATA.................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................GTGCTGTACTCCCTGAAATATT........................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTTATCGATTATCTATAAAAA........................................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GTAAGTGTGAGTCATA......................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TAAGTGTGAGTCATA......................................................................................... 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGTCCAAGATTATAATTT.................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCCGGCAGAGGTGTTGCCAT.................. 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................GTTCTCCCTGAAATA.......................................................................................................................................................................................................... 15 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................ATGTTGGGCATGAAA.............................................................................................................................................................................................. 15 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............TGTACATTTTATTGTG........................................................................................................................................................................................................................... 16 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................TGTAAGTGTGAGTCA........................................................................................... 15 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TAAGTATGTAATAAAA............................................................................................................................... 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CATAGTTCGATTCCGGA...................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GTAAGTGTGAGTCATAAC....................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................TATTGGGCTTGAAAA............................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

-#########################################################################################################################################################################################################################################################
TCCCTAGTCCACGATATATGTAAAATAACACGACATGAGGGACTTTATAACCCGTACTTTTGTTTAATGTGTAGGTTCTAATATTTAACAATTGATTTGTCACGCCGATCCATACATTATTTTTCAAATAGCTAATAGATATTTACATCCACACTCAGTATGAAGACACAAGGAAAAGGATTAAACAAAGATAGTGTATCAAGCTAACGTCTACGCGGTCTCCACGACGGTACGCCTGAGGCTTCCTCGT
***************************************************************************************************************************.......................(((.(((......))))))...........************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR902009
testis
 O001
Testis
 M025
embryo
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
........................................................................................CAATTGATTTGTCACGCCGAT............................................................................................................................................. 21 0 1 7.00 7 4 1 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ACGCCGATCCATACATTATTT................................................................................................................................ 21 0 1 7.00 7 0 0 1 1 2 0 0 2 0 0 1 0 0
.......................................................................TAGGTTCTAATATTTAACAAT.............................................................................................................................................................. 21 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CTCAGTATGAAGACACAAGGA............................................................................ 21 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................TTGTTTAATGTGTAGGTTCTA.......................................................................................................................................................................... 21 0 1 3.00 3 0 0 1 0 0 1 0 0 1 0 0 0 0
.......................................GGACTTTATAACCCGTACTTT.............................................................................................................................................................................................. 21 0 1 3.00 3 0 0 2 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................CAGTATGAAGACACAAGGAAAAGGATT.................................................................... 27 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................CAGTATGAAGACACAAGGAAAAGGAT..................................................................... 26 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0
........................................................CTTTTGTTTAATGTGTAGGTT............................................................................................................................................................................. 21 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GACGGTACGCCTGAGGCTTC..... 20 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0
..................................................................................................GTCACGCCGATCCATACATT.................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TAACCCGTACTTTTGTTTAAT...................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................TAGTGTATCAAGCTAACGTCT...................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGTCACGCCGATCCATACA...................................................................................................................................... 21 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................ACACTCAGTATGAAGACACAAGGA............................................................................ 24 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0
.................................................................................................................................................................................................................................GACGGTACGCCTGAGGCTTCC.... 21 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0
.....................................AGGGACTTTATAACCCGTACT................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 0 0 1 0 0 0 1 0 0 0 0
..................................................................ATGTGTAGGTTCTAATATTTA................................................................................................................................................................... 21 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0
...................................................................TGTGTAGGTTCTAATATTTAA.................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0
.......................................................................TAGGTTCTAATATTTAACAATTGA........................................................................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TGATTTGTCACGCCGATCCAT......................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................................CCACAAGGAAAAGGATTAAAC................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACATCCACACTCAGTATGAAGACACAA............................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTCAAATAGCTAATAGATATT........................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......GTCCACGATATATGTAAAAT................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................CGTACTTTTGTTTAATGTGTAGGTTC............................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TTTTCAAATAGCTAATAGATA............................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......GTCCACGATATATGTAAAATA............................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTAATGTGTAGGTTCTAATATTTAACAAT.............................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TCAGTATGAAGACACAAGGAAAAGGAT..................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................TAGGTTCTAATATTTAACAATT............................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATAGCTAATAGATATTTACATC..................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................AATAACACGACATGA.................................................................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................TGTAGGTTCTAATATTTAACA................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................ACGACATGAGGGACT.............................................................................................................................................................................................................. 