ID:

dsi_22061

 Coordinate:

2l:7884856-7885134 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.9 -8.9 -8.8 -8.7

Flybase annnotation

CDS [2l_7885135_7885546_+]; exon [2l_7885135_7885546_+]; CDS [2l_7884661_7884855_+]; exon [2l_7884661_7884855_+]; intron [2l_7884856_7885134_+]; Antisense to intron [2l_7868185_7886978_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAGTACAATGTGTTTGTGCGCGCCGAAAGAAAAGCGGATGTGTTTCTGGGTAAGTTTTAGTAACAAAATAACAAACAACCTGGCGGTATTGATTGCCACACAGAACTGAGTCCCCGTTAGCTAATTAAATGCTCTGGGACTGGGTTTCGACTGATAAGGGCCCGTGATCTGTTTCGTTTGCCCCAATGAATACGAATCTCGACTGATAACCGCGCTTCAACCTTGGATGGAATCGTCAGCGTTGACGCCATCATCGATACATTTCCATAGAGCAAGAAAAACACGTGTGCGTAATTGATTTTGAATTTATTTTCTATTTCCCTCACAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGGACAAACAAAG
**************************************************************************************************************************************************..((................(((.(((((((((......)))))).))).)))............))********************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
..................................................................................................................................................TTCGACTGATAAGGGCCCGTGATC................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................AGCTACTACAAAACCGGACA....... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AATCTCGACTGATAACCG...................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATCTCGACTGATAACCGCGCT.................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................GAAAAGCGGATGTGTTTCT........................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................AAACGCATCGACAGCTACTACAAAAC............. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................GCGGTATTGATTGCCACACAG................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................TTCGACTGATAAGGGCCCG...................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................CCTCACAGGCGACGTC.......................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0
...................................................................AATAGCAGACAACCTGGCGG.................................................................................................................................................................................................................................................................................................... 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAACCTTGAATGGACTCG............................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TGCGAAATTGATGTTGAA......................................................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................TTTGGACTGATAACCGC..................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..................................................................................GGCGGGCTTGATTGCCAAAC..................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................GACTGAGGACCGCGCT.................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CTTCATGTTACACAAACACGCGCGGCTTTCTTTTCGCCTACACAAAGACCCATTCAAAATCATTGTTTTATTGTTTGTTGGACCGCCATAACTAACGGTGTGTCTTGACTCAGGGGCAATCGATTAATTTACGAGACCCTGACCCAAAGCTGACTATTCCCGGGCACTAGACAAAGCAAACGGGGTTACTTATGCTTAGAGCTGACTATTGGCGCGAAGTTGGAACCTACCTTAGCAGTCGCAACTGCGGTAGTAGCTATGTAAAGGTATCTCGTTCTTTTTGTGCACACGCATTAACTAAAACTTAAATAAAAGATAAAGGGAGTGTCCGCTGTAGTAGTTTGCGTAGCTGTCGATGATGTTTTGGCCTGTTTGTTTC
**********************************************************************************************************************************************************************..((................(((.(((((((((......)))))).))).)))............))************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.................................................................................................................................................................................................................................................................................................................................................................CGATGATGTTTTGGCCTGTTT..... 21 0 1 4.00 4 3 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GGAGTGTCCGCTGTAGTAGTTT.................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................CCCGGGCACTAGACAAAGCAAACG..................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0
..................................................................TTTATTGTTTTTTGGACCAGCAT.................................................................................................................................................................................................................................................................................................. 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................AGTAGTTTGCGTAGCTGTCGATGAT................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................TGCGTAGCTGTCGATGATGTTTTGGC........... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................................................GGGAGTGTCCGCTGTAGTAG....................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GCGGTAGTAGCTATGTAAAGGTATCT........................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...........................................................................................CTAACGGTGTGTCTTGACTCA........................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................GCGTAGCTGTCGATGATGT................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................TGTTTTGGCCTGTTTGTTTC 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................ATTATGTTTCGACCTGTTTGTTT. 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TTATGCTTAGAGCTGGCTGTT......................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AGAGCAGACGATTGGCGC.................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................TGGCGCGAAGTTGTA........................................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................ATGGGCGCGAAGTTGG............................................................................................................................................................ 16 1 4 0.25 1 0 0 0 0 1 0 0 0 0
