ID:

dsi_21999

 Coordinate:

4:226351-226500 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.1 -9.6 -9.6

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron+

Sense Strand Reads

TTCGTGGAAGTGGTAGTAGCCCAGGAAGTGTTTTGAAGCTTAATGATAATGTAAGTGCTATACTCTGACAATTTTTATAATCTTTACTAGTAGAGTAAAAAGCTATACTAGATTCGGTGAAAATTATGTAAGAGGTAGAAGGAATCTATATAGTCGTGATCAGGATCAATAGCCGAGCCAATATGGCCATCTCCGTCAGATCTGGTCATCTCCATCCGTCCGTATTAACGTAAAGATCTCTTTTTAATTT
*******************************************************************************************************....(((((((((((....((((((((.((...........))))))))))....))).)))))..))).***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
..................................................................................................................................................TATATAGTCGTGATCAGGATCAATAGC............................................................................. 27 0 1 7.00 7 5 2 0 0 0 0 0 0 0
......................................................................................................................................................TAGTCGTGATCAGGATCAATAGCCGA.......................................................................... 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0
...........................................................................................................................................AGGAATCTATATAGTCGTGATCAGGA..................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0
............................................................................................................................TATGTAACAGGTAGAAGGAATATATG.................................................................................................... 26 3 2 1.50 3 0 0 2 0 0 0 1 0 0
.......................................................................................................TATACTAGATTCGGTGAAAATTATGTA........................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................AGGAATCTATATAGTCGTGATCAGGATC................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATCTCCATCCGTCCGTATTAACGTAAAGA.............. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCCGTCAGATCTGGTCATCTCCATCCGTC.............................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................TAGTCGTGATCAGGATCAATAGC............................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................GTAGAAGGAATCTATATAGTCGTGA........................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................TATAGTCGTGATCAGGATCAATAGC............................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATAGTCGTGATCAGGATCAATAGCCGA.......................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TAGAAGGAATCTATATAGTCGTGATC......................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TATATAGTCGTGATCAGGATCAATA............................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................TATACTCTGACAATTTTTATACTCT....................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CATCTCCATCCGTCCGTATA........................ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................TCCATCCGTCCGTATTAACGTAAAGA.............. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................TTCGGTGAAAATTATGTAACAGGTAGA............................................................................................................... 27 1 3 0.67 2 2 0 0 0 0 0 0 0 0
.......................................................TGCTCTACTCTGATATTTTTTA............................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0
...GTGGATGTGGTAGTAGC...................................................................................................................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 0 1 0 0 0
................................................................................................................TTCGGTGAAAATTATGTAACAGGTAGAA.............................................................................................................. 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCAGGATCACTAGCCGAGCCGATATGGCCA............................................................. 30 2 3 0.33 1 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................TGTACAGATCTCTTTTTAA... 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................TAGTGGTGATCAGAATGAAT................................................................................ 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................AGTCGTGATCTGGAT.................................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TGATCAGGATCAATAGC............................................................................. 17 0 20 0.15 3 0 0 0 0 0 3 0 0 0
..........................AGGGTTTTGAAGCTTA................................................................................................................................................................................................................ 16 1 7 0.14 1 0 0 0 0 0 1 0 0 0
.........GTGGTAGTAGCTCAG.................................................................................................................................................................................................................................. 15 1 8 0.13 1 0 0 0 1 0 0 0 0 0
.......................................................................................................TATACTAGATTCGGTGAAAATTATGTAAC...................................................................................................................... 29 1 8 0.13 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................ATTATGGAAGAGGTA................................................................................................................. 15 1 9 0.11 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................GTCAGATCTGGTAATCCAC..................................... 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0
.............................................................................................................AGATTCGGTGAAATT.............................................................................................................................. 15 1 18 0.06 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................GTCGTGATCAGGATCGG................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTGATCAGGATCATTA............................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

AAGCACCTTCACCATCATCGGGTCCTTCACAAAACTTCGAATTACTATTACATTCACGATATGAGACTGTTAAAAATATTAGAAATGATCATCTCATTTTTCGATATGATCTAAGCCACTTTTAATACATTCTCCATCTTCCTTAGATATATCAGCACTAGTCCTAGTTATCGGCTCGGTTATACCGGTAGAGGCAGTCTAGACCAGTAGAGGTAGGCAGGCATAATTGCATTTCTAGAGAAAAATTAAA
*****************************************************************************....(((((((((((....((((((((.((...........))))))))))....))).)))))..))).******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
......................................................................................................................................................................................................................AGGCAGGCATAATTGCATTTCTAGAGA......... 27 0 1 11.00 11 10 1 0 0 0 0 0
.............................................................................................................................................................................................AGAGGCAGTCTAGACCAGTAGAGGT.................................... 25 0 1 3.00 3 3 0 0 0 0 0 0
............................................................ATGAGACTGTTAAAAATATGAGAAAT.................................................................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................GAGGCAGTCTAGACCAGTAGAGGT.................................... 24 0 1 2.00 2 1 0 0 1 0 0 0
......................................................................................................................................................................................................................AGGGAGGCATAATTGC.................... 16 1 6 1.17 7 0 0 7 0 0 0 0
.......................................................................................................................................................................................TCCGGTAGAGACAGTCTAGACT............................................. 22 3 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................AGATATATCAGCACTAGTCCTAGTTAT............................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
..........................................TACTATTACATTCACGATATGAGAC....................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TAGAGGCAGTCTAGACCAGTAGAGGT.................................... 26 0 1 1.00 1 0 0 0 1 0 0 0
................................................................................................................................................AGATATATCAGCACTAGTCCTAGTTA................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
............................................................ATGAGACTGTTAAAAATATGAGAAATGAT................................................................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................TAGATATATCAGCACTAGTCCTAGTTA................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................TAGATATATCAGCACTAGTCCT..................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................CGGTAGAGACAGTCTAGACTATT.......................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAGGCCTAATTACATTTATAG............ 21 3 3 0.67 2 0 0 0 0 2 0 0
...............................................................................................................................................................AGTCCTAGTTATCGGCTCGGT...................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0
................................................................................................................AAGCCACTTTTAATACATTGTCCATCT............................................................................................................... 27 1 3 0.33 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................TCTAGACCAGGAGGAGTAGGC................................ 21 3 6 0.17 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................AGGCAGGCATAATGGC.................... 16 1 6 0.17 1 0 0 1 0 0 0 0
.....................................................................................................................................................................AGTTATCGGCTCAGTTATACCGGT............................................................. 24 1 8 0.13 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................GAGGCAGGCATAATGGC.................... 17 2 15 0.07 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................................GGGGTTGGCAGGGATAATT...................... 19 3 15 0.07 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TAGGGGTAGGCAGGC............................ 15 1 17 0.06 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................AGGGATGCATAATTGC.................... 16 2 19 0.05 1 0 0 1 0 0 0 0
..........................................................................................................................................................TCACTAGTCCTAGTTATCGGCT.......................................................................... 22 1 19 0.05 1 0 0 1 0 0 0 0
................TTCAGGTCCTTCACAAA......................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................GGGATGCATAATTGC.................... 15 2 20 0.05 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................GTAGGGGTAGGCAGG............................. 15 1 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................TTTTCGATATGAGCTAAGTAACTTT................................................................................................................................ 25 3 20 0.05 1 0 0 0 0 0 1 0
.................................................................................................................................................................................................GCAGTCTTGACAAGTA......................................... 16 2 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:226301-226550 + dsi_21999 TTC-GTGGAAGTGGTAGTAGCC---C-AGGAAGTGTTTTGAAGCTTAATGATAATGTAAG-----------------------------------------------T------GCT---ATA------------------------C-TCTG---------------------A-CA------A--TTTTT------ATAATCTTT-ACTAGTA------GAGT----AAAAAGCTATACTAGATTCGGTG-------AAAATTATGTAAGAGGTAGAAGGAATC--------------------TATATAGTCGTGATCAGGATCAA--TAGCCGAGCCAATATGGCCATCTCCGTCAGATCTGGTCATC--TCCATCC--------GTCCGTATTAACGTAA----------------A-GATCTC----------------------------------------------TTTTTAATTT--