15 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................AGATAGTGTATCAAGCTAACGTCTACGC.................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................GTTTAATGTGTAGGTTCTAAT........................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGGTCTCCACGACGGTAC................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................CGATCCATACATTATTTTTCA............................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................TGTTTAATGTGTAGGTTCTAA......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.CCCTAGTCCACGATATATGTA.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................TGATTTGTCACGCCGATCCATA........................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................CACGACATGAGGGACTTT............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................GATTTGTCACGCCGATCCAT......................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CACACTCAGTATGAAGACACAAGGAAA.......................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................GTACTTTTGTTTAATGTGTAG................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTTCAAATAGCTAATAGATAT............................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................GTCACGCCGATCCGTACATTA................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TAAGGAAAAAGATGAAACAAAGA........................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
TCCCTAGTCCACGATATATGTAAAA................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................CGTACTTTTGTTTAATGTGTAGG............................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................TGAGGGACTTTATAACCCGTA.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
GCCCTAGTCCACGATATATGT..................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CCACACTCAGTATGAAGACACAAGGA............................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AGGAAAAGGATTAAACAAAGATAGTGTATC.................................................. 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGACGGTACGCCTGAGGCTTC..... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CAATTGATTTGTCACGCCGATCCA.......................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................TTGATTTGTCACGCCGATCCATA........................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................AGGTTCTAATATTTAACAAT.............................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................ACACGACATGAGGGACTTTAT.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
TCCCTAGTCCACGATATATGT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGTTTAATGTGTAGGTTCTA.......................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................TTTTGTTTAATGTGTAGGTTC............................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AGGAAAAGGATTAAACAAAG............................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................TGTCACGCCGATCCATACATT.................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................AAGACACAAGGAAAAGGATTA................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................TTGTCACGCCGATCCATACA...................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................ATGTAAAATAACACGACATGAGGGACTT............................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................ATAACACGACATGAGGGAC............................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ACGCCGGTCCGTACATTATTT................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................AACCCGTACTTTTGTTTAA....................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................ATAACACGACATGAGGGACT.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................GTCACGCCGATCCATACATTA................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................CAAGGAAAAGGATTAAACAAA............................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CCACACTCAGTATGAAGACACAAGGAAAAG........................................................................ 30 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GACGGTAGGCCTGATGCT....... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0
GCCATAGTCCACGATAAA........................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................TAGGAAGCGACAAGGAAAAG........................................................................ 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:563451-563700 + dsi_22094 AGGGATCAGGTGCT----ATATACATTT---TATTGTGCTGTACTCCCTGAAATATTGGGCATGAAAACA--AATTACA------CATCCAAGATTATAAATTGTTAAC--TAAACAGTGCGGCTA-----GGTATGTAATAAAAAGTTTATCGAT-TATCTATA-----------AAT-G------TAG--GTGTGAGTCATAC--TTC-----TGTGTTCCTTTTCCTAA--TTTGTTTCTATCACATAGTTC-GATTGCAGATGCGCCAGAGGTGCTGCCATGCG---GACTCCGAAGGAGCA
droSec2 scaffold_2:619065-619314 + AGGGATCAGGTGCT----ATATACATTT---TATTGTGCTGTACTCCCTGAAAGATTGGGCATGAAAACA--AATTACA------CATCCAAGATTATAAATTGTTAAC--TAAACAGTGCGGCTA-----GGTATGTAATAAAAAGTTTATCGAT-TATCTATA-----------AAT-G------TAG--GTGTGAGTCATAC--TTC-----TGTGTTCCTTTTCCTAA--TTTGTTTCTATCACATAGTTC-GATTGCAGATGCGCCAGAGGTGCTGCCATGCG---GACTCCGAAGGAGCA
dm3 chr3L:599094-599348 + GGGGATCAGATGCT----ATATACATTT---TATTGCGCTGTACTCCCTGAAATATTGGGCATGAAAACA--AATTACA------CATCCAAGATTATAAATTGTTAAC--TAAACAGTGCGGCTAGTGCGGCTATGTAATAAAAAGATTATCGAT-TATCTATA-----------AAT-G------TAG--GTGTGAGTCATAC--TTC-----TGTGTTCCTTTTGCTAA--TTTGTTTCTATCACATAGTTC-GATTGCAGATGCGCCAGAGATGCTGCCATGCG---GACTCCGAAGGAGCA
droEre2 scaffold_4784:601316-601569 + GGGGATCAGGTGCT----ATATACATTT---TATTGTGCTGTACTCCCTGAAATATTGGGCATGAAAACA--AATTACA------CATCCAAGATAATAAATTGTTAAC--TAAACAGTGCGGCTA-----GGTATGTAATAAAAAGATTATCGAT-TATCTATA-----------CAT-G------TAG--CTGTGAGTCATAC--TTCTGTTCTGTTTTCCTT-TGCTAA--TTTGTTTCTATCACATAGTTC-GATTGCAGATGCGCCAGAGTTGCTGCCATGCG---GACTCCGAAGGAGCA
droYak3 3L:581671-581926 + GGGGATCAGGTGCT----ATATACATTTTATTATTGAGCTGTACTCCCTGAAAGATTGGGCATGGAAACA--AATTACA------CATCCAAGATTATAAATTGTTAAC--TAAACAGTGCGGCTA-----GGTATGTAATAAAACGATTATCGAT-TATCTATA-----------AAT-GTACA--TAG--GTGTGAGTCATAC--TTG-----TGTGTTCCTT-TGCTAA--TTTGTTTCTATCACATAGTTC-GATTGCAGACGCGCCAGAGTTGCTGCCATGCG---GACTCCGAAGGAGCA
droEug1 scf7180000409184:622413-622643 + AAAGATCAGGTGCT----ATATACAT-T---TATTGTGCTGTACTCCCTGAAA--ACGGGTATGAAAACAC-GATTACA------CATCCAAT-------ATTGTTAAC--TAAACAGAGCGGTTA-----GGTATGTAATAAAA--A-------T-TAACTTTA-----------AAT-G------TAG--ATGTGAGTCATAC--TTT-----TGAGTTCCTT-TGCTAA--TTTGTTTCTATCACATAGTTA-GATTGCACATTTGCCAGAGGCGTTGCCATGAG---GACTGCTGGAGAGCA
droBia1 scf7180000300910:669745-669984 + AAAGGTCAGGTGCT----ATATACATTT---TATTGTGCCGTACTCCCTGAAAAAATGGGTATGAAAACA--GGTCACA------CATCCAAGATTATTAATTGTTAAC--TA-ACAGTGCGGCTA-----GGTGTGTAATAAAAGGA-------T-TAACTTTA-----------AAC-G------TAG--GTGTGAGTCATAC--TT------TGTGTTCCTT-TGCTAA--CTTGTTTCTATCACATGGTTT-GATTGCAGATCCGCCAGAGACGCTGCCATGCC---GACTCCCGAGGAGCA
droTak1 scf7180000415846:86867-87052 - AAAGATCAGGTGCT----ATATACATTT---TATTGTGCTGTACTCCCTGAAA-------------------------------------AAGATTATAAATTGTTAAC--TAAACAGTGCGGCTA-----GGTATGTAATAAAACGA-------T-TAACTT------------------------TAA--GTGTGAGTCATAC--TTT-----TGTGTTGCTT-TGCTAACTTTTGTTTCTATCACATAGTTTTGATTGCAGATTTGCCAGAGTTTC---------------------------
droEle1 scf7180000491249:734833-735054 + AAAGATCAGGTGCT----ATATACATTT---TATTGTACTGCAGTCCCTGAAAA-ATGGGTATGAAAACACGAATTACA------CATCCGAAAATACAAATTGTTAAC--TAAACAAGGCGGCTA-----GGTATGTAATAAAAAGA-------C-TAACATTA-----------A-T-TGAAG--TAG--CTGTGAGTCATACGTTTT-----TGTGTTCCTT-TGCTAA--TTTGTTTCTATCACATGGTTC-GATTGCAGATTCGCCAGG--TGC---------------------------
droRho1 scf7180000765857:13438-13679 + AAAGATCAGGTGCT----TTATACATTT---TATTGTGCTGCTGTCCCTGAATAAATGGGTATGAAAACA--GATAACA------CATCCAAGAACATAAATTGTTAAC--TAAACAAGACGGCTA-----GGTATGTAATAAAAAGA-------C-TAACTTTA-----------AAT-G------TAG--GTGTGAGTCATAC--TTT-----TGTGTTCCTT-TGCTAA--TTTGTTTCTATCACATGGTTC-GATTGCAGATTCGCCAGAGGCGCTGCCATGCG---GACTCCGGAGGAGCA
droFic1 scf7180000453052:657548-657787 - AAAGATCAGGTGCT----ATATACAT-T---TATTGTGCTGTACTCCCTGAAAAGATGGGCGTGAAAACACAGATTACA------CATCCAAGATAATAAATTGTTAAC--TAAA-ACTGCGGCTA-----GGTATGTAATAAAAAGA-------C-TAACTTTA-----------AAT-G------TAG--GTGTGAGTCATAC--TT------TGCGTTCCTT-TGCTAA--TTTGTTTCTATCACATGGTTC-GATTGCAGGTTCGCCAGAGGCGCTCCCATCTG---GACTCCG-AGGAGCA
droKik1 scf7180000301710:383307-383507 + AAAGATCAGGTGCTACATATATACATTT---TATTGTGCCGTACTCCCTGAAATA------------------ATTACA------CATCCACGATTAGAGATTGTTAAG--TAAACAGTGCGGCAA-----AG----TAATAAAGAGA-------CGTAACTTTA-----------GAT-TTAACTGTAACTGTGTGAGTCATAC------------------------TAA--TTTGTTTCTATCACATGGTTC-GATTGCAGCTGCGCCG-------------------TGCTCCGGAGGAG--
droAna3 scaffold_13337:2101481-2101691 - AATGGTCAAATGCTAAATATATACAT-T---TATTGTGCTGTAATCCCTGAACAAATGGGCATACAAATACAGA---TA------CATTGAAGATTACAAATTGTTAAA--TAAACAGTGCGCCTT-----------TA--------A-------C-TAAGTTTA-----------AAT-TTAAGTTCAA--GTGTGAGTCC-AC--TT------CGTGTTCCTT-TGCTAA---TAGTTTCTATCACATGGTTT-GATTGCAGCTTTGCCAGAGCAGCTG-------------------------