.............................................................................................................TCAGGGGCTGTCGATCAAT........................................................................................................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................................................................................................................................ACGATGATGGTTCGGCCTG........ 19 3 7 0.14 1 0 0 0 0 0 0 0 1 0
...............ACACGCGCGGCTATCTTTAG........................................................................................................................................................................................................................................................................................................................................................ 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................GTAGAGCTGACTATT......................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................ATGTGCGCGAAGTTGGA........................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................CTGGGGCACTAGACAAACC.......................................................................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0 0 0 0 0
...........................................................................................................ACTCAGGGGCAATGG................................................................................................................................................................................................................................................................. 15 1 16 0.06 1 0 0 0 0 0 0 0 1 0
.................................................................................................................................................CGAGCTGACTATTCCAGG........................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:7884806-7885184 + dsi_22061 GAA-----GTACAATGTGTTTGTGCGCGCCGAAAGAAAAGCGGATGTGTTTCTGGGTAAGTTTT---A------------------------------------------------------------GTAACAAAATAAC--AAA---CAACCTGGCGGTATTGATTGCCACACAGAACTGAGTCCCCG-------------TTAGCTAATT------AAATGCTCT-GGGACTGGG----------TTTC-------------------------------------------------------------------GACTGATAA-----------GGGC---------------------------------CCGTGAT-CTGTTTCGTTTGCCCCA--ATGAA---TAC------------------------GAATCTCG-ACTGATAACCGCGCT----TCAACCTTGGATGG-------AA-----TCG--------TCAGCGTTG-ACGCCATCATC------------------GATACATTTCCATAGAGCA-----AGAA-------------AAACACGTGTGC--G---------------------------------TAATTGAT---TTTGAATTTATTTT--C--------------TATTTCCCTCACAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGG-----------------ACAAACAAAG------------------
droSec2 scaffold_3:3654420-3654798 + GAA-----GTACAATGTCTTTGTGCGCGCCGAAAGAAAGGCGGATGTGTTTCTGGGTAAGTTAT---A------------------------------------------------------------GTAACAAAATGAC--AAA---CAACCTGGCGGTATTGATTGCCACACAGAACTGAGTCCCCG-------------TTAGCTAATT------AAATGCTCT-GAGACTGGG----------TTTC-------------------------------------------------------------------GACAGATAA-----------GGGC---------------------------------CCGTGAT-CTGTTTCGTTTGCCCCA--ATGAA---TAC------------------------GAATCTCG-ACTGATAACCGCGCT----TGAACCTTGGATGG-------AA-----TCG--------TCAGCGTTG-ACGCCATCATC------------------GATACATTTCCATAGAGCA-----AGAA-------------AAACACGTGTGC--G---------------------------------CAATTGAA---TTTGAATTTATTTT--C--------------TATTTCCCTCACAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGG-----------------ACAAACAAAG------------------
dm3 chr2L:8157207-8157586 + CAA-----GTACAATGTGTTTGTTCGCGCCGAAAGAAAAGCGGATGTGTTTCTGGGTGAGTTAT---A------------------------------------------------------------GTAACAAAATAAC--AAA---CAACCTGGCGGTATTGATTGCCACACAGTACTGAGTCCCCG-------------TTAGCTAATT------AAATGCTCT-GAGACTGGG----------TTTCG------------------------------------------------------------------GACTGATAA-----------GGGC---------------------------------CCGTGAT-CTGTTTCGTTTGCCCCA--ATGAA---TAC------------------------GAATCTCT-ACTGATAACCGCGCT----TCAACCTTGGATGG-------AA-----TCG--------TCAGCGTTG-ACGCCATCATC------------------GATACATTTCCATAGGGCA-----AGAA-------------AAACACGTGTGC--G---------------------------------CAATTGAT---TTAGAAATTGTTTT--C--------------TATTTCCCTCACAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGG-----------------ACAAACAAAG------------------
droEre2 scaffold_4929:17063229-17063592 + GAA-----ATACAATGTGTTTGTGCGCGCCGAAAGAAAAGCGGATGTGTTCCTGGGTGAGTTAA---A------------------------------------------------------------GTGACAAAATAAC--AAA---CAACCTGGCGGTATTGATTGCCACACAGAACTGAGCCCCCG-------------TTAGCTAAAT------AAATGCTGT-GAGTCTGCG----------TTTC-------------------------------------------------------------------GACTGATAA-----------G-GC---------------------------------CCGGGAT-CTGCTTTGTTTGCCCCA--ATGAA---TAC------------------------GAATCTCG-ACTGATAACCGCACT----TCAACCTTGGATGG-------AA-----TCG--------TCAGCGTTG-ACGCCATCATC------------------GAT--------------CT-----AAAA-------------AAACACGTGTGC--G---------------------------------GAGCTAAT---TTACTAATTGTTTT--C--------------TATTTTTCCCAAAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGG-----------------GCAAACCAAG------------------
droYak3 2L:10788770-10789148 + GAA-----GTACAATGTGTTTGTGCGCGCCGAAAGAAAAGCGGATGTGTTTCTGGGTGAGTTAT---A------------------------------------------------------------GTGACAAAATAAC--AAA---CAACCTGGCGGTAATGATTGCCACACAGAACTGAGCCCCCG-------------TTAGCTAATT------AAATGCTCT-GAGACTGGG----------TTTC-------------------------------------------------------------------GACTGATAA-----------GGGC---------------------------------CCGAGAT-CTGTTTTGTTTGCCCCA--ATGAA---TAC------------------------GAATCTCG-ACTGATAACCGCGCT----TCAACCTTCGATGG-------AA-----TCG--------TCAGCGTTG-ACGCCATCATC------------------ATTCCATTTACATGTAGCA-----AAAA-------------ATACACGTGTGC--G---------------------------------GAGCTGAT---TTTGTAATGGCTTT--A--------------TATTTTCCCCACAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGG-----------------GCAAACAAAG------------------