droSec2 scaffold_30:38540-38806 + TTC-GTGGAAGTGGTAGTAGCC---C-AGGAAGTGTTTTGAAGCTTAATGATAATGTAAG-----------------------------------------------T------GCT---ATA------------------------C-TCTG---------------------A-CA------A--TTTTT------ATACTCTTT-ACTAGTA------GAGT----AAAAAGCTATACTAGATTCGGTG-------AAAATTATGTAACAGGTAGAAGGAAGCGTC-----------------TATATAGTCGTGATCAGGATCAATATAGCCGAGCCAATATGGCCATCTCCGTCAGATCTGGCCATC--TCCATCC--------GTCCGTATTAACGTAA----------------A-GATCTCTC---TTAAGA-------------------------------TCTCTTTTTAATTT--
dm3 chr4:280181-280365 + TTC-GTGGAAGCGGTAGTACGC---C-AGGAAGTGTTTTGAAGCTTAATGATAATGTAAG-----------------------------------------------T------GCT---ATA------------------------C-TCTG---------------------A-CA------A--TTTTT------ATACTCGGT-GATCGTA------G-GT----AAAAAGCTATACTAGATTCGGTG-------AAAATTATGTAACAGGC----------------------------------------------------------------CAATCTGACCTTT-------------------------TCC--------GTCCGTATGAACGTTA----------------ACGATCTCAGAA----------------------------------------------GCATTT--
droEre2 scaffold_4770:1472676-1472923 - der_511 TGC-C--GCAGAGGTAGAAGCCAATT-TAT---------------A--CGGAAATGTGTT-C--------------ATGGAATGATCATA--------------------------------A------------------------C-GCTT---------------------A-AT------A--TTTTT------ATACCCGCT-ACTTTTA------GAGG----AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAATGGACAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCGA--TGGCCGAGTCGAACTGGCCATGTCCGTCTG-TCCATT----TGA------------------------ACCCCT----------------C-G----------------------------------------TTTGTGTCCCCTC-GT-AGTT--
droYak3 4:722673-722889 - TTC-TAATATCTAGTA---TCT--------------------------------------------------------------------------------------------TTCTAAC-AGAGTCGTTTGATGCTAA-----A-AAT-TG--------TTGGCCTTAT---T-T-----TGCTGTATTT------ATTCCCGTT-ACTCGTA------GAGT----AAAAGGGTATACTAGATTCCTTG-------AAAAGTATGTAACAGGCAGAATA-----------------------------------GCCGAGGACCAA--TAGCCGAGTCGATTTGGCCATGTCCGTCTG-TCTGTT----CGTCTGTCC--------GTCCGTATGAACGTCG----------------A-GATTTC----------------------------------------------------------
droEug1 scf7180000408987:416208-416457 + TTC-GCAGACTTAGCAGGAAGC---T-TCC---AAGGTTG-------------ATGTGTT-----------------TGAAATAT-G--------------------C------TTT---TTA---------------------------T-------------------------CATT---AT--TTATT------ATACCCGTT-ACTAGTA------GAGT----AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGATAGAAGG--TCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAA--TAGCGAAGTCGATTGAGCCATGTCCGTCTG-TCGGTCCATCCGTCCGTCC--------GTCCGTATGAACGCTG----------------A-GACCTC----------------------------------------------------------
droBia1 scf7180000299494:19608-19873 - CGT---GGAACAGCTCGATAAC---TCAAGAAACATATTTAA--TTAATTATTTCTTTAG-----------------------------------------------C------GGT---AT----------------------------------------------------T-T-----TAG--TATTT------ATACCCGTT-ACTCGTA------GAGT----AAAAGCGTATACTAGATTCGTCG-------GAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCC----TGTATTTATATTCTTGATCAGAATAAC--TAGCCGAGTCGATATAGCCATGTCCGTCG--T----------------------------------------------------------A-CATCTCGGAAATAATAAAAGCTACAACAGCCAAACCTGGCATGCAGATTCCTGC-GC-AG----
droTak1 scf7180000413937:1174-1468 - TGT-TCGGAAGTAGAA--------------------------------------TGTAGAAA--------------AAG--TGTCTACATATCAAACGGAATAAAAGTGCACTTGCT---G-ACTG--------------TATTATTATT-TT---------------------GTCAAATAGGA--TTTTT------ATACTCGTT-ACTCGTA------GAGT----AAAAGGGTATATTAGATTCGTGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAACTATATATATTCTTGATCAGGGGCAC--TGGCCGAGTCGATCTAGCCATGTCCGTCTG-TCCGTCTCTCCGTCTGTCC--------GTCTGTATGAACGCTG----------------A-GATCTCAGAAACTACAA-----------------------------------------AAGC--
droEle1 scf7180000490142:14408-14658 + TTC-GTTGAAGGGCTG-TACC---------------------------------------AGCATACCACGAAAAAGTCAAATT-----T----------------TTGGATTTTTTAAAG-AGAG--------------TATTAATAAT-AC---------------------TTTAAA-AGGA--TATTT------ATTTTCGTT-ACCCATA------GAGT----AAAAAGATATATTGTATTCGTTC-------AAAAGTATGTAACAGTTAGAAGGAAGCATTTCCGACCCTATAAAGTAT--ATACTCTTGATCA-----------GCCGAGTTGATCTAGGCATGTCCGTTTG-GCTA------------TTC--------GTCTGTATGAACATTG----------------A-GATCT-----------------------------------------------------------
droRho1 scf7180000768778:8363-8619 + TTC-GAAGATGG-ATGGTGCCC---C-CAAGAATCCACTGGGGCACCATGATGACATGGG-----------------------------------------------T------GC------G------------------------C-GATG---------------------A-CA------A--TTTTT------ATACCCGTT-ACTCGTA------GAGT----AAAAGGGTATATTGTTTTCGTGC-------AAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGGTCAC--TAGCCGAGTCGATATAGCCATGTCCGTCTG-TCCGTCTGTCTGTCTGTCT--------GTCCGTATGAACGCTG----------------A-GATCTC----------------------------------------------------------
droFic1 scf7180000453831:690213-690344 + TCT-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CA------A--TCTTC------ATAATCTTA-ACTCGTA------GTGT----AAAAGGCAATATTGTATTTGTCA-------AAAAGTATATAACTGGTAAAAAA--TC----------------AGTAT-TGTATGTTTGGTCAGGATATT--GAGGCGAGCCGATC---CCATGTCTGTC--------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302275:200919-201145 - TTG-GTGGGCGTTATAGTAACC---G-ACCAGGTGAGTGAAAG----------------------------------------------------------------C------ATT---------------------------------------------------------G-CA----ATC--TTATT------ATACCCT------TG------------------CAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTAAAGGAGACGTATCCGATCCTATAAAGTATATATATTCTTGATCAGCATCAA--CAGCCGAGTCGATCTAGCCATGTCTGTCTG-TCCGTC----CGTCTGTCC--------GTCTGTCCGTCTGTCC----GTTTCTACGCAAA-----------------------------------------------------------------
droAna3 scaffold_12947:1525756-1526009 - GGT-GTGGAAGTTTAAACAAAA---A-AAAAACAACTTTGACTTTTTTTGAGAA---AAG-----------------------------------------------C------GTT---ATA------------------------A-CTTC---------------------ACCA------A--TTTTCATAATTATACCCT------TGCA----------------GAGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAC--CTCCTGAGTCGATATGAGCATGTCCGTCTG-TCCGTC----TGTCTGTTT----------------CTACGCAA----------------A-CTAGTC----------------------------------------------TCTCAGTTTTAA
droBip1 scf7180000391813:6332-6568 + AG------------------------------GTGCCTTATAACTGATTGAT--TGAAAA-----------------------------------------------T------GCC---ATA------------------------A-CTTA---------------------A-GT------G--TTTTT------ATGCCCGGT-ACTCGTA------GAGT----ACAAGGGTATGTTGTAGTCGTGT-------GAA--TATGTAACATAGAGAACGAATCATATCCGACCCCATAAAGTATGTTTATTCTTGATCAGAATCAA--CAGTCAATTCGATATAGCCATGTCCGTCTG-CCC----------------------------GTATGAATTCGT----------------G-GATCTTAGAGATAATAA-------------------------------TCTTTTTTAGATTT--
dp5 XL_group1a:313243-313477 - TTC-GTGGAGGG------------------AAGCTTTTGGA------------------------------------------------------------------------------------------------------------TTCA---------------------A-T------TT--TAATT------ATACCCGAT-ACTCAAA----ATGAGTATTGTATATGGTATATTAGATTTGTTGTGAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGACCAGCATCAA--TAGCCGAGTCGATTGAGCCCTGTCTGTCTG-TCCGTC--------CATCC--------GTCCCTATCAGCGCCTAGTGCTTTCTGT-------GCTTC----------------------------------------------------------
droPer2 scaffold_3449:1990-2241 + TCC-TAGGAAGTGGAAATTTAT---C-GGATAGTAATTT----------------------------------------------------------------------------TTTATT-A----------------------A---T-TTGGCGATAGTCAACTACTAATCGCCA------T--TTTTT------ATACCCGAT-ACTCAAA----ATGAGT----ATTGGGGTTTATTAGATTTGTGGTAAA----AGTGTATATA---------------------------TATAAAGTATATATATTCTTGATCAGCATCAA--TAGCCGAGTCGATTGAGCCATGTCTGTCTG-TCCGTC----TGTCCGTCCGTCCGTCTGTCCGTCTGAGCTAGA----------------G-CAAC--------------------------GATG------------------TTTTGGA-----
droWil2 scf2_1100000004585:3969458-3969705 + GA-------AATGATGATAAAT---T-GATAAATGTT----AGCTGAATGA--ACGTAAAAG--------------ATT--AGTCTGCAT------------------------------------------------------------------------------------A-C-----AGA--TTTTT------ATACCATAC-ACCCATA------GGGT----GAAATGGTATATTAAAGTCGCCA-------AAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCCTGATCAGGATCAA--CAACCGAGTCGATCTAGCCATGTCCGTCTG-TCCGTC----CGTCCGTCC--------GTCCGTATGAACACCT----------------A-GATCTC----------------------------------------------------------
droVir3 scaffold_12958:691388-691617 - TTT-GGGGCAGAAATGGTACCC---T--------GTATTG-----A--AGGGACTGGAAG-G--------------GTGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------ATACCCTGA-ACCCATTAAAAATGTGT----ATAAGGGTATATTGTATTTGTGCTAAATCCAAATGTATGTAACAGGCAGAAGG-----------------------------ATTCTTGATCAGCATTAA--TAGACGAGTCGATCTAGCCATGTCCGTCTG-TCTGTC----CGTCTGTCC--------GTATGTATGAACGCAA----------------G-GATCTC----------------------------------------------------------
droMoj3 scaffold_6680:4658065-4658320 - TTA-GTTAAAGTTTTACTAAAT--------------------------------------------------------------------------------------------TTTTAAT-ACAA---TTTAATGCAAACATAAA--TT-TT---------------------GTTAGTAGATT--TTTTT------ATACCCTGA-ACCCATTGAAAATGGGAA---ATCAGGGTATAATGGTTTTGT-G-------AAAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGGACGAC--GAGCTGAGTCGATATAGCCCTGTCCGTCTG-TCCGTC----CGTCCGTCC--------GTCCGTATGAGCAAAA----------------G-GATCTC----------------------------------------------------------
droGri2 scaffold_15074:3297341-3297604 - TTGCGTGAATGAGGTAGGGGC------GAGTGGCAAATAAAAACTCAAAGGAAATGATGG-----------------------------------------------C------GTT---TGG------------------------T-GATG---------------------A-TA------C--TTTTT------ATACCCTGAAACCCATTCAAATTGGGTA---AAAAGGGTATAATGGTTTTGTGC-------AAATTGATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATATATTCTTGATCAAGGTCAA--TAGCCGAGCCGATATAGCCATGTCCGTCCG-TCCCTC----CGTTTGTTC--------GTCTATATGAACCCGC----------------A-GATCTC----------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTC-GTGGAAGTGGTAGTAGCC---C-AGGAAGTGTTTTGAAGCTTAATGATAATGTAAG-----------------------------------------------T------GCT---ATA------------------------C-TCTG---------------------A-CA------A--TTTTT------ATAATCTTT-ACTAGTA------GAGT----AAAAAGCTATACTAGATTCGGTG-------AAAATTATGTAAGAGGTAGAAGGAATC--------------------TATATAGTCGTGATCAGGATCAA--TAGCCGAGCCAATATGGCCATCTCCGTCAGATCTGGTCATC--TCCATCC--------GTCCGTATTAACGTAA----------------A-GATCTC----------------------------------------------TTTTTAATTT--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................................................................................................................TATATAGTCGTGATCAGGATCAA--TAGC........................................................................................................................................................2717.00700000025000000000
......................................................................................................................................................................................................................................................................................................................TAGTCGTGATCAGGATCAA--TAGCCGA.....................................................................................................................................................2614.00400000004000000000
.......................................................................................................................................................................................................................................................................................AGGAATC--------------------TATATAGTCGTGATCAGGA..................................................................................................................................................................2612.00200000011000000000
............................................................................................................................................................................................................................................TATACTAGATTCGGTG-------AAAATTATGTA.........................................................................................................................................................................................................................2711.00100100000000000000