droBip1 scf7180000396569:2139382-2139581 - A----TCAAATGCTACATATATACAT-T---TATTGTGCTGTAATCCCTGAACATATGGGCATACAAATACAGA-TACACAGAAACATTGAAGATTA-AAATTGTTAAA--TAAACAGTGCGCCTT-----------TA--------A-------C-TAAGTTTA-----------AAT-TTAAG--TTA--GTGTGAGTTC------------------TCCTT-TGCTAA---TTGTTTCTATCACATGGTTT-GATTGCAGCTTCGCCAGC----------------------------AGCT
dp5 XR_group3a:769449-769636 - A------------------------------------------------------------------------------------CATCCAAGACGGTCCGTT-TAAACAATACAGAGTGCGGCTA-----AGT----AATCAAATAATCAAGTAC-TAACTATATGTTTGTTGTAAGTGG------TAA--GTGTGAGTCGCAG--TT-------GTGTTTCTT-CGTTAC-TAATGATTGTATCACATGGTTT-T-CTACAGCTTCGCCAGA--CGCTGCCATCCGCCCGACTGCCAGAGGAGA
droPer2 scaffold_23:802170-802357 - A------------------------------------------------------------------------------------CATCCAAGACGGTCCGTT-TAAACAATACAGAGTGCGGCTA-----AGT----AATCAAATAATCAAGTAC-TAACTATATGTTTGTTGTAAGTGG------TAA--GTGTGAGTCGCAG--TT-------GTGTTTCTT-CGTTAC-TAATGATTGTATCACATGGTTT-T-CTACAGCTTCGCCAGA--CGCTGCCATCCGCCCGACTGCCAGAGGAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGGGATCAGGTGCT----ATATACATTT---TATTGTGCTGTACTCCCTGAAATATTGGGCATGAAAACA--AATTACA------CATCCAAGATTATAAATTGTTAAC--TAAACAGTGCGGCTA-----GGTATGTAATAAAAAGTTTATCGAT-TATCTATA-----------AAT-G------TAG--GTGTGAGTCATAC--TTC-----TGTGTTCCTTTTCCTAA--TTTGTTTCTATCACATAGTTC-GATTGCAGATGCGCCAGAGGTGCTGCCATGCG---GACTCCGAAGGAGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................CATTT---TATTGTGCTGTACTCC...................................................................................................................................................................................................................................................................21110.001061000012000000000
.........................TTT---TATTGTGCTGTACTCCCT.................................................................................................................................................................................................................................................................2119.00961000011000000000
.........................................................................................CAAGATTATAAATTGTTAAC--T..................................................................................................................................................................................................2117.00730000013000000000
...................................GTGCTGTACTCCCTGAAATAT..........................................................................................................................................................................................................................................................2116.00610000121000001000
........................ATTT---TATTGTGCTGTACTCCC..................................................................................................................................................................................................................................................................2116.00620010012000000000
......................................CTGTACTCCCTGAAATATTGG.......................................................................................................................................................................................................................................................2115.00501010012000000000
.................................................................................................TAAATTGTTAAC--TAAACAGTGCGGC......................................................................................................................................................................................2514.00400000020101000000
....................ATACATTT---TATTGTGCTGTACTCCCT.................................................................................................................................................................................................................................................................2613.00300300000000000000
......................................................................................................TGTTAAC--TAAACAGTGCGGCT.....................................................................................................................................................................................2113.00311000000000010000
...............................TATTGTGCTGTACTCCCTGAA..............................................................................................................................................................................................................................................................2113.00300000030000000000
.........................TTT---TATTGTGCTGTACTCCC..................................................................................................................................................................................................................................................................2013.00310000001001000000
.........................................................................................................TAAC--TAAACAGTGCGGCTA-----GG.............................................................................................................................................................................2112.00200000011000000000
.....................................................................................................TTGTTAAC--TAAACAGTGCGGC......................................................................................................................................................................................2112.00210000010000000000
.......................CATTT---TATTGTGCTGTACTC....................................................................................................................................................................................................................................................................2012.00200000002000000000
.................................TTGTGCTGTACTCCCTGAAATATTGGGCAT...................................................................................................................................................................................................................................................3011.00100000000000001000
................................ATTGTGCTGTACTCCCTGA...............................................................................................................................................................................................................................................................1911.00100000001000000000
....................................TGCTGTACTCCCTGAAATATT.........................................................................................................................................................................................................................................................2111.00100000010000000000
........................ATTT---TATTGTGCTGTACTCC...................................................................................................................................................................................................................................................................2011.00100000001000000000
...........................................................GCATGAAAACA--AATTACA------CA...........................................................................................................................................................................................................................2011.00100001000000000000
...........................T---TATTGTGCTGTACTCCCTGA...............................................................................................................................................................................................................................................................2111.00100000001000000000
...............................TATTGTGCTGTACTCCCTGAAATA...........................................................................................................................................................................................................................................................2411.00100000000100000000
..................................................................................................................................................GTTTATCGAT-TATCTATA-----------AAA-..............................................................................................................................2111.00100000010000000000
...............................................................................................................................................................................................................................................................................AGAGGTGCTGCCATGCG---GACT...........2111.00101000000000000000