droEug1 scf7180000409461:152076-152454 + GAA-----GTACAATGTTTTCGTACGCGCCGAAAGAAAAGCGGATGTCTTCTTGGGTAAGTTAT---G------------------------------------------------------------AAAACTAAGTAAC--AAA---CAACCTGGCGGTATCGATCGTCGCAGAGAACTGAGCC-CCG-------------TTAGCTAATT------AATTGCTCT-GGGACTCTG----------GGTT-------------------------------------------------------------------GAGTGATAA-----------GAGC---------------------------------CCGGGAT-CTGTTATGTTTGTCCGA--ATGAA---TAC------------------------GAATCTCG-GCTGATAACCGTGCT----TCAACCTTGGATGA-------AA-----ACG--------TCAGCGTTG-ACGCCATCATC------------------TCTACATTTTCATATAATG-----ACAA-------------AAACACGTGTGC--G---------------------------------CAACTGAT---TTTCTAATGTTTT-TCC--------------TCATTTTCCCACAGGCGACATCATCAAGCGCATCGATAGCTACTACAAAAGCGG-----------------GCAAACAAAG------------------
droBia1 scf7180000302408:3200535-3200911 + GAA-----GTACAATGTGTTCGTACGCGCCGAAAGAAAAGCGGATGTGTTTTTGGGTGAGTTATTCCA------------------------------------------------------------TAAA-CAAGTAAC--AAA---CAACCCGGCGGTATCGATTGCCACACAGAACTGAGCCCCCG-------------TTAGCTAATT------GATTGCTCT-GGTGCTCTG----------TTTC-------------------------------------------------------------------GAGTGATAA-----------CAGC---------------------------------CCGGGAT-CTG-----TTTGCCCGA--ACGAA---CAC------------------------GAATCTCGGGCTGATAACCGCTCT----TCAACCTTGGATGA-------GA-----ACG--------TCAGTGTTG-ACGCCATCATC------------------GCAGCATTTCCATATAATG-----A-AA-------------AAACACGTGTGC--G---------------------------------TAGCTGAT---TCTACAATGTTTT-TCC--------------CTCTTTTTCCACAGGCGACATCATCAAACGCATCGATAGCTACTACAAAAGCGG-----------------CCAAACAAAG------------------
droTak1 scf7180000415287:118303-118676 - GAA-----ATACAATGTTTTCGTGCGCGCCGAAAGAAAAGCGGATGTGTTTTTGGGTGAGTTAT---A------------------------------------------------------------GA--------AGA--AAA---CAACCTGGCGGTATCGATTGCCGCACAGAACTGAGCCGCCG-------------TTAGCTAATT------GATTGCTCT-GCGACGCTG----------TTTC-------------------------------------------------------------------GAGTGATAA-----------GGGC---------------------------------CCGGGAT-CTATTCTGTTTGCCCGA--ATGAA---TAC------------------------GAATCTCGGGCTGATAACCGCTCC----GCAACCTTGGATGA-------CA-----ACG--------TCAGTGTTG-ACGCCATCGTC------------------GCAACATTTCCATATTATG-----ACTA-------------GAACACGTGTGC--G---------------------------------CAGCTGAT---TTACTGATGTTTT-CCA-C------------TCATTTTCCCACAGGCGACATCATCAAGCGCATCGATAGCTACTACAAAAGCGG-----------------GCAAACAAAG------------------
droEle1 scf7180000491338:757573-757956 - GAA-----ATACAATGTTTTCGTGCGCGCCGAGAGAAAAGCGGATGTGTTTTTGGGTGAGTTTT---GTA----------------------------------------------------------GAAATTGAGAAAC--AAA---CAACCTGGCGGTATTGATTGCCGCACCGAACTGAGCCTCCG-------------TTAGCTAATG------AATTGCTTTTGCGGCTCTG----------TTTC-------------------------------------------------------------------GAGTGATAA-----------GATCC--------------------------------CCGGGAT-CTGTTCGGTTTGCCCCA--ATGAA---TAT------------------------GAATCTCA-ACTGATAACCGTGCT----TCAACCTTGGACGA-------GA-----ACG--------TCAGCGTTG-ACGCCATCATC------------------GCTACATTTCCATATAATG-----ACAA-------------AAACACGTGTGC--G---------------------------------CAGCTGAC---TCCCGTTTGTTAT-TCC--------------TCATTTCCCCACAGGCGACATTATCAAACGCATCGATAGCTACTACAAAAGCGG-----------------ACAAACAAAG------------------
droRho1 scf7180000779325:5422-5801 - AAA-----ATACAATGTTTTCGTACGCGCCGAAAGAAAAGCAGATGTGTTTTTGGGTGAGTTTT---A------------------------------------------------------------AAAACAAAGTAAC--AAA---CAACCTGGCGTTATTGATTCCCGCACAGAACTGAGTCCCCA-------------TTAGCTAATG------AATTGCTTTTGGGGCTCTG----------TTTC-------------------------------------------------------------------GAGTGATAA-----------GATC---------------------------------CCGGGAT-CTGTTCTGTTTGCCCCA--ATGAA---TAC------------------------AAATCTCG-GCTGATAACCGCGCT----TCAACCTTGGATGG-------AA-----ACG--------TCAGCGTTG-ACGCCATCATC------------------GCTATATTTCCATATAATG-----ACAA-------------AAACACGTGTGC--C---------------------------------AGGCTGAT---TTTCTTATGATTTA--T--------------TTCTTTCCCCACAGGCGACATAATCAAACGAATCGATAGCTACTACAAAAGCGG-----------------ACAAACAAAG------------------
droFic1 scf7180000453925:841562-841945 + GAA-----ATATAATGTTTTCGTCCGCGCCGAAAGAAAAGCGGATGTGTTTTTGGGTGAGTTAT---A------------------------------------------------------------GAAAATTAAAAGC--AAA---CAACCAGGCGCTATTGATTGCCACACAGAACTGAGCCCTCG-------------TTAGCTAATT------GACTGCTCT-GGCGCTCAA----------TTTC-------------------------------------------------------------------GAGTGATAA-----------GAGT---------------------------------CCGTGAT-CTGTTTTGTTTGCCCGA--ATGAA---CAC------------------------GAATCTCG-ACTGATAACCGTGCT----TCAACCTTGGATGG-------AA-----ACG--------TCAGCGTTG-ACGCCATCAAC------------------GCAATATTTCCATATA-TGTATTACCTA-------------AAACACGTGTAC--G---------------------------------CAGCTGAT---TTTCTAATGTCTT-TCT--------------TCAATTCCTCACAGGCGACATCATCAAACGCATCGATAGCTACTACAAAAGTGG-----------------ACAAACGAAG------------------
droKik1 scf7180000302468:134898-135291 + AAA-----ATACAACGTTTTTGTGCGGGCCGAAAGAAAGGCTGATGTTTTCTTGGGTAAGTTAT---GGA----------------------------------------------------------AAAAATAAGCACCCGAAGCTCGAACCTGGTGGTATCGACTGCCGCTCAGAACTGCG-----------------------GTAATA------GGCTG-------GGCTGTGTT--------TTTC----------------------------------------------------------GCC----TCTGGAGATAAC----------GAGGCTCG--------------------CGTC-----CGGGGAT-CTG-----TTTGCCCGA--ATGAC---TGC--------T------------GCTGCATC--T-GCTGATAACCGCGCC----TCAACCTTGGATGG-------GA-----TCG--------TCAGCGTTG-ACGCCATCATC-----------------AGCATCGTC-----GTCGTC-----TCGG-------------TAACACGTGTGC--A---------------------------------CAGCTGGT---TTCCTAATGTTTT-TTCCCTTATTCTCCCCCATGTTTTCCGGCAGGCGACATCATCAAGCGCATCGATAGCTACTACAAAAGCGG-----------------GCAGACAAAG------------------