.......................................................................................................................................................................................................................................................................................AGGAATC--------------------TATATAGTCGTGATCAGGATC................................................................................................................................................................2811.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................ATC--TCCATCC--------GTCCGTATTAACGTAA----------------A-GA..............................................................2911.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................TCCGTCAGATCTGGTCATC--TCCATCC--------GTC...............................................................................................2911.00100000010000000000
......................................................................................................................................................................................................................................................................................................................TAGTCGTGATCAGGATCAA--TAGC........................................................................................................................................................2311.00100000001000000000
..................................................................................................................................................................................................................................................................................GTAGAAGGAATC--------------------TATATAGTCGTGA........................................................................................................................................................................2511.00100000001000000000
....................................................................................................................................................................................................................................................................................................................TATAGTCGTGATCAGGATCAA--TAGC........................................................................................................................................................2511.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................ATAGTCGTGATCAGGATCAA--TAGCCGA.....................................................................................................................................................2711.00100000001000000000
...................................................................................................................................................................................................................................................................................TAGAAGGAATC--------------------TATATAGTCGTGATC......................................................................................................................................................................2611.00100000001000000000
..................................................................................................................................................................................................................................................................................................................TATATAGTCGTGATCAGGATCAA--TA..........................................................................................................................................................2511.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................CATC--TCCATCC--------GTCCGTATA.........................................................................................2011.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................TCCATCC--------GTCCGTATTAACGTAA----------------A-GA..............................................................2611.00100000001000000000
............................................................................................................................................................................................................................................................................................................................TGATCAGGATCAA--TAGC........................................................................................................................................................17200.15300000000003000000
............................................................................................................................................................................................................................................TATACTAGATTCGGTG-------AAAATTATGTAAC.......................................................................................................................................................................................................................2980.13100000001000000000
........................................................................................................................................................................................................................................................................................................................GTCGTGATCAGGATCGG--............................................................................................................................................................17200.05100000001000000000
droSec2
TTC-GTGGAAGTGGTAGTAGCC---C-AGGAAGTGTTTTGAAGCTTAATGATAATGTAAG-----------------------------------------------T------GCT---ATA------------------------C-TCTG---------------------A-CA------A--TTTTT------ATACTCTTT-ACTAGTA------GAGT----AAAAAGCTATACTAGATTCGGTG-------AAAATTATGTAACAGGTAGAAGGAAGCGTC-----------------TATATAGTCGTGATCAGGATCAATATAGCCGAGCCAATATGGCCATCTCCGTCAGATCTGGCCATC--TCCATCC--------GTCCGTATTAACGTAA----------------A-GATCTCTC---TTAAGA-------------------------------TCTCTTTTTAATTT--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TTC-GTGGAAGCGGTAGTACGC---C-AGGAAGTGTTTTGAAGCTTAATGATAATGTAAG-----------------------------------------------T------GCT---ATA------------------------C-TCTG---------------------A-CA------A--TTTTT------ATACTCGGT-GATCGTA------G-GT----AAAAAGCTATACTAGATTCGGTG-------AAAATTATGTAACAGGC----------------------------------------------------------------CAATCTGACCTTT-------------------------TCC--------GTCCGTATGAACGTTA----------------ACGATCTCAGAA----------------------------------------------GCATTT--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................TTCGGTG-------AAAATTATGTAACAGGC----------------------------------------------------------------...................................................................................................................................................2422.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TCGGTG-------AAAATTATGTAACAGGC----------------------------------------------------------------CAATC..............................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................C---C-AGGAAGTGTTTTGAAGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGCGGTAGTACGC---C-AGGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................C-AGGAAGTGTTTTGAAGCTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....GTGGAAGCGGTAGTACGC---C-AGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CGGTG-------AAAATTATGTAACAGGC----------------------------------------------------------------...................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TTCGGTG-------AAAATTATGTAACA......................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TCGGTG-------AAAATTATGTAACAGGC----------------------------------------------------------------...................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TTCGGTG-------AAAATTATGTAAC.......................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TTCGGTG-------AAAATTATGTAACAGG....................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TCC--------GTCCGTATGAACGT....................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGC-C--GCAGAGGTAGAAGCCAATT-TAT---------------A--CGGAAATGTGTT-C--------------ATGGAATGATCATA--------------------------------A------------------------C-GCTT---------------------A-AT------A--TTTTT------ATACCCGCT-ACTTTTA------GAGG----AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAATGGACAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCGA--TGGCCGAGTCGAACTGGCCATGTCCGTCTG-TCCATT----TGA------------------------ACCCCT----------------C-G----------------------------------------TTTGTGTCCCCTC-GT-AGTT--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTC-TAATATCTAGTA---TCT--------------------------------------------------------------------------------------------TTCTAAC-AGAGTCGTTTGATGCTAA-----A-AAT-TG--------TTGGCCTTAT---T-T-----TGCTGTATTT------ATTCCCGTT-ACTCGTA------GAGT----AAAAGGGTATACTAGATTCCTTG-------AAAAGTATGTAACAGGCAGAATA-----------------------------------GCCGAGGACCAA--TAGCCGAGTCGATTTGGCCATGTCCGTCTG-TCTGTT----CGTCTGTCC--------GTCCGTATGAACGTCG----------------A-GATTTC----------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCC--------GTCCGTATGAACGTCG----------------A-................................................................25200.20400000040000
............................................................................................................................................................................................................................................................................................................................................................................................C--------GTCCGTATGAACGTCG----------------A-GATT............................................................22150.07100100000000
.................................................................................................................................................................................................................................................................................................................................................AGTCGATTTGGCCATGTCCGT.................................................................................................................................21200.05101000000000
droEug1
TTC-GCAGACTTAGCAGGAAGC---T-TCC---AAGGTTG-------------ATGTGTT-----------------TGAAATAT-G--------------------C------TTT---TTA---------------------------T-------------------------CATT---AT--TTATT------ATACCCGTT-ACTAGTA------GAGT----AAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGATAGAAGG--TCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAA--TAGCGAAGTCGATTGAGCCATGTCCGTCTG-TCGGTCCATCCGTCCGTCC--------GTCCGTATGAACGCTG----------------A-GACCTC----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGT---GGAACAGCTCGATAAC---TCAAGAAACATATTTAA--TTAATTATTTCTTTAG-----------------------------------------------C------GGT---AT----------------------------------------------------T-T-----TAG--TATTT------ATACCCGTT-ACTCGTA------GAGT----AAAAGCGTATACTAGATTCGTCG-------GAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCC----TGTATTTATATTCTTGATCAGAATAAC--TAGCCGAGTCGATATAGCCATGTCCGTCG--T----------------------------------------------------------A-CATCTCGGAAATAATAAAAGCTACAACAGCCAAACCTGGCATGCAGATTCCTGC-GC-AG----SizeHit CountTotal NormTotal
No Reads
droTak1
TGT-TCGGAAGTAGAA--------------------------------------TGTAGAAA--------------AAG--TGTCTACATATCAAACGGAATAAAAGTGCACTTGCT---G-ACTG--------------TATTATTATT-TT---------------------GTCAAATAGGA--TTTTT------ATACTCGTT-ACTCGTA------GAGT----AAAAGGGTATATTAGATTCGTGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAACTATATATATTCTTGATCAGGGGCAC--TGGCCGAGTCGATCTAGCCATGTCCGTCTG-TCCGTCTCTCCGTCTGTCC--------GTCTGTATGAACGCTG----------------A-GATCTCAGAAACTACAA-----------------------------------------AAGC--SizeHit CountTotal NormTotal
No Reads
droEle1