............................................................................................................................................................................................................................................................TTC-GATTGCAGATGCGCCAGA................................2111.00100000001000000000
...........................................................................................................................CTA-----GGTATGTAATAAAAAGTT.............................................................................................................................................................2111.00100000001000000000
....................................................................................................ATTGTTAAC--TAAACAGTG..........................................................................................................................................................................................1811.00100001000000000000
.....................TACATTT---TATTGTGCTGTACT.....................................................................................................................................................................................................................................................................2111.00110000000000000000
AGGGATCAGGTGCT----ATATA...........................................................................................................................................................................................................................................................................................1911.00100000000001000000
...........................T---TATTGTGCTGTACTCCCTGAAATATT.........................................................................................................................................................................................................................................................2711.00100000010000000000
...................................................................................................AATTGTTAAC--TAAACAGT...........................................................................................................................................................................................1811.00100001000000000000
...................................................................................................................................................................TA-----------AAT-G------TAG--GTGTGAGTCATAA--A..................................................................................................2311.00100000000100000000
.....................................................................................................TTGTTAAC--TAAACAGTGCGGCT.....................................................................................................................................................................................2211.00100000000000010000
................................................TGAAATATTGGGCATGAAAACA--AATT......................................................................................................................................................................................................................................2611.00100000000000010000
..................................TGTGCTGTACTCCCTGAAATA...........................................................................................................................................................................................................................................................2111.00100000010000000000
...............................................................................................................TAAACAGTGCGGCTA-----GGT............................................................................................................................................................................1811.00100000100000000000
...................................................................................................................................................................................................................................................................TGCAGATGCGCCAGAGGTGCT..........................2111.00100000000001000000
...........................................................................................................................CTA-----GGTATGTAATAAAAAGT..............................................................................................................................................................2011.00100000010000000000
.....................................................TATTGGGCATGAAAACA--AATTACA------CA...........................................................................................................................................................................................................................2611.00100000001000000000
...........................T---TATTGTGCTGTACTCCCTGAA..............................................................................................................................................................................................................................................................2211.00100000001000000000
.........................................................................................CAAGATTATAAATTGTTAA......................................................................................................................................................................................................1911.00100001000000000000
..........................................................................TTACA------CATCCAAGATTATAAAT............................................................................................................................................................................................................2211.00100000010000000000
........................................................TGGGCATGAAAACA--AATTAC....................................................................................................................................................................................................................................2011.00100000100000000000
......................................................................................................................................ATGTAATAAAAAGTTTATCGA.......................................................................................................................................................2111.00100000000001000000
........................................................................................................................................................................................................................................................ATAGTTC-GATTGCAGATGCGC....................................2111.00110000000000000000
.........................................................................................................................................................................................................................................................TAGTTC-GATTGCAGATGCGCCAGAGG..............................2611.00100000010000000000
.......................CATTT---TATTGTGCTGTACTCCC..................................................................................................................................................................................................................................................................2211.00100000010000000000
.........................TTT---TATTGTGCTGTACTCCCC.................................................................................................................................................................................................................................................................2111.00101000000000000000
............................................................................................................................TA-----GGTATGTAATAAAAAGTTT............................................................................................................................................................2111.00100000000000001000
.........................TTT---TATTGTGCTGTACTCCCTGA...............................................................................................................................................................................................................................................................2311.00100000010000000000
.................................TTGTGCTGTACTCCC..................................................................................................................................................................................................................................................................1511.00100000010000000000