droAna3 scaffold_12916:9500961-9501324 + AAG-----TTACAATGTATTTGTACGCGCCGAAAGGAAAGCGGATGTGTTTTTGGGTAATT-AT---T------------------------------------------------------------TAAAGAAATTGTG--GAA---CAACCTTGCTATATTGACGGCCGCACTGCACTGACT----A-------------T----TATGT------GATTGCTTT-TGGGCTCGG----------TTTTG--------------------------A------------------------------G------TCGAGAGATAA-----------GGGCC--------------------------------TCGGGGC-CA-------------GAAAATGGAACGAAC------------------------GGAGGCGC-ACTGATAACCAGTGTCAGGTCGGCCGAGGAG-C-------GC-----GCG--------TCAGAGCTGAACGCCATCATC------------------TCG--------CTGGGATG-----T-GT-------------TAACACGTGTGT--T---------------------------------CAGCTGTT---TTCCTAATGCCAT-TCC--------------GTACTTTCCGACAGGCGACATCATTAAACGCATCGACAGCTACTACAAAAATGG-----------------TCCGACAAAG------------------
droBip1 scf7180000396580:1534111-1534487 - AAAG----TTACAATGTATTCGTACGAGCCGAAAGAAAAGCGGATGTGTTTTTGGGTGAGTTAT---T------------------------------------------------------------CAAAGCAATTATT--AAA---CAACCTTGCTATATTGACGGCCGCACTGCACTGACT----A-------------T----TATGT------GATTGCTTT-TGGGCTTGG----------GTTTG--------------------------A------------------------------G------TCGAGAGATAA-----------GGGC---------------------------------CTCGGCTGCT-GCCTGTTTGCCAGAAAATGGAACGAAC------------------------GAAAGCGC-ACTGATAACCAATGT----CAGA--TCGGCCGA-------GGAGCCCGCG--------TCAGAGCTG-ACGCCATCATC--------------------------TCCCTGGGATG-----T-GT-------------TAACACGTGTGT--C---------------------------------CAGCTGTT---TTCCTAATGCTTT-TTC--------------GTATTTCCCAACAGGCGACATAATCAAGCGCATCGATAGCTACTACAAAAATGG-----------------CCAGAACAAA------------------
dp5 4_group3:2860053-2860467 - GAAGAGCCCTACAATGTATTCATACGCGCCGAACGCAAAGCAGATGTATTTTTGGGTGAGTTTG------------------------------------------------------------------------TTTAT--GGG---CAACCGGGCGAGATCGATTCTCACACAAAACTGAGGGCACACACAAAAAGGCACT----TATAT------GATTGTTTG----------TTGTTTC-TGGCAT-------------------------------------------------------------------GCGAGATAACAGGCAGCAAAAAGC---------------------------------CTGGGAT-CTGATCTGCCTGCCTGC--TTGCC---TGCTTGCCTGCTCGGTTGTCCACAG--AAAAATGT-ACTGATAACCGTG------ACAACCTTGGAGTGAGGTAGAGG-----AAG--------TCGATCTGA-GCGT---CATC------------------GCTGCCTGCCCGC----TG-----ACGC-------------AAGCACGTGTGTAAGCAAT-------G---------------------CATCTAAT---CCCCCACTGC-----------------------CTTTCGTTACAGGCGACATCATCAAGCGCATTGATAGCTACTATAAGAATGG-----------------GCAAGTCAAG------------------
droPer2 scaffold_1:4344409-4344817 - GAAGAGCCCTACAATGTATTCATACGCGCCGAACGCAAAGCAGATGTATTTTTGGGTGAGTTTG------------------------------------------------------------------------TTTAT--GGG---CAACCGGGCGAGATCGATTCTCACACAAAACTGAGGGCACACACAAAAAGGCACT----TATAT------GATTGTTTG----------TTGTTTC-TGGCAT-------------------------------------------------------------------GCGAGATAACAGGCAGCAAAAAGC---------------------------------CTGGGAT-CTGATCTGCCTGCCTGC--TTGCC---TGC--------TCGGTTGTCCACAG--AAAAATGT-ACTGATAACCGAG------ACAACCTTGGAGTGAGGTAGAGG-----AAG--------TCGATCTGA-GCGT---CATC------------------GCTGCCTGCCCGC----TG-----ACGC-------------AAGCACGTGTGTAAGCAAT-------G---------------------CATCTAAT---CCCCCACTGCC---------------------CCACTCATTACAGGCGACATCATCAAGCGCATTGATAGCTACTATAAGAATGG-----------------GCAAGTCAAG------------------
droWil2 scf2_1100000004516:2810547-2810851 + CAAT---TATTTAATATATTTATAAGAGCCGAACGCAAGGCAGATGTCTTTCTAGGTGAGTAC----A------------------------------------------------------------CAA------TGCC--TG------------------------------AAAACTGAATAATTA-------------T---------------AATCT-------ATATAA-------------------CATACATATTGAGCATTAGCATTA------------------------------G--------TGATGATAA-----------GAAGCTCTGATAACCCAGAGGGCGTTCTCATCGATGACTGCTGT-TTGTTTTATTTGACGCA--ACTAA---AAC------------------------ACTTCC----------------------------------------------------T--------TCTTCGTCT-CCTCCTCCATC------------------CA--------------------------------------------------------------------------------------------------------------------------------------CCCATTTAGGCGAGATCATCAAACGCATTGATAGCTACTACAAAAATGCTCCACCCAGCATGGGCAGCAGTCAGAA------------------
droVir3 scaffold_12963:13844153-13844652 - dvi_11663 CGC-----ATTCAATGTATTTATACGCGCCGAACGCAAAGCTGATGTTTTCCTGAGTAAGTGTT---ATATATATATTAATGTATGTATGTGCCTTTTGTTGTTTGTCGCAGCAAAACGAATCAATTGAAAGT--TGTGAA--AAG---CAAACTGGCGATCGCGCTTGACGCATACAACTGAACAGA---------------------GAATAATTATAATTA-------AGATGCGTTGTTTG-TGGCACACGAAA------------------AACGAAAACAA-GACAAGCTAACCGGTGCTCTATGCT------GGCTGATAAC---G------CGGC---------------------------------CCG---------------------------------------------------------------CCTT-TCTGATAACCGTG------TCAACCTTGAGCGT-------CA-----TCGCAGCGAAATGATTGTTG-ACGCCATCCAATCCGGAGCACACACAAAAGAACCGTTGTCATCGG------------CGGCGACAACAACAAGCACGTGTTC--GTTCT-------G---------------------AAGCTAACAATTCC-----TGTTTT--C--------------GTTGTCAATTGTAGGAGATATCATAAAACGAATCGATAGCTACTATTCGCATGG-----------------ACGAACTGAACGTCCGCTGGCTTCGCTG
droMoj3 scaffold_6500:5807586-5808074 + GCCG---CTTACAATGTTTTCATACGCGCCGAGCGTAAAGCAGATGTTTTTCTTGGTAAGTTTC---AA--------------------------------------C---ACACTT-----------CTAATCAATTAAA--AGA---CAACTTGGCGAACGCGCTGGACGCATATAACTGAACAAA----------------------TAT------AATTA-------AGATGCGTCGTTTTCTGAACCACGAAAAAAACATAGAAAAACAAAAATAAAAACAACAACAAGCTAACCGGTGCTCGGGGCTCGCTTGTAGAGATAA-----------CGC------------------------------------------------TGCCTGCCTG--------------------------------------------TG-CTTGATAACCGTA------TCAACCTTGGGCGT-------CA-----TTTGAGCGGAATGATTGTTG-ACGCCATCCAA-----------------AGAGCTGCTTTTCTGCACCA-----ACGGCAGCAACAACAACAATCATACGTAT--TATCGGAATCCTGCTTCTAGAAACTACTTCCGGTCAATTCAA---TTAC----CATTTT--G--------------TTGCTCATTTACAGGTGAAATTATTAAGCGCATCGATAGCTACTATTCCCATGCTGT--------------GCAC---GAGAGCCCCTTGGCTTCATTG
