ID:

dsi_22003

Coordinate:

3l:7986121-7986270 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.0 -8.9 -8.6

Flybase annnotation

Antisense to CDS [3l_7986307_7987218_-]; three_prime_UTR [3l_7985545_7986157_+]; exon [3l_7985044_7986157_+]; Antisense to three_prime_UTR [3l_7986149_7986306_-]; Antisense to exon [3l_7986149_7987218_-]

No Repeatable elements found

Sense Strand Reads

#######################################################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCACACCCCGATTCTAGAAGATAAGTAGGATTTTCCAGTTGCTGTAGTTGGTAGACCATTAAAAAAGAGATTTTTTTCTGCGAACTAATCTTACCCGACAAGTATTTTACTATTTATATACATGGCTTATCCTACGCTTAATCTACTCTAGTATACATCCATATATACCTAAGACTATATTTGCACCTTTGCTTATCAGCTAGATCAACTAGATTGGGCGCCCGAATAATCCTTTTCACCTGGCCAGCG
*****************************************************************************..((((((.((.(((((..............(((((...........(((.........)))..........)))))................))))).))..))))))...*************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
SRR553487
NRT_0-2 hours eggs
SRR553486
Makindu_3 day-old ovaries
M024
male body
SRR553485
Chicharo_3 day-old ovaries
M023
head
O001
Testis
SRR902008
ovaries
SRR618934
dsim w501 ovaries
SRR553488
RT_0-2 hours eggs
M025
embryo
O002
Head
........................................TGCTGTAGTTCGTAGACCATC............................................................................................................................................................................................. 21 2 1 7.00 7 6 0 0 0 1 0 0 0 0 0 0 0
..........................TAGGATTTTCCAGTTGCTGTA........................................................................................................................................................................................................... 21 0 1 3.00 3 0 2 0 0 1 0 0 0 0 0 0 0
..................................TCCAGTTGCTGTAGTTGGTAGACCA............................................................................................................................................................................................... 25 0 1 3.00 3 0 0 1 0 0 0 0 1 1 0 0 0
.................................TTCCAGTTGCTGTAGTTGGTA.................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 0 2 0 1 0 0 0 0 0 0
...................................CCAGTTGCTGTAGTTGGTAGA.................................................................................................................................................................................................. 21 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0
.......................................TTGCTGTAGTTCGTAGACCATC............................................................................................................................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................TTGCTGTAGTTCGTAGACCATT............................................................................................................................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCTGCGAACTAATCTTACCCG........................................................................................................................................................ 21 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0
.......................................TTGCTGTAGTTCGTAGACCAT.............................................................................................................................................................................................. 21 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
......................................TTTGCTGTAGTTCGTAGACCAT.............................................................................................................................................................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................TTGCTGTAGTTGGTAGACCAT.............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........ATTCTAGAAGATAAGTAGGAT.......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...............TAGAAGAGAAGTAGGATTTTCCAGTTGC............................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................TTTCCAGTTGCTGTAGTTGGTAGACCAT.............................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......CCCCGATTCTAGAAGATAAGTAGGA........................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................TCCAGTTGCTGTAGTTGGTAGACCATTA............................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TTTGCTGTAGTTCGTAGACCA............................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............TTCTAGAAGATAAGTAGGATTTTCA..................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...............TAGAAGATAAGTAGGATTTTCCAGTTGC............................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGATCAACTAGATTGGGCGC............................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................CTGTAGTTGGTAGACCATTAA........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................TGCTGTAGTTCGTAGACCAT.............................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................TCCAGTTGCTGTAGTTGGTAGACCATT............................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................TTTTTTCTGCGAACTAAT................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................CCTAAGACTATATTTGCACCT............................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................TGGTAGAGCATTAAAAA........................................................................................................................................................................................ 17 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................TGCTGTAGTTGGTAGACCATTAAAAA........................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................TCCAGTTGCTGTAGTTGGTA.................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................CCAGTTGCTGTAGTTGGTAT................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTTTTTTCTGCGAACTAATCT.............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................TTTCTGCGAACTAATCTTAC........................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................GCAAGATCAACGAGATTGG................................ 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................AAAAAGAGATTTTTTT............................................................................................................................................................................ 16 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................TGGTAGAGCATTAAAA......................................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
....................GATAAGTAGTATTCTCAAGT.................................................................................................................................................................................................................. 20 3 12 0.17 2 0 0 0 0 0 0 0 0 0 2 0 0
.........................................GCTCTAGTCGGTAGAGCATT............................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................AATTTGCTGTAGTTCGTAGAC................................................................................................................................................................................................. 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................TCGGTAGAGCATTAAAAAAAA..................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................GATTGCGCGCCCGAA....................... 15 1 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................ATAAACCTTTTCACCT........ 16 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................GTAGGTGGGAGACTATTAA........................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0
.................GATGATAAGTAGTATTCTC...................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................ATGGCTTATCCTTTGCT............................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

