ID:

dsi_21998

Coordinate:

2r:5605522-5605577 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5605393_5605521_+]; CDS [2r_5605393_5605521_+]; CDS [2r_5605578_5605727_+]; exon [2r_5605578_5605727_+]; intron [2r_5605522_5605577_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------################################################## AATCCCTTGATTAACGAAATTTCCATCCTGCTGCAAGGAAAGCACGCGAGGTAAGTGTTTTCCGTAGAGCCCTATTGAGTCTTTTTCTAAAGAAGTTATTTTACAGTGTTCGCTCCGCCCTGCGTTGGCTGCACGTCCTGACCTCCACCCACACTA ************************************************(((((((.((((..(((((...............)))))..)))).)).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M023 head	O001 Testis
..........................................................................................................TGTTCGCTCCGCCCTGCGTTGGC...........................	23	0	1	1.00	1	0	0	1	0	0
.........................TCCTGCTGCAAGGAAAGCACGCGAG..........................................................................................................	25	0	1	1.00	1	1	0	0	0	0
............................................................................................................................TTGGCTGCACGTCCTGACCT............	20	0	1	1.00	1	0	0	0	1	0
.....................TCCATCCTGCTGCAAGGAAAGCACGCGAG..........................................................................................................	29	0	1	1.00	1	0	1	0	0	0
.....................TCCATCCTGCTGCAAGGAA....................................................................................................................	19	0	1	1.00	1	0	0	0	0	1
...............GAAATTTCGATCCTG..............................................................................................................................	15	1	9	0.11	1	1	0	0	0	0
...............................................................GTAGAGCACTGTTTAGTCT..........................................................................	19	3	16	0.06	1	1	0	0	0	0
......TTGATTAACGAGATT.......................................................................................................................................	15	1	16	0.06	1	0	1	0	0	0
.......TGATTAACGAAATCT......................................................................................................................................	15	1	20	0.05	1	0	0	1	0	0

Anti-sense strand reads

TTAGGGAACTAATTGCTTTAAAGGTAGGACGACGTTCCTTTCGTGCGCTCCATTCACAAAAGGCATCTCGGGATAACTCAGAAAAAGATTTCTTCAATAAAATGTCACAAGCGAGGCGGGACGCAACCGACGTGCAGGACTGGAGGTGGGTGTGAT ************************************************(((((((.((((..(((((...............)))))..)))).)).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	M024 male body
...............................................................................................................................TTACGTGCAGGACTGGAGGTGG.......	22	2	1	2.00	2	2	0	0	0	0	0
...........TTTGCTTTAAAGGTAGGACGACG..........................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0
....................................................................................................AATGTCACAAGCCTGG........................................	16	2	14	0.71	10	0	10	0	0	0	0
.........AAATTGCTTTGAAGGTAGG................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0	0
...........ATTGATCTAGAGGTAGGACG.............................................................................................................................	20	3	3	0.33	1	0	0	0	1	0	0
.............................................................................TCAGAAGAAGATTTCT...............................................................	16	1	14	0.07	1	0	0	0	0	1	0
.......................................................ACAAAGGGCATCTCGTG....................................................................................	17	2	16	0.06	1	0	0	1	0	0	0
.....................................................................................................................................GCAGGACTGGAGGTGCGGA....	19	3	17	0.06	1	0	0	0	0	0	1
..................................................................................................................................CGTGCAGGCCTGGCGATG........	18	3	20	0.05	1	0	0	0	0	1	0

Generated: 04/23/2015 at 06:41 PM