TTC-GTTGAAGGGCTG-TACC---------------------------------------AGCATACCACGAAAAAGTCAAATT-----T----------------TTGGATTTTTTAAAG-AGAG--------------TATTAATAAT-AC---------------------TTTAAA-AGGA--TATTT------ATTTTCGTT-ACCCATA------GAGT----AAAAAGATATATTGTATTCGTTC-------AAAAGTATGTAACAGTTAGAAGGAAGCATTTCCGACCCTATAAAGTAT--ATACTCTTGATCA-----------GCCGAGTTGATCTAGGCATGTCCGTTTG-GCTA------------TTC--------GTCTGTATGAACATTG----------------A-GATCT-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTC-GAAGATGG-ATGGTGCCC---C-CAAGAATCCACTGGGGCACCATGATGACATGGG-----------------------------------------------T------GC------G------------------------C-GATG---------------------A-CA------A--TTTTT------ATACCCGTT-ACTCGTA------GAGT----AAAAGGGTATATTGTTTTCGTGC-------AAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGGTCAC--TAGCCGAGTCGATATAGCCATGTCCGTCTG-TCCGTCTGTCTGTCTGTCT--------GTCCGTATGAACGCTG----------------A-GATCTC----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCT-C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-CA------A--TCTTC------ATAATCTTA-ACTCGTA------GTGT----AAAAGGCAATATTGTATTTGTCA-------AAAAGTATATAACTGGTAAAAAA--TC----------------AGTAT-TGTATGTTTGGTCAGGATATT--GAGGCGAGCCGATC---CCATGTCTGTC--------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTG-GTGGGCGTTATAGTAACC---G-ACCAGGTGAGTGAAAG----------------------------------------------------------------C------ATT---------------------------------------------------------G-CA----ATC--TTATT------ATACCCT------TG------------------CAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTAAAGGAGACGTATCCGATCCTATAAAGTATATATATTCTTGATCAGCATCAA--CAGCCGAGTCGATCTAGCCATGTCTGTCTG-TCCGTC----CGTCTGTCC--------GTCTGTCCGTCTGTCC----GTTTCTACGCAAA-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GGT-GTGGAAGTTTAAACAAAA---A-AAAAACAACTTTGACTTTTTTTGAGAA---AAG-----------------------------------------------C------GTT---ATA------------------------A-CTTC---------------------ACCA------A--TTTTCATAATTATACCCT------TGCA----------------GAGGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAC--CTCCTGAGTCGATATGAGCATGTCCGTCTG-TCCGTC----TGTCTGTTT----------------CTACGCAA----------------A-CTAGTC----------------------------------------------TCTCAGTTTTAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................TCCGTCTG-TCCGTC----TGTCTG.............................................................................................................20200.153300000
..........................................TTTTTTTGAGAA---AAG-----------------------------------------------C------GTT---ATA------------------------A-CT................................................................................................................................................................................................................................................................................................................................................2580.131010000
.....................................TTGACTTTTTTTGAGAA---A.............................................................................................................................................................................................................................................................................................................................................................................................................................................18100.101000001
.................................................................................................................................................................................................................................................................................................................................AGGATCAC--CTCCTGAGTCGAT...............................................................................................................................................21200.102000020
......................................................................................................................................................................................................................................................................................................................................CAC--CTCCTGAGTCGATATGAGC.........................................................................................................................................22200.102200000
....................................................................................................................................................................................................................................................................AAAGTGTGCAACGCAGTGAAGGAG...........................................................................................................................................................................................................24200.102000002
.......................................................................................................................................................................................................................................................................................................................................................................TG-TCCGTC----TGTCTGTTT----------------CTACG.....................................................................................22200.102200000
...............................................................................................................................................................................................CATAATTATACCCT------TGCA----------------GAG.............................................................................................................................................................................................................................................................21200.102110000
.............................................................................................................................................................................................TTCATAATTATACCCT------TGCA----------------GAGGGT..........................................................................................................................................................................................................................................................26180.061100000
...........................................................................................................................................................................................TTTTCATAATTATACCCT------TGCA----------------GAGG............................................................................................................................................................................................................................................................26190.051100000
................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTG-TCCGTC----TGTCTGTTT----------------..........................................................................................24200.051010000
..................................................................................................................................................................................................................................................AATTTTGGTC-------AAAAGTGTGCAACGCAGT..................................................................................................................................................................................................................28200.051010000
........................................................................................................................................................................................................................................................................TGTGCAACGCAGTGAAGGAGACA........................................................................................................................................................................................................23200.051000010
........................................................................................................................................................................................................................................................GGTC-------AAAAGTGTGCAACGCAGTGA................................................................................................................................................................................................................24200.051010000
.................................................................................................................................................................................................................................................................................................................................................................TCCGTCTG-TCCGTC----TGTCTGTTT----------------CTAC......................................................................................27200.051100000
........................................................................................................................................................................................................................................................................................................................................................................G-TCCGTC----TGTCTGTTT----------------CTACGC....................................................................................22200.051100000
..............................................................................................................................................................................................TCATAATTATACCCT------TGCA----------------G...............................................................................................................................................................................................................................................................20200.051100000
droBip1
AG------------------------------GTGCCTTATAACTGATTGAT--TGAAAA-----------------------------------------------T------GCC---ATA------------------------A-CTTA---------------------A-GT------G--TTTTT------ATGCCCGGT-ACTCGTA------GAGT----ACAAGGGTATGTTGTAGTCGTGT-------GAA--TATGTAACATAGAGAACGAATCATATCCGACCCCATAAAGTATGTTTATTCTTGATCAGAATCAA--CAGTCAATTCGATATAGCCATGTCCGTCTG-CCC----------------------------GTATGAATTCGT----------------G-GATCTTAGAGATAATAA-------------------------------TCTTTTTTAGATTT--SizeHit CountTotal NormTotal
No Reads
dp5
TTC-GTGGAGGG------------------AAGCTTTTGGA------------------------------------------------------------------------------------------------------------TTCA---------------------A-T------TT--TAATT------ATACCCGAT-ACTCAAA----ATGAGTATTGTATATGGTATATTAGATTTGTTGTGAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATATTCTTGACCAGCATCAA--TAGCCGAGTCGATTGAGCCCTGTCTGTCTG-TCCGTC--------CATCC--------GTCCCTATCAGCGCCTAGTGCTTTCTGT-------GCTTC----------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................TTGACCAGCATCAA--TAGCCGAGT...................................................................................................................................................2353.001501300200000
...........................................................................................................................................................................................................................................................................................................................TTGACCAGCATCAA--TAGCCGAGTCG.................................................................................................................................................2551.0050500000000
...........................................................................................................................................................................................................................................................................................................................TTGACCAGCATCAA--TAGCCGAGTC..................................................................................................................................................2450.6030300000000
...........................................................................................................................................................................................................................................................................................................................TTGACCAGCATCAA--TAGCCGAG....................................................................................................................................................2250.6030200001000
...........................................................................................................................................................................................................................................................................................................................TTGACCAGCATCAA--TAGCCGAGTCGA................................................................................................................................................2650.4020200000000
................................................................................................................................................................................................................................................TTAGATTTGTTGTGAAAGTGG..................................................................................................................................................................................................................................2130.3310000000010