..........................................................................................................AAC--TAAACAGTGCGGCTA-----GGT............................................................................................................................................................................2111.00100000000001000000
.......................................................................................................................................TGTAATAAAAAGTTTATCGAT-TATCTA...............................................................................................................................................2711.00100000001000000000
...........................................................................................................................................................................................................................................................................................ATGCG---GACTCCGAAGGAGC.1911.00100000000001000000
....................................TGCTGTACTCCCTGAAATATTGGGCA....................................................................................................................................................................................................................................................2611.00100000010000000000
...............................TATTGTGCTGTACTCCCT.................................................................................................................................................................................................................................................................1811.00101000000000000000
.........................................................................................................................................TAATAAAAAGTTTATCGAT-TA...................................................................................................................................................2111.00100000001000000000
...........................T---TATTGTGCTGTACTCCC..................................................................................................................................................................................................................................................................1811.00101000000000000000
.................................TTGTGCTGTACTCCCTGA...............................................................................................................................................................................................................................................................1811.00100000001000000000
......................................................................................................................TGCGGCTA-----GGTATGTAATAT...................................................................................................................................................................2011.00100000000000001000
..........................................................................................................AAC--TAAACAGTGCGGCTA-----GG.............................................................................................................................................................................2011.00100000010000000000
.............................................................................................................................................................................................................................................................TC-GATTGCAGATGCGCCAGAGG..............................2211.00100000001000000000
.....................................................................................................................GTGCGGCTA-----GGTATGTAATA....................................................................................................................................................................2011.00100000000000010000
...................................GTGCTGTACTCCCTGAAATATT.........................................................................................................................................................................................................................................................2211.00100000001000000000
...................................................................................................................................................TTTATCGAT-TATCTATA-----------AAA-A------.......................................................................................................................2120.50100000001000000000
droSec2
AGGGATCAGGTGCT----ATATACATTT---TATTGTGCTGTACTCCCTGAAAGATTGGGCATGAAAACA--AATTACA------CATCCAAGATTATAAATTGTTAAC--TAAACAGTGCGGCTA-----GGTATGTAATAAAAAGTTTATCGAT-TATCTATA-----------AAT-G------TAG--GTGTGAGTCATAC--TTC-----TGTGTTCCTTTTCCTAA--TTTGTTTCTATCACATAGTTC-GATTGCAGATGCGCCAGAGGTGCTGCCATGCG---GACTCCGAAGGAGCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................CATTT---TATTGTGCTGTACTCC...................................................................................................................................................................................................................................................................2114.0042002
.........................................................................................................TAAC--TAAACAGTGCGGCTA-----GG.............................................................................................................................................................................2113.0030102
..........................................................................................................AAC--TAAACAGTGCGGCTA-----GGT............................................................................................................................................................................2113.0031200
...............................................CTGAAAGATTGGGCATGAAA...............................................................................................................................................................................................................................................2012.0021100
.....................................................................................................TTGTTAAC--TAAACAGTGCGGC......................................................................................................................................................................................2112.0020101
.........................................................................................................................................................................................................................................................TAGTTC-GATTGCAGATGCGC....................................2011.0011000
.........................................................................................................TAAC--TAAACAGTGCGGCTA-----GGT............................................................................................................................................................................2211.0010100
........................................................................................................TTAAC--TAAACAGTGCGGCTA-----G..............................................................................................................................................................................2111.0011000
..........................TT---TATTGTGCTGTACTCCCTG................................................................................................................................................................................................................................................................2111.0011000
..................................TGTGCTGTACTCCCTGAAAGA...........................................................................................................................................................................................................................................................2111.0010100
....................................TGCTGTACTCCCTGAAAGATT.........................................................................................................................................................................................................................................................2111.0010001
.....................................................................................CATCCAAGATTATAAATTGTT........................................................................................................................................................................................................2111.0010001
....................................................................CA--AATTACA------CATCCAAGATTA.................................................................................................................................................................................................................2111.0011000