droGri2 scaffold_15126:6044083-6044218 + CGA-----ATACAATGTTTTTGTACGCGCCGAACGCAAAGCTGATGTTTTTCTGGGTGAGTTATTTTT-----------------------------------TCTACTTAACGAAACAAATCAATTAGAAAT--TGTAAA--AAT---GAACTTGTCGACCGCGCTTGACGCATAAAACTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAA-----GTACAATGTGTTTGTGCGCGCCGAAAGAAAAGCGGATGTGTTTCTGGGTAAGTTTT---A------------------------------------------------------------GTAACAAAATAAC--AAA---CAACCTGGCGGTATTGATTGCCACACAGAACTGAGTCCCCG-------------TTAGCTAATT------AAATGCTCT-GGGACTGGG----------TTTC-------------------------------------------------------------------GACTGATAA-----------GGGC---------------------------------CCGTGAT-CTGTTTCGTTTGCCCCA--ATGAA---TAC------------------------GAATCTCG-ACTGATAACCGCGCT----TCAACCTTGGATGG-------AA-----TCG--------TCAGCGTTG-ACGCCATCATC------------------GATACATTTCCATAGAGCA-----AGAA-------------AAACACGTGTGC--G---------------------------------TAATTGAT---TTTGAATTTATTTT--C--------------TATTTCCCTCACAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGG-----------------ACAAACAAAG------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................TTC-------------------------------------------------------------------GACTGATAA-----------GGGC---------------------------------CCGTGAT-C.....................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTACTACAAAACCGG-----------------ACA.........................2011.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCG-ACTGATAACCG............................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCG-ACTGATAACCGCGCT----....................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..................................GAAAAGCGGATGTGTTTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCATCGACAGCTACTACAAAAC................................................2611.00100010000000000000
............................................................................................................................................................GCGGTATTGATTGCCACACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
.........................................................................................................................................................................................................................................................TTC-------------------------------------------------------------------GACTGATAA-----------GGGC---------------------------------CCG...........................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
droSec2
GAA-----GTACAATGTCTTTGTGCGCGCCGAAAGAAAGGCGGATGTGTTTCTGGGTAAGTTAT---A------------------------------------------------------------GTAACAAAATGAC--AAA---CAACCTGGCGGTATTGATTGCCACACAGAACTGAGTCCCCG-------------TTAGCTAATT------AAATGCTCT-GAGACTGGG----------TTTC-------------------------------------------------------------------GACAGATAA-----------GGGC---------------------------------CCGTGAT-CTGTTTCGTTTGCCCCA--ATGAA---TAC------------------------GAATCTCG-ACTGATAACCGCGCT----TGAACCTTGGATGG-------AA-----TCG--------TCAGCGTTG-ACGCCATCATC------------------GATACATTTCCATAGAGCA-----AGAA-------------AAACACGTGTGC--G---------------------------------CAATTGAA---TTTGAATTTATTTT--C--------------TATTTCCCTCACAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGG-----------------ACAAACAAAG------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........TACAATGTCTTTGTGCGCGCCGAAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
dm3
CAA-----GTACAATGTGTTTGTTCGCGCCGAAAGAAAAGCGGATGTGTTTCTGGGTGAGTTAT---A------------------------------------------------------------GTAACAAAATAAC--AAA---CAACCTGGCGGTATTGATTGCCACACAGTACTGAGTCCCCG-------------TTAGCTAATT------AAATGCTCT-GAGACTGGG----------TTTCG------------------------------------------------------------------GACTGATAA-----------GGGC---------------------------------CCGTGAT-CTGTTTCGTTTGCCCCA--ATGAA---TAC------------------------GAATCTCT-ACTGATAACCGCGCT----TCAACCTTGGATGG-------AA-----TCG--------TCAGCGTTG-ACGCCATCATC------------------GATACATTTCCATAGGGCA-----AGAA-------------AAACACGTGTGC--G---------------------------------CAATTGAT---TTAGAAATTGTTTT--C--------------TATTTCCCTCACAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGG-----------------ACAAACAAAG------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................AGAAAAGCGGATGTGTTTCTGGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGAAAAGCGGATGTGTTTCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTTGGATGG-------AA-----TCG--------TCA..........................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TGTGTTTGTTCGCGCCGAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................CTGGG----------TTTCG------------------------------------------------------------------GACTGATAA-----------GG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCCGAAAGAAAAGCGGATGTGTTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AAAGCGGATGTGTTTCTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................GATGTGTTTCTGGGTGAGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AAA---CAACCTGGCGGTATTGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................CGAAAGAAAAGCGGATGTGTTTCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................T------AAATGCTCT-GAGACTGGG----------TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGATGG-------AA-----TCG--------TCAGCGT......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAACGCATCGACAGCTACTACA....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TAA-----------GGGC---------------------------------CCGTGAT-CTGTTTC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ATGTGTTTCTGGGTGAGTTAT---A------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TAC------------------------GAATCTCT-ACTGATAACC.............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TGGG----------TTTCG------------------------------------------------------------------GACTGATAA-----------GGGC---------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................................................................................................................................................................................................T-GAGACTGGG----------TTTCG------------------------------------------------------------------GACTGAATC-----------...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TGTGTTTCTGGGTGAGTTAT---A------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CGTGAT-CTGTTTCGTTTGCC........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTGGATGG-------AA-----TCG--------TCAGC........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................C--AAA---CAACCTGGCGGTATTGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGC--G---------------------------------CAATTGAT---TTAGA.............................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGAAAAGCGGATGTGTTTCTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AAAAGCGGATGTGTTTCTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATAGGGCA-----AGAA-------------AAACACGTGTGC--...............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGGCA-----AGAA-------------AAACACG......................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT----TCAACCTTGGATGG-------AA-----TC......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