.....................................................................................................................................................................................................................................................TTTGTTGTGAAAGTGGATGTG.............................................................................................................................................................................................................................2130.3310100000000
.....................................................................................................................................................................................................................................................TTTGTTGTGAAAGTGGATGTGTG...........................................................................................................................................................................................................................2330.3310100000000
..............................................................................................................................................................................................................................................TATTAGATTTGTTGTGAAAGTG...................................................................................................................................................................................................................................2240.2510000000010
.....................................................................................................................................................................................................................................................................................................................ATATTCTTGACCAGCATCAA--TAG.........................................................................................................................................................2380.2520200000000
...........................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCCC........................................................................................................................................20200.2550500000000
........................................................................................................................................................................................................................................................................................................CCATAAAGTATATATATTCTTGACCA.....................................................................................................................................................................2640.2510100000000
.....................................................................................................................................................................................................................................................................................................................ATATTCTTGACCAGCATCAA--TAGCCG......................................................................................................................................................2650.2010100000000
.....................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCAT...........................................................................................................................................................................................23200.2040000000400
........................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGTCTGTCTG-TCCGTC--------CATC...........................................................................................................2750.2010000000100
..................................................................................................................................................................................................................................................AGATTTGTTGTGAAAGTGT..................................................................................................................................................................................................................................1950.2010000001000
...........................................................................................................................................................................................................................................................................................................................TTGACCAGCATCAA--TAGCCGAGTCGATT..............................................................................................................................................2850.2010100000000
.....................................................................................................................................................................................................................................................................................................................ATATTCTTGACCAGCATCAA--TAGCCGA.....................................................................................................................................................2750.2010100000000
...........................................................................................................................................................................................................................................................................................................................TTGACCAGCATCAA--TAGCCG......................................................................................................................................................2050.2010100000000
............................................................................................................................................................................................................................................................................................................................TGACCAGCATCAA--TAGCCGA.....................................................................................................................................................2060.1710100000000
.....................................................................................................................................................................................................................................................................................................................ATATTCTTGACCAGCATCAA--TAGC........................................................................................................................................................2460.1710100000000
............................................................................................................................................................................................................................................................................................................................TGACCAGCATCAA--TAGCCGAGT...................................................................................................................................................2260.1710100000000
.......................................................................................................................................................................................................................................................................................................................ATTCTTGACCAGCATCAA--TAGC........................................................................................................................................................2260.1710100000000
.....................................................................................................................................................................................................................................................................................................................ATATTCTTGACCAGCATCAA--TAGCC.......................................................................................................................................................2560.1710100000000
......................................................................................................................................................................................................................................................................................................................TATTCTTGACCAGCATCAA--TAG.........................................................................................................................................................2280.1310100000000
......................................................................................................................................................................................................................................................................................................................TATTCTTGACCAGCATCAA--TA..........................................................................................................................................................2180.1310100000000
...........................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGT.......................................................................................................................................................................................................21200.1020000000020
...........................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCCCTG......................................................................................................................................22200.1020000002000
.....................................................................................................................................................................................................................................................................................................................................................GATTGAGCCCTGTCTGTCTG-.............................................................................................................................20200.1020000002000
...................................................................................................................................................................................................................................................................................................................................................TCGATTGAGCCCTGTCTGTCTG-.............................................................................................................................22200.1020000002000
............................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATAA..................................................................................................................................................................................25200.1020000000020
...........................................................................................................................................................................................................................................................GTGAAAGTGGATGTGTGTAAC.......................................................................................................................................................................................................................21200.0510000000010
............................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATTGAGCCCTGTC....................................................................................................................................23200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................CCCTGTCTGTCTG-TCCGTC--------...............................................................................................................19200.0510000100000
..................................................................................................................................................................................................................................................................................................................................................GTCGATTGAGCCCTGTCTGTCTG-.............................................................................................................................23200.0510100000000