.................................TTGTGCTGTACTCCCTGAAAG............................................................................................................................................................................................................................................................2111.0010001
...............................................................................................................TAAACAGTGCGGCTA-----GGTATG.........................................................................................................................................................................2111.0010100
....................................................................................................ATTGTTAAC--TAAACAGTGCGG.......................................................................................................................................................................................2111.0011000
....................................................................CA--AATTACA------CATCCAAGAT...................................................................................................................................................................................................................1911.0010001
......................................CTGTACTCCCTGAAAGATTGT.......................................................................................................................................................................................................................................................2111.0011000
......................................CTGTACTCCCTGAAAGATTGG.......................................................................................................................................................................................................................................................2111.0011000
..............................................CCTGAAAGATTGGGCATGAAA...............................................................................................................................................................................................................................................2111.0011000
...............................................CTGAAAGATTGGGCATGAAT...............................................................................................................................................................................................................................................2011.0010001
dm3
GGGGATCAGATGCT----ATATACATTT---TATTGCGCTGTACTCCCTGAAATATTGGGCATGAAAACA--AATTACA------CATCCAAGATTATAAATTGTTAAC--TAAACAGTGCGGCTAGTGCGGCTATGTAATAAAAAGATTATCGAT-TATCTATA-----------AAT-G------TAG--GTGTGAGTCATAC--TTC-----TGTGTTCCTTTTGCTAA--TTTGTTTCTATCACATAGTTC-GATTGCAGATGCGCCAGAGATGCTGCCATGCG---GACTCCGAAGGAGCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.........................................................................................CAAGATTATAAATTGTTAAC--TAAACAGT...........................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................AACAGTGCGGCTAGTGCGGC.............................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000
....................................................................................................................................CTATGTAATAAAAAGATTATC.........................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CATTT---TATTGCGCTGTACTCCCTGA...............................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................TTGCGCTGTACTCCCTGAAATATTGGG......................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.................................................GAAATATTGGGCATGAAAACA--..........................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................TTT---TATTGCGCTGTACTCCCTGA...............................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTGTTAAC--TAAACAGTGCGGA......................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................................................TGCGGCTAGTGCGGCTATGTAATAAAAA................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000
..................................................................................................AAATTGTTAAC--TAAACAGTGCGGC......................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TACATTT---TATTGCGCTGTA.......................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TAAC--TAAACAGTGCGGCTAGTGCGG..............................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................TCCAAGATTATAAATTGTTAAC--T..................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................ATTGTTAAC--TAAACAGTGCGGC......................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................CA------CATCCAAGATTATAAATTG..........................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
............................................................................ACA------CATCCAAGATTATAAATTGTTAAC--...................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................C--TAAACAGTGCGGCTAGTGCGGCTATG.........................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................TTCTATCACATAGTTC-GATTGCAGA.........................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................A-----------AAT-G------TAG--GTGTGAGTCATAC--T..................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001000000000000000000000000
..........................TT---TATTGCGCTGTACTCCCTGAAA.............................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................TGTAATAAAAAGATTATCGAT-TATC.................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
........................................................................................................TTAAC--TAAACAGTGCGGCTA....................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000
.....................TACATTT---TATTGCGCTGTACTCCCTG................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................GCATGAAAACA--AATTACA------CA...........................................................................................................................................................................................................................2012.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................GTGCGGCTAGTGCGGCTATG.........................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.................................................................................................TAAATTGTTAAC--TAAACAGTGCGGCTAG...................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGCGCTGTACTCCCTGAAAT............................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CGCTGTACTCCCTGAAATATTGGGCA....................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................ACAGTGCGGCTAGTGCGGCTATG.........................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................CTGTACTCCCTGAAATATTGGG......................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTT---TATTGCGCTGTACTCC...................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................AAT-G------TAG--GTGTGAGTCATAC--T..................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000
....................................................................................................................................................................A-----------AAT-G------TAG--GTGTGAGTCATAC--...................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................AATATTGGGCATGAAAACA--A.........................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.....................................................................................CATCCAAGATTATAAATTGTT........................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100
..........................................................................TTACA------CATCCAAGATTATAAAT............................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TC-GATTGCAGATGCGCCAGAGATGC...........................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................TTGGGCATGAAAACA--AATTAC....................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000000
.........................................................................................................TAAC--TAAACAGTGCGGCTAGTG.................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110
