ID:

dsi_21987

 Coordinate:

3l:15753900-15754049 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.0 -14.0

Flybase annnotation

exon [3l_15753811_15753899_-]; CDS [3l_15753811_15753899_-]; intron [3l_15753900_15760177_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GATGACGATTGGGTCATGTGCACCCTGCGGGTGGCCAAAAGATGGCTCATGCTGGAGGGTTTTCAGACTTTGAGCGATGTGGAGAGCTGTCAGGACGAGCTGGGGGAGACTGGTGGCCTGTACCTTTAGGTCTCTCACAATACATTATTGTTAAGCCCATCAGTTGACTTTATGCTAATTGTGGCTTCACTTTATTACAGATGCTATCGGTACAGACGGCCGGCTGCGCGGGAATGGAGCGGCTCGGCGT
**************************************************************..((............(((.((.((((((((................)))))))))).)))))***************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
................................................................................................................................................................................................................GGTACAGACGGCCGGCTGC....................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................ACGGCCGGCTGCGCGGGAATGGAGC.......... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
GATGATGATTGGGTCATG........................................................................................................................................................................................................................................ 18 1 2 1.00 2 0 2 0 0 0 0 0 0 0
.......ATTGGGTCATGTGCACCCTGCGGGT.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................TCAGACTTTGAGCGATGTGGAGAGCTG................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0
....................................................................TTTGAGCGATGTGGAGAGCTGTCAGG............................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
......GATTGGGTCATGTGCACCCTGCGGGTGGC....................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................CAAAAGATGGCTCATGCTGGAGGGATTT........................................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................TGGGGGAGACTGGTGGCCTGTACCT............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................GGGGAGGCTAGTGGCGTGTA................................................................................................................................ 20 3 3 0.33 1 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................ATCGGTTCAGGCGGCCG............................ 17 2 4 0.25 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................ATGGAGCGGTTCGGC.. 15 1 9 0.11 1 0 0 1 0 0 0 0 0 0
...................................................................................................CTGGGGGAGTATGGTCGC..................................................................................................................................... 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0
........................................................................................................................TACCTTTATGGCTCTCTCA............................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0
..............................................TCATGCTGTAGGGTTGCCA......................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 1 0
........................................CATGGCCCATGCTGGA.................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0
.............................................................................................GACGAGGTGGGGGAG.............................................................................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GGGGATGTAGCGGCTC..... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CTACTGCTAACCCAGTACACGTGGGACGCCCACCGGTTTTCTACCGAGTACGACCTCCCAAAAGTCTGAAACTCGCTACACCTCTCGACAGTCCTGCTCGACCCCCTCTGACCACCGGACATGGAAATCCAGAGAGTGTTATGTAATAACAATTCGGGTAGTCAACTGAAATACGATTAACACCGAAGTGAAATAATGTCTACGATAGCCATGTCTGCCGGCCGACGCGCCCTTACCTCGCCGAGCCGCA
*****************************************************************************************************************************..((............(((.((.((((((((................)))))))))).)))))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.................................................................................................................................................................................................TATTGGCTACGATAGC......................................... 16 2 20 0.10 2 2 0
........................................................................................................CCTCTGACCACGGGAGA................................................................................................................................. 17 2 11 0.09 1 0 1

Generated: 04/23/2015 at 08:37 PM