...............................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTTCCGACCC..............................................................................................................................................................................................26200.0510100000000
droPer2
TCC-TAGGAAGTGGAAATTTAT---C-GGATAGTAATTT----------------------------------------------------------------------------TTTATT-A----------------------A---T-TTGGCGATAGTCAACTACTAATCGCCA------T--TTTTT------ATACCCGAT-ACTCAAA----ATGAGT----ATTGGGGTTTATTAGATTTGTGGTAAA----AGTGTATATA---------------------------TATAAAGTATATATATTCTTGATCAGCATCAA--TAGCCGAGTCGATTGAGCCATGTCTGTCTG-TCCGTC----TGTCCGTCCGTCCGTCTGTCCGTCTGAGCTAGA----------------G-CAAC--------------------------GATG------------------TTTTGGA-----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................CTG-TCCGTC----TGTCCGTCCGTC.......................................................................................................21200.50100100000
....TAGGAAGTGGAAATTTAT---C-GGATAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.255050000
...................................................................................................................................................................................................................................................................................................................................................................TGTCTG-TCCGTC----TGTCCGTC...........................................................................................................20200.204400000
.....................................................................................................................................................................................................................................................................................................................................................................TCTG-TCCGTC----TGTCCGTCCG.........................................................................................................20200.102020000
.......GAAGTGGAAATTTAT---C-GGATAGTAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
.........................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCCGTCTGTCCGTC...........................................................................................19200.102000002
..........................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAA--TAGCC.......................................................................................................................................................20200.051001000
...................................................................................................................TTTATT-A----------------------A---T-TTGGCGATAGTCAACTAC..............................................................................................................................................................................................................................................................................................................................27200.051010000
.......GAAGTGGAAATTTAT---C-GGATAGTAATTT----------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................28200.051000001
TCC-TAGGAAGTGGAAATTTAT---C-GGATAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051010000
.......GAAGTGGAAATTTAT---C-GGATAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................GTC----TGTCCGTCCGTCCGTCTGT................................................................................................22200.051010000
TCC-TAGGAAGTGGAAATTTAT---C-GGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
..C-TAGGAAGTGGAAATTTAT---C-GGATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
droWil2
GA-------AATGATGATAAAT---T-GATAAATGTT----AGCTGAATGA--ACGTAAAAG--------------ATT--AGTCTGCAT------------------------------------------------------------------------------------A-C-----AGA--TTTTT------ATACCATAC-ACCCATA------GGGT----GAAATGGTATATTAAAGTCGCCA-------AAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCCTGATCAGGATCAA--CAACCGAGTCGATCTAGCCATGTCCGTCTG-TCCGTC----CGTCCGTCC--------GTCCGTATGAACACCT----------------A-GATCTC----------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................AA--CAACCGAGTCGATCTAGCCATGT.....................................................................................................................................25200.30606000
................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTG-TCCGTC----CGTCCG.............................................................................................................21200.15303000
.......................................................................................................................................................................................................................................................................................................................................AA--CAACCGAGTCGATCTAGCCATGTCCG..................................................................................................................................28200.15303000
...........................................................................................................................................................................................................................................................................................................................CTGATCAGGATCAA--CAACCGAG....................................................................................................................................................2280.13101000
.............................................................................................................................................................................................................................................................................................................................................................................GTC----CGTCCGTCC--------GTCCGTATGAACACCG----------------..................................................................28200.10220000
......................................................................................................................................................................................................................................................................................................................................................................................TCCGTCC--------GTCCGTATGAACACCT----------------A-GATC............................................................28200.10202000
...............................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTG-TCCGTC----CGTCCGTC...........................................................................................................24200.10220000
.....................................................................................................................................................................................................................................................................................................................ATATTCCTGATCAGGATC................................................................................................................................................................18150.07110000
..........................................................................................................................................................................................................................................................................................................................................................................TCCGTC----CGTCCGTCC--------GTCCGTA...........................................................................................22200.05110000
.............................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTG-TCCGTC----C..................................................................................................................19200.05101000
................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCATCTCC...................................................................................................................................................................................................20200.05100100
.................................................................................................................................................................................................................................................................................................................................AGGATCAA--CAACCGAGTCGA................................................................................................................................................20200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCC--------GTCCGTATGAACA.....................................................................................21200.05101000
..............................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTG-TCCGTC----CGTCC..............................................................................................................22200.05100010
.................................................................................................................................................................................................................................................TAAAGTCGCCA-------AAATGTATGTAACAGGC...................................................................................................................................................................................................................28200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................CCGTCC--------GTCCGTATGAACACCT----------------A-GATC............................................................27200.05101000
.................................................................................................................................................................................................................................................................................................................................................................TCCGTCTG-TCCGTC----CGTC...............................................................................................................18200.05100010
...............................................................................................................................................................................................................................................ATTAAAGTCGCCA-------AAATGTATGT..........................................................................................................................................................................................................................23200.05100100
droVir3
TTT-GGGGCAGAAATGGTACCC---T--------GTATTG-----A--AGGGACTGGAAG-G--------------GTGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------ATACCCTGA-ACCCATTAAAAATGTGT----ATAAGGGTATATTGTATTTGTGCTAAATCCAAATGTATGTAACAGGCAGAAGG-----------------------------ATTCTTGATCAGCATTAA--TAGACGAGTCGATCTAGCCATGTCCGTCTG-TCTGTC----CGTCTGTCC--------GTATGTATGAACGCAA----------------G-GATCTC----------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........CAGAAATGGTACCC---T--------GTATTG-----A--AGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................252023.5047000000700000000000000000004620000000000000000000000000000000010000
........CAGAAATGGTACCC---T--------GTATTG-----A--AGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................262010.4520900000000000000000000000000020800000000000000000000100000000000000
........CAGAAATGGTACCC---T--------GTATTG-----A--AGGGACT................................................................................................................................................................................................................................................................................................................................................................................................................................................29202.154300000000000000000000000000002601400000000100010000000100000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------ATAC.............................................................................................................................................................................................................................................................................................2661.8311000000000000000000000000221000002040000000000000000000000000000