.........................................................................................CAAGATTATAAATTGTTAAC--T..................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................TAAC--TAAACAGTGCGGCTAGTGCGGCTA...........................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..............................................................TGAAAACA--AATTACA------CATCCA.......................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CTAGTGCGGCTATGTAATAA...................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................TATTGGGCATGAAAACA--AATTACA------CAT..........................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................AACA--AATTACA------CATCCAAGATT..................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ATACATTT---TATTGCGCTGTACTCCCT.................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TAATAAAAAGATTATCGAT-TA...................................................................................................................................................2112.0020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
......................ACATTT---TATTGCGCTGTACT.....................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TATCTATA-----------AAT-G------TAG--GTGTGA............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTGTTAAC--TAAACAGTGCGGCTAGTGC................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................C--TAAACAGTGCGGCTAGTGCGGC.............................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
....................................................................................................ATTGTTAAC--TAAACAGTGCGGCTAG...................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.............................................................................CA------CATCCAAGATTATAAATTGTTAAC--...................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AATATTGGGCATGAAAACA--AATTACA------.............................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GTGCGGCTATGTAATAAAAAGATTATC.........................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000
.................................................................................................................................................................TATA-----------AAT-G------TAG--GTGTGAGTCTA.......................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000
........................................................................AATTACA------CATCCAAGATTATA...............................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TAGTGCGGCTATGTAATAAAAAG...............................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................TGCTGCCATGCG---GACTCCGAA......2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................AACA--AATTACA------CATCCAAGAT...................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................TATAAATTGTTAAC--TAAACAGTGCGGCT.....................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TTACA------CATCCAAGATTATAA..............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GATGCT----ATATACATTT---TATTGCGC...........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................TTGGGCATGAAAACA--AATTACA------CATCCAA......................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GTTC-GATTGCAGATGCGCCAG.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AAATATTGGGCATGAAAACA--AA........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................GTGAGTCATAC--TTC-----TGTGTTC....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TGCCATGCG---GACTCCGAAG.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CAGAGATGCTGCCATGCG---GACTCCGAA......2711.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................ACA--AATTACA------CATCCAAGAT...................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................GATGCGCCAGAGATGCTGCCATGCG---GAC............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ATTGCGCTGTACTCCCTGAAT.............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
............................................................................................................C--TAAACAGTGCGGCTAGTGCGGCTAT..........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................GATTGCAGATGCGCCAGAGAT.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGCGCTGTACTCCCTGAAATATTGGGCAT...................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TGGGCATGAAAACA--AATTACA------CATCCAA......................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CGCTGTACTCCCTGAAATATTGGGCAT...................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
............................................................CATGAAAACA--AATTACA------CATC.........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................CTATGTAATAAAAAGATTATCGAT-TA...................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CCAAGATTATAAATTGTTAAC--TAAAC..............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGAAAACA--AATTACA------CATCCAAGATTAA................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TGTTAAC--TAAACAGTGCGGC......................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GGCTATGTAATAAAAAGATTATCGAT-.....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TGCGGCTAGTGCGGCTATGTA.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droEre2
GGGGATCAGGTGCT----ATATACATTT---TATTGTGCTGTACTCCCTGAAATATTGGGCATGAAAACA--AATTACA------CATCCAAGATAATAAATTGTTAAC--TAAACAGTGCGGCTA-----GGTATGTAATAAAAAGATTATCGAT-TATCTATA-----------CAT-G------TAG--CTGTGAGTCATAC--TTCTGTTCTGTTTTCCTT-TGCTAA--TTTGTTTCTATCACATAGTTC-GATTGCAGATGCGCCAGAGTTGCTGCCATGCG---GACTCCGAAGGAGCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................AACA--AATTACA------CATCCAAGAT...................................................................................................................................................................................................................2112.0021000010
...........................................................................................................................................................................................................................................................GTTC-GATTGCAGATGCGCCAG.................................2111.0010000100
.....................................................................................................................................................................................................................................................................CAGATGCGCCAGAGTTGCTTTT.......................2211.0010000100
...................................................................................................AATTGTTAAC--TAAACAGTGCGGCTA-----G..............................................................................................................................................................................2611.0010001000
......................................................................................................................................ATGTAATAAAAAGATTATC.........................................................................................................................................................1911.0011000000
.......................................................................................................GTTAAC--TAAACAGTGCGGCTA-----GGTAT..........................................................................................................................................................................2611.0010000100
........................................GTACTCCCTGAAATATTGGGCATGAAAAC.............................................................................................................................................................................................................................................2911.0011000000
.......................CATTT---TATTGTGCTGTACTCC...................................................................................................................................................................................................................................................................2111.0010000010
................................................................................................................AAACAGTGCGGCTA-----GGTATGT........................................................................................................................................................................2111.0010000100
........................................GTACTCCCTGAAATATTGGGC.....................................................................................................................................................................................................................................................2111.0010100000
................................................................................................................AAACAGTGCGGCTA-----GGTATGTA.......................................................................................................................................................................2211.0011000000
..............................................................................................TAATAAATTGTTAAC--TAAT...............................................................................................................................................................................................1940.2510000010
