ID:

dsi_22033

Coordinate:

2r:4807274-4807326 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [2r_4807172_4807273_+]; CDS [2r_4807172_4807273_+]; CDS [2r_4807327_4807398_+]; exon [2r_4807327_4807567_+]; intron [2r_4807274_4807326_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------################################################## ATCTGCTGCTCGGCATGGCCGTGATTGCCATGTGCTTCAATTTGATGCAGGTAAATTGAACAGCAATAGCCCCTTTATCGTTTCTAACGCACTTTTTTTGCAGGAGCAGGTCGTTCACAACATTCGGGCGATCAAGCGGGGATTCAAGGCCTG ************************************************(((((..(((..((..(((..............)))..))..))).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR902008 ovaries
...............................................................................................................CGTTCACAACATTCGGGC........................	18	0	1	3.00	3	3	0	0	0	0
....................................................................................................................ACAACAGTCCGACGATCAA..................	19	3	19	0.26	5	0	0	0	3	2
..............................................................................................TTTTTGCAAGAGCAGG...........................................	16	1	4	0.25	1	0	0	1	0	0
....GTTGCTCGGCATGGC......................................................................................................................................	15	1	8	0.13	1	0	1	0	0	0
..............GTAGCCGTGATTGCCA...........................................................................................................................	16	2	20	0.10	2	0	2	0	0	0
..............................................................................................................................GGGGATGTAGCGGGGATT.........	18	3	20	0.05	1	0	1	0	0	0

Anti-sense strand reads

TAGACGACGAGCCGTACCGGCACTAACGGTACACGAAGTTAAACTACGTCCATTTAACTTGTCGTTATCGGGGAAATAGCAAAGATTGCGTGAAAAAAACGTCCTCGTCCAGCAAGTGTTGTAAGCCCGCTAGTTCGCCCCTAAGTTCCGGAC ************************************************(((((..(((..((..(((..............)))..))..))).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body	M023 head	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo
......................................................................GGGAAATAGCAATGA....................................................................	15	1	4	0.75	3	3	0	0	0	0	0
.....................................................................GGGGAAATAGCAATGA....................................................................	16	1	2	0.50	1	0	1	0	0	0	0
.........................................................CTTGTCGTCATCAGGGAAA.............................................................................	19	2	2	0.50	1	0	0	1	0	0	0
............CGTACAGGCAGTAACGGTCC.........................................................................................................................	20	3	10	0.30	3	0	0	0	3	0	0
..........GCCGAACCGGCGCTAACG.............................................................................................................................	18	2	4	0.25	1	0	1	0	0	0	0
.................................................................................................ACAGTCCTCGTCCAACAAG.....................................	19	3	20	0.05	1	0	0	0	0	0	1
.......................................................................GGAAATAGCAATGAATACG...............................................................	19	3	20	0.05	1	0	0	0	0	1	0

Generated: 04/23/2015 at 05:21 AM