.........AGAAATGGTACCC---T--------GTATTG-----A--AGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.45290025000000000000000000000000030000000000100000000000000000000000
................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGG-----------------------------AT..............................................................................................................................................................................2861.177001100000000000000000000100100001010010000000000000000000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------ATACCC...........................................................................................................................................................................................................................................................................................2861.006001000000000000000000000120000000002000000000000000000000000000
........CAGAAATGGTACCC---T--------GTATTG-----A--AGGGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.8517000000000000000000000000000500003000090000000000000000000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------AT...............................................................................................................................................................................................................................................................................................2480.756000000000000000000000001111000000001010000000000000000000000000
........CAGAAATGGTACCC---T--------GTATTG-----A--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.6012000000000000000000000000500000000000070000000000000000000000000
........CAGAAATGGTACCC---T--------GTATTG-----A--A......................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.5511003000000000000000000000000080000000000000000000000000000000000
.....................................................................................................................................................................................................................TTAAAAATGTGT----ATAAGGGTATATTG....................................................................................................................................................................................................................................................26130.547000000000000000000000000303000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATTAA--TAGACGAGT...................................................................................................................................................2660.503000000000000000000000000001001000010000000000000000000000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------ATACC............................................................................................................................................................................................................................................................................................2760.503000000000000000000000000210000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTAAAAATGTGT----ATAAGGGTATATT.....................................................................................................................................................................................................................................................25150.335000000001000000000000000020000010001000000000000000000000000000
........CAGAAATGGTACCC---T--------GTATTG-----A--AGGGACA................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.306000000000000000000000000000000000000600000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATTAA--TAGACGAG....................................................................................................................................................2670.292000000000000000000000000000020000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TTAA--TAGACGAGTCGATCTAGCCATG......................................................................................................................................2640.251000000000000000000000000000100000000000000000000000000000000000
.........................................................................................T------------------------------------------------------------------------------------A-CG------C--TTTTT------ATACCCTGA-ACCCAT.................................................................................................................................................................................................................................................................................2580.252000000000000000000000000000000001010000000000000000000000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------ATACCCT..........................................................................................................................................................................................................................................................................................2950.201000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTAAAAATGTGT----ATAAGGGTATAT......................................................................................................................................................................................................................................................24150.203000000000000000000000000110000000000100000000000000000000000000
..........GAAATGGTACCC---T--------GTATTG-----A--AGGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.204000000000000000000000000002200000000000000000000000000000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------ATACCA...........................................................................................................................................................................................................................................................................................2860.171001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTAAAAATGTGT----ATAAGGGTATATTGT...................................................................................................................................................................................................................................................27130.152000000000000000000000000000010001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTG-TCT..........................................................................................................................21200.153000000000000000000000000000030000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTCC--------GTATGTATGAACGCAA----------------G-GA..............................................................24200.153000000000000000000000000000030000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CTAAATCCAAATGTATGTAACAGGCA..................................................................................................................................................................................................................2670.141000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATTAA--TAGACG......................................................................................................................................................2470.141000000000000000000000000000001000000000000000000000000000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------ATA..............................................................................................................................................................................................................................................................................................2570.141000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................CTTGATCAGCATTAA--TAGACG......................................................................................................................................................2170.141000010000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATTAA--TAGACGAG....................................................................................................................................................2570.141000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATTAA--TAGACGAG....................................................................................................................................................2470.141000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TGCTAAATCCAAATGTATGTAACAGG....................................................................................................................................................................................................................2670.141000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................TATTGTATTTGTGCTAAATCCAAAT................................................................................................................................................................................................................................2580.131000000000000000000000000000000010000000000000000000000000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------ATC..............................................................................................................................................................................................................................................................................................2580.131000000000000000000000000000100000000000000000000000000000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTT........................................................................................................................................................................................................................................................................................................21200.102000010000000000000000000000000000000001000000000000000000000000
.................TACCC---T--------GTATTG-----A--AGGGACT................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000000000000000000000000000000000000002000000000000000000000000
.........................T--------GTATTG-----A--AGGGACTGGAAG-G--------------GTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000000000000000020000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ACGAGTCGATCTAGCCATGT.....................................................................................................................................20200.102000000000000000000000000000000000000000200000000000000000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TTTTT------ATT..............................................................................................................................................................................................................................................................................................25100.101000000000000000000000000100000000000000000000000000000000000000
..........GAAATGGTACCC---T--------GTATTG-----A--AGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102002000000000000000000000000000000000000000000000000000000000000
.............................................................................TGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TA..........................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000000000020000000000000000000000000000
...................................TATTG-----A--AGGGACTGGAAG-G--------------GTGAC......................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000000000020000000000000000000000000000000000000000000000000000
....................CC---T--------GTATTG-----A--AGGGACTGGAAG-G--------------GTG........................................................................................................................................................................................................................................................................................................................................................................................................................26200.102002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTAAAAATGTGT----ATAAGGGTATATTGTA..................................................................................................................................................................................................................................................28100.101000000000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TATGTATGAACGCAA----------------G-GATCTC----------------------------------------------------------22200.102000002000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGCCATGTCCGTCT...............................................................................................................................25200.102000020000000000000000000000000000000000000000000000000000000000