...............................................CTGAAATATTGGGCATGTTT...............................................................................................................................................................................................................................................20160.0611000000
droYak3
GGGGATCAGGTGCT----ATATACATTTTATTATTGAGCTGTACTCCCTGAAAGATTGGGCATGGAAACA--AATTACA------CATCCAAGATTATAAATTGTTAAC--TAAACAGTGCGGCTA-----GGTATGTAATAAAACGATTATCGAT-TATCTATA-----------AAT-GTACA--TAG--GTGTGAGTCATAC--TTG-----TGTGTTCCTT-TGCTAA--TTTGTTTCTATCACATAGTTC-GATTGCAGACGCGCCAGAGTTGCTGCCATGCG---GACTCCGAAGGAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................ATTTTATTATTGAGCTGTACT.....................................................................................................................................................................................................................................................................2111.00100000010000
.................................TTGAGCTGTACTCCCTGAAAGA...........................................................................................................................................................................................................................................................2211.00100000010000
.............................................................................................................................................................TATCTATA-----------AAT-GTACA--TAG--GTGTGAGT..........................................................................................................2711.00100000010000
..................................................................................................................ACAGTGCGGCTA-----GGTATGT........................................................................................................................................................................1911.00101000000000
.........................................................................................CAAGATTATAAATTGTTAAC--T..................................................................................................................................................................................................2111.00110000000000
........................................................................................................TTAAC--TAAACAGTGCGGCTA-----G..............................................................................................................................................................................2111.00101000000000
.....................................................................................................TTGTTAAC--TAAACAGTGCGGC......................................................................................................................................................................................2111.00101000000000
...................TATACATTTTATTATTGAGCTGTA.......................................................................................................................................................................................................................................................................2411.00100000010000
...............................TATTGAGCTGTACTCCCTGAA..............................................................................................................................................................................................................................................................2111.00100000010000
................................................................................................................AAACAGTGCGGCTA-----GGTATGT........................................................................................................................................................................2111.00101000000000
.................................TTGAGCTGTACTCCCTGAAAG............................................................................................................................................................................................................................................................2111.00101000000000
............................................................................ACA------CATCCAAGATTATAAATTGTT........................................................................................................................................................................................................2411.00101000000000
droEug1
AAAGATCAGGTGCT----ATATACAT-T---TATTGTGCTGTACTCCCTGAAA--ACGGGTATGAAAACAC-GATTACA------CATCCAAT-------ATTGTTAAC--TAAACAGAGCGGTTA-----GGTATGTAATAAAA--A-------T-TAACTTTA-----------AAT-G------TAG--ATGTGAGTCATAC--TTT-----TGAGTTCCTT-TGCTAA--TTTGTTTCTATCACATAGTTA-GATTGCACATTTGCCAGAGGCGTTGCCATGAG---GACTGCTGGAGAGCASizeHit CountTotal NormTotal
No Reads
droBia1
AAAGGTCAGGTGCT----ATATACATTT---TATTGTGCCGTACTCCCTGAAAAAATGGGTATGAAAACA--GGTCACA------CATCCAAGATTATTAATTGTTAAC--TA-ACAGTGCGGCTA-----GGTGTGTAATAAAAGGA-------T-TAACTTTA-----------AAC-G------TAG--GTGTGAGTCATAC--TT------TGTGTTCCTT-TGCTAA--CTTGTTTCTATCACATGGTTT-GATTGCAGATCCGCCAGAGACGCTGCCATGCC---GACTCCCGAGGAGCASizeHit CountTotal NormTotal
No Reads
droTak1
AAAGATCAGGTGCT----ATATACATTT---TATTGTGCTGTACTCCCTGAAA-------------------------------------AAGATTATAAATTGTTAAC--TAAACAGTGCGGCTA-----GGTATGTAATAAAACGA-------T-TAACTT------------------------TAA--GTGTGAGTCATAC--TTT-----TGTGTTGCTT-TGCTAACTTTTGTTTCTATCACATAGTTTTGATTGCAGATTTGCCAGAGTTTC---------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAAGATCAGGTGCT----ATATACATTT---TATTGTACTGCAGTCCCTGAAAA-ATGGGTATGAAAACACGAATTACA------CATCCGAAAATACAAATTGTTAAC--TAAACAAGGCGGCTA-----GGTATGTAATAAAAAGA-------C-TAACATTA-----------A-T-TGAAG--TAG--CTGTGAGTCATACGTTTT-----TGTGTTCCTT-TGCTAA--TTTGTTTCTATCACATGGTTC-GATTGCAGATTCGCCAGG--TGC---------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAAGATCAGGTGCT----TTATACATTT---TATTGTGCTGCTGTCCCTGAATAAATGGGTATGAAAACA--GATAACA------CATCCAAGAACATAAATTGTTAAC--TAAACAAGACGGCTA-----GGTATGTAATAAAAAGA-------C-TAACTTTA-----------AAT-G------TAG--GTGTGAGTCATAC--TTT-----TGTGTTCCTT-TGCTAA--TTTGTTTCTATCACATGGTTC-GATTGCAGATTCGCCAGAGGCGCTGCCATGCG---GACTCCGGAGGAGCASizeHit CountTotal NormTotal
No Reads
droFic1
AAAGATCAGGTGCT----ATATACAT-T---TATTGTGCTGTACTCCCTGAAAAGATGGGCGTGAAAACACAGATTACA------CATCCAAGATAATAAATTGTTAAC--TAAA-ACTGCGGCTA-----GGTATGTAATAAAAAGA-------C-TAACTTTA-----------AAT-G------TAG--GTGTGAGTCATAC--TT------TGCGTTCCTT-TGCTAA--TTTGTTTCTATCACATGGTTC-GATTGCAGGTTCGCCAGAGGCGCTCCCATCTG---GACTCCG-AGGAGCASizeHit CountTotal NormTotal
No Reads
droKik1
AAAGATCAGGTGCTACATATATACATTT---TATTGTGCCGTACTCCCTGAAATA------------------ATTACA------CATCCACGATTAGAGATTGTTAAG--TAAACAGTGCGGCAA-----AG----TAATAAAGAGA-------CGTAACTTTA-----------GAT-TTAACTGTAACTGTGTGAGTCATAC------------------------TAA--TTTGTTTCTATCACATGGTTC-GATTGCAGCTGCGCCG-------------------TGCTCCGGAGGAG--SizeHit CountTotal NormTotal
No Reads
droAna3
AATGGTCAAATGCTAAATATATACAT-T---TATTGTGCTGTAATCCCTGAACAAATGGGCATACAAATACAGA---TA------CATTGAAGATTACAAATTGTTAAA--TAAACAGTGCGCCTT-----------TA--------A-------C-TAAGTTTA-----------AAT-TTAAGTTCAA--GTGTGAGTCC-AC--TT------CGTGTTCCTT-TGCTAA---TAGTTTCTATCACATGGTTT-GATTGCAGCTTTGCCAGAGCAGCTG-------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
A----TCAAATGCTACATATATACAT-T---TATTGTGCTGTAATCCCTGAACATATGGGCATACAAATACAGA-TACACAGAAACATTGAAGATTA-AAATTGTTAAA--TAAACAGTGCGCCTT-----------TA--------A-------C-TAAGTTTA-----------AAT-TTAAG--TTA--GTGTGAGTTC------------------TCCTT-TGCTAA---TTGTTTCTATCACATGGTTT-GATTGCAGCTTCGCCAGC----------------------------AGCTSizeHit CountTotal NormTotal
No Reads
dp5
A------------------------------------------------------------------------------------CATCCAAGACGGTCCGTT-TAAACAATACAGAGTGCGGCTA-----AGT----AATCAAATAATCAAGTAC-TAACTATATGTTTGTTGTAAGTGG------TAA--GTGTGAGTCGCAG--TT-------GTGTTTCTT-CGTTAC-TAATGATTGTATCACATGGTTT-T-CTACAGCTTCGCCAGA--CGCTGCCATCCGCCCGACTGCCAGAGGAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................TAA--GTGTGAGTCGCAG--TT-------GTG.......................................................................................2111.0010100000000
...........................................................................................................................................................................TTGTAAGTGG------TAA--GTGTGAGT..........................................................................................................2111.0010100000000
droPer2
A------------------------------------------------------------------------------------CATCCAAGACGGTCCGTT-TAAACAATACAGAGTGCGGCTA-----AGT----AATCAAATAATCAAGTAC-TAACTATATGTTTGTTGTAAGTGG------TAA--GTGTGAGTCGCAG--TT-------GTGTTTCTT-CGTTAC-TAATGATTGTATCACATGGTTT-T-CTACAGCTTCGCCAGA--CGCTGCCATCCGCCCGACTGCCAGAGGAGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/19/2015 at 02:54 AM