------------------------------------------------------------------------------############################################################################################################################################################################
TCGTGTGGGGCTAAGATCTTCTATTCATCCTAAAAGGTCAACGACATCAACCATCTGGTAATTTTTTCTCTAAAAAAAGACGCTTGATTAGAATGGGCTGTTCATAAAATGATAAATATATGTACCGAATAGGATGCGAATTAGATGAGATCATATGTAGGTATATATGGATTCTGATATAAACGTGGAAACGAATAGTCGATCTAGTTGATCTAACCCGCGGGCTTATTAGGAAAAGTGGACCGGTCGC
*************************************************************..((((((.((.(((((..............(((((...........(((.........)))..........)))))................))))).))..))))))...*****************************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
SRR553486
Makindu_3 day-old ovaries
SRR553488
RT_0-2 hours eggs
M024
male body
M023
head
O001
Testis
SRR553487
NRT_0-2 hours eggs
SRR618934
dsim w501 ovaries
SRR902009
testis
M025
embryo
M053
female body
O002
Head
SRR902008
ovaries
GSM343915
embryo
........GGCTAAGATCTTCTATTCATC............................................................................................................................................................................................................................. 21 0 1 3.00 3 1 0 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................CACGCTTGATTAGAATGGGCT....................................................................................................................................................... 21 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
...................................................................................................................................GGATGCGAATTAGATGAGATC.................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................AAGACGCTTGATTAGAATGGGC........................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................CGAATAGGATGCGAATTAGAT........................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTACCGAATAGGATGCGAATT............................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ATGAGATCATATGTAGGTATA..................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CTAACCCGCGGGCTTATTAGGAAAAGT........... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................CGATCTAGTTGATCTAACCCGCGGGCT........................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GAATAGGATGCGAATTAGATG....................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................ACGACATCAAGCATCT.................................................................................................................................................................................................. 16 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
TCGTGTGGGGCTAAGATCTTCTATTCAT.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................AAGGTCAACGACATCAACCAT.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................ATAGGATGCGAATTAGATGAGATCAT................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................CGACATCAAGCATCTGGT............................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AACGACATCAAGCATCTGGTA.............................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.CGTGTGGGGCTAAGATCTTCT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................ATGGGCTGTTCATAAAATGATA........................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................CGACATCAAGCATCTGGTAG............................................................................................................................................................................................. 20 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................CGGGCTTATTAGGAAAAGTGGACCG..... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................CCGCGGGCTTATTAGGAAAAG............ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................TTAGAATGGGCTGTTCATAAAATGA.......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TATGTACCGAATAGGATGCGAATTAG.......................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................TCAACCATCTGGTAATTTTTT....................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................CAGGATGCGAATTAGATGAGATCATA............................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................ATAGGATGCGAATTAGAT........................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................GGGCTGTTCATAAAATGATAAAT..................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGACGCTTGATTAGAATGGGCTGTTCAT................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................GGGCTGTTCATAAAATGATAA....................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TATGGATTCTGATATAAAC.................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................CGCTTGATTAGAATGGGCTG...................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TACCGAATAGGATGCGAA.............................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................GGCTGTTCATAAAATGATA........................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................TACCGAATAGGATGCGAATTAG.......................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......GGGCTAAGATCTTCTATTCAT.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AAATATATGTACCGAATAGGATGCGA............................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAGGCTTATTAGGAAAAGTGGAC....... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................CCCGCGGGCTTGTTAGGGAAA............. 21 2 2 1.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
...............................................................................................................................................................GGTATATATGGATTCTGATAT...................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACGACATCAACCATCTGGTA.............................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................GCGGGCTTATTAGGAAAAG............ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................AGATCATATGTAGGTATA..................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCCGCGGGCTTATTAGGAAAA............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TAAAAAAAAAGACGCTTGATTA................................................................................................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GAATGGGCTGTTCTT................................................................................................................................................. 15 1 6 0.33 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GCTTCTGATATAAACGTG............................................................... 18 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................AAAATGATGGTTGATTAGAAT............................................................................................................................................................ 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGGGCTGTTCTTAA............................................................................................................................................... 15 1 12 0.17 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................AAAAAAGATGCTGGATT................................................................................................................................................................. 17 2 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TGGGCTGTTCTTAAA.............................................................................................................................................. 15 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TGGGCTGTTCCTAAA.............................................................................................................................................. 15 1 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCGGCGGTCTTATTAGTAA............... 19 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGATCTAGTGGATCA.................................... 15 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATGGCCTGTTCGTAAA.............................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:35 AM