droEre2
GAA-----ATACAATGTGTTTGTGCGCGCCGAAAGAAAAGCGGATGTGTTCCTGGGTGAGTTAA---A------------------------------------------------------------GTGACAAAATAAC--AAA---CAACCTGGCGGTATTGATTGCCACACAGAACTGAGCCCCCG-------------TTAGCTAAAT------AAATGCTGT-GAGTCTGCG----------TTTC-------------------------------------------------------------------GACTGATAA-----------G-GC---------------------------------CCGGGAT-CTGCTTTGTTTGCCCCA--ATGAA---TAC------------------------GAATCTCG-ACTGATAACCGCACT----TCAACCTTGGATGG-------AA-----TCG--------TCAGCGTTG-ACGCCATCATC------------------GAT--------------CT-----AAAA-------------AAACACGTGTGC--G---------------------------------GAGCTAAT---TTACTAATTGTTTT--C--------------TATTTTTCCCAAAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGG-----------------GCAAACCAAG------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................AAGCGGATGTGTTCCTGGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGACAGCTACTACAAAACCGG-----------------GC..........................2511.0011000000
droYak3
GAA-----GTACAATGTGTTTGTGCGCGCCGAAAGAAAAGCGGATGTGTTTCTGGGTGAGTTAT---A------------------------------------------------------------GTGACAAAATAAC--AAA---CAACCTGGCGGTAATGATTGCCACACAGAACTGAGCCCCCG-------------TTAGCTAATT------AAATGCTCT-GAGACTGGG----------TTTC-------------------------------------------------------------------GACTGATAA-----------GGGC---------------------------------CCGAGAT-CTGTTTTGTTTGCCCCA--ATGAA---TAC------------------------GAATCTCG-ACTGATAACCGCGCT----TCAACCTTCGATGG-------AA-----TCG--------TCAGCGTTG-ACGCCATCATC------------------ATTCCATTTACATGTAGCA-----AAAA-------------ATACACGTGTGC--G---------------------------------GAGCTGAT---TTTGTAATGGCTTT--A--------------TATTTTCCCCACAGGCGACATCATCAAACGCATCGACAGCTACTACAAAACCGG-----------------GCAAACAAAG------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCATCAAACGCATCGAC..............................................................2111.00100000010000
..............................GAAAGAAAAGCGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1530.33100000000001
droEug1
GAA-----GTACAATGTTTTCGTACGCGCCGAAAGAAAAGCGGATGTCTTCTTGGGTAAGTTAT---G------------------------------------------------------------AAAACTAAGTAAC--AAA---CAACCTGGCGGTATCGATCGTCGCAGAGAACTGAGCC-CCG-------------TTAGCTAATT------AATTGCTCT-GGGACTCTG----------GGTT-------------------------------------------------------------------GAGTGATAA-----------GAGC---------------------------------CCGGGAT-CTGTTATGTTTGTCCGA--ATGAA---TAC------------------------GAATCTCG-GCTGATAACCGTGCT----TCAACCTTGGATGA-------AA-----ACG--------TCAGCGTTG-ACGCCATCATC------------------TCTACATTTTCATATAATG-----ACAA-------------AAACACGTGTGC--G---------------------------------CAACTGAT---TTTCTAATGTTTT-TCC--------------TCATTTTCCCACAGGCGACATCATCAAGCGCATCGATAGCTACTACAAAAGCGG-----------------GCAAACAAAG------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GAA-----GTACAATGTGTTCGTACGCGCCGAAAGAAAAGCGGATGTGTTTTTGGGTGAGTTATTCCA------------------------------------------------------------TAAA-CAAGTAAC--AAA---CAACCCGGCGGTATCGATTGCCACACAGAACTGAGCCCCCG-------------TTAGCTAATT------GATTGCTCT-GGTGCTCTG----------TTTC-------------------------------------------------------------------GAGTGATAA-----------CAGC---------------------------------CCGGGAT-CTG-----TTTGCCCGA--ACGAA---CAC------------------------GAATCTCGGGCTGATAACCGCTCT----TCAACCTTGGATGA-------GA-----ACG--------TCAGTGTTG-ACGCCATCATC------------------GCAGCATTTCCATATAATG-----A-AA-------------AAACACGTGTGC--G---------------------------------TAGCTGAT---TCTACAATGTTTT-TCC--------------CTCTTTTTCCACAGGCGACATCATCAAACGCATCGATAGCTACTACAAAAGCGG-----------------CCAAACAAAG------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GAA-----ATACAATGTTTTCGTGCGCGCCGAAAGAAAAGCGGATGTGTTTTTGGGTGAGTTAT---A------------------------------------------------------------GA--------AGA--AAA---CAACCTGGCGGTATCGATTGCCGCACAGAACTGAGCCGCCG-------------TTAGCTAATT------GATTGCTCT-GCGACGCTG----------TTTC-------------------------------------------------------------------GAGTGATAA-----------GGGC---------------------------------CCGGGAT-CTATTCTGTTTGCCCGA--ATGAA---TAC------------------------GAATCTCGGGCTGATAACCGCTCC----GCAACCTTGGATGA-------CA-----ACG--------TCAGTGTTG-ACGCCATCGTC------------------GCAACATTTCCATATTATG-----ACTA-------------GAACACGTGTGC--G---------------------------------CAGCTGAT---TTACTGATGTTTT-CCA-C------------TCATTTTCCCACAGGCGACATCATCAAGCGCATCGATAGCTACTACAAAAGCGG-----------------GCAAACAAAG------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GAA-----ATACAATGTTTTCGTGCGCGCCGAGAGAAAAGCGGATGTGTTTTTGGGTGAGTTTT---GTA----------------------------------------------------------GAAATTGAGAAAC--AAA---CAACCTGGCGGTATTGATTGCCGCACCGAACTGAGCCTCCG-------------TTAGCTAATG------AATTGCTTTTGCGGCTCTG----------TTTC-------------------------------------------------------------------GAGTGATAA-----------GATCC--------------------------------CCGGGAT-CTGTTCGGTTTGCCCCA--ATGAA---TAT------------------------GAATCTCA-ACTGATAACCGTGCT----TCAACCTTGGACGA-------GA-----ACG--------TCAGCGTTG-ACGCCATCATC------------------GCTACATTTCCATATAATG-----ACAA-------------AAACACGTGTGC--G---------------------------------CAGCTGAC---TCCCGTTTGTTAT-TCC--------------TCATTTCCCCACAGGCGACATTATCAAACGCATCGATAGCTACTACAAAAGCGG-----------------ACAAACAAAG------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAA-----ATACAATGTTTTCGTACGCGCCGAAAGAAAAGCAGATGTGTTTTTGGGTGAGTTTT---A------------------------------------------------------------AAAACAAAGTAAC--AAA---CAACCTGGCGTTATTGATTCCCGCACAGAACTGAGTCCCCA-------------TTAGCTAATG------AATTGCTTTTGGGGCTCTG----------TTTC-------------------------------------------------------------------GAGTGATAA-----------GATC---------------------------------CCGGGAT-CTGTTCTGTTTGCCCCA--ATGAA---TAC------------------------AAATCTCG-GCTGATAACCGCGCT----TCAACCTTGGATGG-------AA-----ACG--------TCAGCGTTG-ACGCCATCATC------------------GCTATATTTCCATATAATG-----ACAA-------------AAACACGTGTGC--C---------------------------------AGGCTGAT---TTTCTTATGATTTA--T--------------TTCTTTCCCCACAGGCGACATAATCAAACGAATCGATAGCTACTACAAAAGCGG-----------------ACAAACAAAG------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GAA-----ATATAATGTTTTCGTCCGCGCCGAAAGAAAAGCGGATGTGTTTTTGGGTGAGTTAT---A------------------------------------------------------------GAAAATTAAAAGC--AAA---CAACCAGGCGCTATTGATTGCCACACAGAACTGAGCCCTCG-------------TTAGCTAATT------GACTGCTCT-GGCGCTCAA----------TTTC-------------------------------------------------------------------GAGTGATAA-----------GAGT---------------------------------CCGTGAT-CTGTTTTGTTTGCCCGA--ATGAA---CAC------------------------GAATCTCG-ACTGATAACCGTGCT----TCAACCTTGGATGG-------AA-----ACG--------TCAGCGTTG-ACGCCATCAAC------------------GCAATATTTCCATATA-TGTATTACCTA-------------AAACACGTGTAC--G---------------------------------CAGCTGAT---TTTCTAATGTCTT-TCT--------------TCAATTCCTCACAGGCGACATCATCAAACGCATCGATAGCTACTACAAAAGTGG-----------------ACAAACGAAG------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAA-----ATACAACGTTTTTGTGCGGGCCGAAAGAAAGGCTGATGTTTTCTTGGGTAAGTTAT---GGA----------------------------------------------------------AAAAATAAGCACCCGAAGCTCGAACCTGGTGGTATCGACTGCCGCTCAGAACTGCG-----------------------GTAATA------GGCTG-------GGCTGTGTT--------TTTC----------------------------------------------------------GCC----TCTGGAGATAAC----------GAGGCTCG--------------------CGTC-----CGGGGAT-CTG-----TTTGCCCGA--ATGAC---TGC--------T------------GCTGCATC--T-GCTGATAACCGCGCC----TCAACCTTGGATGG-------GA-----TCG--------TCAGCGTTG-ACGCCATCATC-----------------AGCATCGTC-----GTCGTC-----TCGG-------------TAACACGTGTGC--A---------------------------------CAGCTGGT---TTCCTAATGTTTT-TTCCCTTATTCTCCCCCATGTTTTCCGGCAGGCGACATCATCAAGCGCATCGATAGCTACTACAAAAGCGG-----------------GCAGACAAAG------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AAG-----TTACAATGTATTTGTACGCGCCGAAAGGAAAGCGGATGTGTTTTTGGGTAATT-AT---T------------------------------------------------------------TAAAGAAATTGTG--GAA---CAACCTTGCTATATTGACGGCCGCACTGCACTGACT----A-------------T----TATGT------GATTGCTTT-TGGGCTCGG----------TTTTG--------------------------A------------------------------G------TCGAGAGATAA-----------GGGCC--------------------------------TCGGGGC-CA-------------GAAAATGGAACGAAC------------------------GGAGGCGC-ACTGATAACCAGTGTCAGGTCGGCCGAGGAG-C-------GC-----GCG--------TCAGAGCTGAACGCCATCATC------------------TCG--------CTGGGATG-----T-GT-------------TAACACGTGTGT--T---------------------------------CAGCTGTT---TTCCTAATGCCAT-TCC--------------GTACTTTCCGACAGGCGACATCATTAAACGCATCGACAGCTACTACAAAAATGG-----------------TCCGACAAAG------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC--------------GTACTTTCCGACAGGCGAC................................................................................2111.001100000
droBip1
AAAG----TTACAATGTATTCGTACGAGCCGAAAGAAAAGCGGATGTGTTTTTGGGTGAGTTAT---T------------------------------------------------------------CAAAGCAATTATT--AAA---CAACCTTGCTATATTGACGGCCGCACTGCACTGACT----A-------------T----TATGT------GATTGCTTT-TGGGCTTGG----------GTTTG--------------------------A------------------------------G------TCGAGAGATAA-----------GGGC---------------------------------CTCGGCTGCT-GCCTGTTTGCCAGAAAATGGAACGAAC------------------------GAAAGCGC-ACTGATAACCAATGT----CAGA--TCGGCCGA-------GGAGCCCGCG--------TCAGAGCTG-ACGCCATCATC--------------------------TCCCTGGGATG-----T-GT-------------TAACACGTGTGT--C---------------------------------CAGCTGTT---TTCCTAATGCTTT-TTC--------------GTATTTCCCAACAGGCGACATAATCAAGCGCATCGATAGCTACTACAAAAATGG-----------------CCAGAACAAA------------------SizeHit CountTotal NormTotal
No Reads
dp5
GAAGAGCCCTACAATGTATTCATACGCGCCGAACGCAAAGCAGATGTATTTTTGGGTGAGTTTG------------------------------------------------------------------------TTTAT--GGG---CAACCGGGCGAGATCGATTCTCACACAAAACTGAGGGCACACACAAAAAGGCACT----TATAT------GATTGTTTG----------TTGTTTC-TGGCAT-------------------------------------------------------------------GCGAGATAACAGGCAGCAAAAAGC---------------------------------CTGGGAT-CTGATCTGCCTGCCTGC--TTGCC---TGCTTGCCTGCTCGGTTGTCCACAG--AAAAATGT-ACTGATAACCGTG------ACAACCTTGGAGTGAGGTAGAGG-----AAG--------TCGATCTGA-GCGT---CATC------------------GCTGCCTGCCCGC----TG-----ACGC-------------AAGCACGTGTGTAAGCAAT-------G---------------------CATCTAAT---CCCCCACTGC-----------------------CTTTCGTTACAGGCGACATCATCAAGCGCATTGATAGCTACTATAAGAATGG-----------------GCAAGTCAAG------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCACGTGTGTAAGCAAT-------G---------------------.............................................................................................................................................2011.0010000001000
.................................................................................................................................................................................................................................................................................................................................................AAAAGC---------------------------------CTGGGAT-CTGATCTG..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................AT-CTGATCTGCCTGCCTGC--TTG................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................................................................................................................................................................................................T----TATAT------GATTGTTTG----------TTGTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................GGTGAGTTTG------------------------------------------------------------------------TTTAT--GGG---CAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................AGTTTG------------------------------------------------------------------------TTTAT--GGG---CAACCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTGA-GCGT---CATC------------------GCTGC.................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGA-GCGT---CATC------------------GCTGCCT...............................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTGCCTGCCTGC--TTG................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................CAGCAAAAAGC---------------------------------CTGGGAT-CTG...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................TG----------TTGTTTC-TGGCAT-------------------------------------------------------------------GCGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010100000000