.........AGAAATGGTACCC---T--------GTATTG-----A--AGGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102000000000000000000000000000000000000020000000000000000000000000
......................................................................................................................................................................................................................TAAAAATGTGT----ATAAGGGTATATTGTAT.................................................................................................................................................................................................................................................28100.101000000000000000000000000000100000000000000000000000000000000000
.................TACCC---T--------GTATTG-----A--AGGGACTGGAAG-G--------------...........................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000001000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................TGTGT----ATAAGGGTATATTGTATTTGT.............................................................................................................................................................................................................................................26120.081000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGG-----------------------------AT..............................................................................................................................................................................23120.081000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGG-----------------------------AT..............................................................................................................................................................................21130.081000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGG-----------------------------AT..............................................................................................................................................................................22130.081000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................TTAAAAATGTGT----ATAAGGGTATA.......................................................................................................................................................................................................................................................23150.071000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTAAAAATGTGT----ATAAGGGT..........................................................................................................................................................................................................................................................20160.061000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTAAAAATGTGT----ATAAGGGTA.........................................................................................................................................................................................................................................................21160.061000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................TTAAAAATGTGT----ATAAGGG...........................................................................................................................................................................................................................................................19170.061000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................GTGT----ATAAGGGTATATTG....................................................................................................................................................................................................................................................18180.061000000010000000000000000000000000000000000000000000000000000000
.TT-GGGGCAGAAATGGTACCC---T--------GTATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGTCC--------GTATGTATGAACGCAA----------------G-GATCT...........................................................27200.051000000000000000000000000000010000000000000000000000000000000000
...................................................GACTGGAAG-G--------------GTGACAGGCTGGTC------------------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000000000000000000000000000001
........CAGAAATGGTACCC---T--------GTATTG-----A--AGGGATA................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGG-----------------------------................................................................................................................................................................................24200.051000000000000000000000000000000000000010000000000000000000000000
.........................T--------GTATTG-----A--AGGGACTGGAAG-G--------------GTGACA.....................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000010000000000000000000000000000000000000000000000000
........CAGAAATGGTACCC---T--------GTATTG-----A--AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTATGTATGAACGCAA----------------G-GA..............................................................19200.051000000000000000000000000000100000000000000000000000000000000000
....................................ATTG-----A--AGGGACTGGAAG-G--------------GTG........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................................................CCAAATGTATGTAACAGGCAGAAGG-----------------------------................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
.........................T--------GTATTG-----A--AGGGACTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000100000000000000000000000000000000000
....................CC---T--------GTATTG-----A--AGGGACTGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
........CAGAAATGGTACCC---T--------GTATTG-----A--AGGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000001000000000000000000000000000
.....................................TTG-----A--AGGGACTGGAAG-G--------------GTGAC......................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
.........AGAAATGGTACCC---T--------GTATTG-----A--AG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000100000000000000000000000000000000000000
.........AGAAATGGTACCC---T--------GTATTG-----..........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.............ATGGTACCC---T--------GTATTG-----A--AGGGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..................................GTATTG-----A--AGGGACTGGAAG-G--------------GTGAC......................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001000000000000000000000000000000000000000000000000000000000
.....................................................CTGGAAG-G--------------GTGACAGGCTGGTT------------------------------------------------------------------------------------A-.......................................................................................................................................................................................................................................................................................................................23200.051000000000000000000001000000000000000000000000000000000000000000
.........................................................AAG-G--------------GTGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--T...........................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000100000000000000000000000000000000000
.........................................................AAG-G--------------GTGACAGGCTGGTT------------------------------------------------------------------------------------A-CG------C--TT..........................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
...............GGTACCC---T--------GTATTG-----A--AGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000010000000000000000000000000000000000000000000000000000
........CAGAAATGGTACCC---T--------GTATTG-----A--AGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
.................TACCC---T--------GTATTG-----A--AGGGACTGGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000010000000000000000000000000000000
...................................................GACTGGAAG-G--------------GTGACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTA-GTTAAAGTTTTACTAAAT--------------------------------------------------------------------------------------------TTTTAAT-ACAA---TTTAATGCAAACATAAA--TT-TT---------------------GTTAGTAGATT--TTTTT------ATACCCTGA-ACCCATTGAAAATGGGAA---ATCAGGGTATAATGGTTTTGT-G-------AAAAGTATGTAACAGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGGACGAC--GAGCTGAGTCGATATAGCCCTGTCCGTCTG-TCCGTC----CGTCCGTCC--------GTCCGTATGAGCAAAA----------------G-GATCTC----------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................GATT--TTTTT------ATACCCTGA-ACC....................................................................................................................................................................................................................................................................................2160.171000010
.................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGACG................................................................................................................................................................22200.153300000
.............................................................................................................................................................................................................................................................................................................................................................................GTC----CGTCCGTCC--------GTCCGTATGAGCAAAA----------------..................................................................28200.051100000
...............................................................................................................................................................................................................................................................................................................................................TGAGTCGATATAGCCCTGTCCGT.................................................................................................................................23200.051000010
.............................................................................................................................................................................................................................................................................................................................................................CCTGTCCGTCTG-TCCGTC----...................................................................................................................18200.051000010
...........................................................................................................................................................................................................................................................................................................TAAAGTATATATATTCTTGATCAGGACG................................................................................................................................................................28200.051000001
droGri2
TTGCGTGAATGAGGTAGGGGC------GAGTGGCAAATAAAAACTCAAAGGAAATGATGG-----------------------------------------------C------GTT---TGG------------------------T-GATG---------------------A-TA------C--TTTTT------ATACCCTGAAACCCATTCAAATTGGGTA---AAAAGGGTATAATGGTTTTGTGC-------AAATTGATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATATATTCTTGATCAAGGTCAA--TAGCCGAGCCGATATAGCCATGTCCGTCCG-TCCCTC----CGTTTGTTC--------GTCTATATGAACCCGC----------------A-GATCTC----------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................ATAGCCATGTCCGTCCG-TC...........................................................................................................................19130.08110

Generated: 05/18/2015 at 12:32 PM