droPer2
GAAGAGCCCTACAATGTATTCATACGCGCCGAACGCAAAGCAGATGTATTTTTGGGTGAGTTTG------------------------------------------------------------------------TTTAT--GGG---CAACCGGGCGAGATCGATTCTCACACAAAACTGAGGGCACACACAAAAAGGCACT----TATAT------GATTGTTTG----------TTGTTTC-TGGCAT-------------------------------------------------------------------GCGAGATAACAGGCAGCAAAAAGC---------------------------------CTGGGAT-CTGATCTGCCTGCCTGC--TTGCC---TGC--------TCGGTTGTCCACAG--AAAAATGT-ACTGATAACCGAG------ACAACCTTGGAGTGAGGTAGAGG-----AAG--------TCGATCTGA-GCGT---CATC------------------GCTGCCTGCCCGC----TG-----ACGC-------------AAGCACGTGTGTAAGCAAT-------G---------------------CATCTAAT---CCCCCACTGCC---------------------CCACTCATTACAGGCGACATCATCAAGCGCATTGATAGCTACTATAAGAATGG-----------------GCAAGTCAAG------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAAT---TATTTAATATATTTATAAGAGCCGAACGCAAGGCAGATGTCTTTCTAGGTGAGTAC----A------------------------------------------------------------CAA------TGCC--TG------------------------------AAAACTGAATAATTA-------------T---------------AATCT-------ATATAA-------------------CATACATATTGAGCATTAGCATTA------------------------------G--------TGATGATAA-----------GAAGCTCTGATAACCCAGAGGGCGTTCTCATCGATGACTGCTGT-TTGTTTTATTTGACGCA--ACTAA---AAC------------------------ACTTCC----------------------------------------------------T--------TCTTCGTCT-CCTCCTCCATC------------------CA--------------------------------------------------------------------------------------------------------------------------------------CCCATTTAGGCGAGATCATCAAACGCATTGATAGCTACTACAAAAATGCTCCACCCAGCATGGGCAGCAGTCAGAA------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................ATTA------------------------------G--------TGATGATAA-----------GAAGCTCTGATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2613.00301020
....................................................................................................................................................................................................................................................................................ATTA------------------------------G--------TGATGATAA-----------GAAGCTCTGATAA......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAACGCATTGATAGCTACT.......................................................2211.00101000
..........................................GATGTCTTTCTAGGTGAGTAC----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
droVir3
CGC-----ATTCAATGTATTTATACGCGCCGAACGCAAAGCTGATGTTTTCCTGAGTAAGTGTT---ATATATATATTAATGTATGTATGTGCCTTTTGTTGTTTGTCGCAGCAAAACGAATCAATTGAAAGT--TGTGAA--AAG---CAAACTGGCGATCGCGCTTGACGCATACAACTGAACAGA---------------------GAATAATTATAATTA-------AGATGCGTTGTTTG-TGGCACACGAAA------------------AACGAAAACAA-GACAAGCTAACCGGTGCTCTATGCT------GGCTGATAAC---G------CGGC---------------------------------CCG---------------------------------------------------------------CCTT-TCTGATAACCGTG------TCAACCTTGAGCGT-------CA-----TCGCAGCGAAATGATTGTTG-ACGCCATCCAATCCGGAGCACACACAAAAGAACCGTTGTCATCGG------------CGGCGACAACAACAAGCACGTGTTC--GTTCT-------G---------------------AAGCTAACAATTCC-----TGTTTT--C--------------GTTGTCAATTGTAGGAGATATCATAAAACGAATCGATAGCTACTATTCGCATGG-----------------ACGAACTGAACGTCCGCTGGCTTCGCTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................TAACCGGTGCTCTATGCT------GGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................A-GACAAGCTAACCGGTGCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATTGTTG-ACGCCAT............................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................GCTTGACGCATACAACTGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................GCCTTTTGTTGTTTGTCGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................CCTGAGTAAGTGTT---ATATATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................GCCTTTTGTTGTTTGTCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
...................................CAAAGCTGATGTTTTCCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACCTTGAGCGT-------CA-----TCGCA...................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................GAAAGT--TGTGAA--AAG---CAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................AAACAA-GACAAGCTAACCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCAATTGTAGGAGATATC.............................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT-------G---------------------AAGCTAACAATTCC-----TGTTTT--C--------------G..................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................CTTTTGTTGTTTGTCGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................ATGCGTTGTTTG-TGGCACACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
droMoj3
GCCG---CTTACAATGTTTTCATACGCGCCGAGCGTAAAGCAGATGTTTTTCTTGGTAAGTTTC---AA--------------------------------------C---ACACTT-----------CTAATCAATTAAA--AGA---CAACTTGGCGAACGCGCTGGACGCATATAACTGAACAAA----------------------TAT------AATTA-------AGATGCGTCGTTTTCTGAACCACGAAAAAAACATAGAAAAACAAAAATAAAAACAACAACAAGCTAACCGGTGCTCGGGGCTCGCTTGTAGAGATAA-----------CGC------------------------------------------------TGCCTGCCTG--------------------------------------------TG-CTTGATAACCGTA------TCAACCTTGGGCGT-------CA-----TTTGAGCGGAATGATTGTTG-ACGCCATCCAA-----------------AGAGCTGCTTTTCTGCACCA-----ACGGCAGCAACAACAACAATCATACGTAT--TATCGGAATCCTGCTTCTAGAAACTACTTCCGGTCAATTCAA---TTAC----CATTTT--G--------------TTGCTCATTTACAGGTGAAATTATTAAGCGCATCGATAGCTACTATTCCCATGCTGT--------------GCAC---GAGAGCCCCTTGGCTTCATTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................GA---CAACTTGGCGAACGCGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------------GCAC---GAGAGCCCCTTGGC.......2111.001000100
droGri2
CGA-----ATACAATGTTTTTGTACGCGCCGAACGCAAAGCTGATGTTTTTCTGGGTGAGTTATTTTT-----------------------------------TCTACTTAACGAAACAAATCAATTAGAAAT--TGTAAA--AAT---GAACTTGTCGACCGCGCTTGACGCATAAAACTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:34 PM