ID:

dsi_21915

 Coordinate:

2l:9657018-9657167 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.3 -8.1 -7.9

Flybase annnotation

exon [2l_9656846_9657017_+]; CDS [2l_9656846_9657017_+]; intron [2l_9657018_9657464_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGAGAATATTGACTGCAAGGGACTGGCGGCTGGACTCATGTCCATAGAGGTAAAAAGAACATGCACCTTTATCCTTCCAACACATTTAGAGATTAGCTATTGACAAAATCAAATAGAAACTCTGAGATTTCATGAACCTCATTTGAAAAGTGAATCAATCATTCGAACCAAAATGAGCTAAACAGTCAACATGTCGAATATTTCTCTGTACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG
***************************************************************************************************************...........................(((((((......(((((.....))))).....))))))).*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 M023
head
 M053
female body
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
...............GCAAGGGACTGGCGGCTGGA....................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGTACTTTAATCGCATTCATG...................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...........GACTGCAAGGGACTGGCGGCTT......................................................................................................................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................ACAAAGACAACTAGAAACTCT.............................................................................................................................. 21 3 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.........TTGACTGCAAGGGACTGGCGGCTG......................................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
..............TGCAAGGGACTGGCGGCTGGT....................................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....GAATATTGACTGCAAGGGACT................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TATTTCTCTGTACTTTAATCG.............................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...AGAATATTGACTGCAAGGGAC.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TGTCGAATATTTCTCTGTACT..................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............ACTGCAAGGGACTGGCGGCTG......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ATGTCGAATATTTCTCTGTACT..................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................AAATAGAAACTCTGAGATTTC...................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....AATATTGACTGCAAGGGACTG................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................ATCATTCGAACCAAAATGAGC....................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............TGCAAGGGACTGGCGGCTGGA....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATCAAATAGAAACTCTGAGATT........................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........TTGACTGCAAGGGACTGGCGGCTGG........................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...AGACTATCGACTGCAAAGGACT................................................................................................................................................................................................................................. 22 3 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0
...........GACTGCAAGGGACTGGCGGCTTT........................................................................................................................................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........GACTGCAAGGGACTGGCGGCT.......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATCAATCATTCGAACCAAAA............................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............ACTGCAAGGGACTGGCGGCTTT........................................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.CGAGAATATTGACTGCAAGGGACT................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................AAGGGACTGGCGGCTGGACTC.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................AGAGGTAAAAAGAACATGCAC....................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................AACGTGAATCAAACACTCGAA.................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0
....CAACATTGTCTGCAAGGGACT................................................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
.....AATATTCACTGCATGGGA................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0
...AGAATTTTGAGCGCAAGGGA................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................CAAAGACAACTAGAAACTCT.............................................................................................................................. 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................ATTAAATGGAAAGTCTGAGA.......................................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGCTCTTATAACTGACGTTCCCTGACCGCCGACCTGAGTACAGGTATCTCCATTTTTCTTGTACGTGGAAATAGGAAGGTTGTGTAAATCTCTAATCGATAACTGTTTTAGTTTATCTTTGAGACTCTAAAGTACTTGGAGTAAACTTTTCACTTAGTTAGTAAGCTTGGTTTTACTCGATTTGTCAGTTGTACAGCTTATAAAGAGACATGAAATTAGCGTAAGTACATGTTATTCGGAATAAGTTGTC
***********************************************************************...........................(((((((......(((((.....))))).....))))))).*************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O001
Testis
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
..............................................................................................................................................................................ACTCGATTTGTCAGTTGTACA....................................................... 21 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TCGATTTGTCAGTTGTAC........................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AAGCTTATAAAGAGACATGAAATT................................. 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................TGTCAGTTGTACAGCTTATAA............................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TAAGTACATGTTATTCGGAAT........ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................CGTAAGTACATGTTATTCGGA.......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................CTTGTACGTGGAAATAGGAA............................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTAGTTAGTAAGCTTGGTTTT............................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGGAGTAAACTTTTCACTTAG............................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................AAGTACATGTTATTCGGAATAAGTTGT. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CGATTTGTCAGTTGTACAG...................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GATTTATCAGTTGTACAGCTT................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................ACGTGGAAATAGGAAGGTTG........................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TAGCGTAAGTACATGTTATTCGGAAT........ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................GTAAGCTTGGTTTTACTCGAT..................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GTACAGCTTATAAAGAGA.......................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGTCAGTTGTACAGCTTATAAA.............................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GTCAGTTGTACAGCTTATAAA.............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................GTACGTGGAAATAGGAAGGTT......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................TGAGTACAGGTATCTCCATTT................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................TAGTTGGACTAAACTTTTGAC................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................TTGTAAACCTCTAATCGAT...................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................AAATAGGCTCGTTGTGTAAAT................................................................................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................GTAAGTCCATGTTAT............... 15 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATACATCAAATTAGCGTCAG......................... 20 3 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................GGAAATTGGAAGGTCGT....................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................ATAGGTAGGTTGTGT..................................................................................................................................................................... 15 1 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................AAAATCTCTAATCGA....................................................................................................................................................... 15 1 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................GGAAATAGGCAGATTG........................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:9656968-9657217 + dsi_21915 TC--GAGAATATTGACTGCAAGGGACTGGCGGCTGGACTCATGTCCATAGAGGTAAAAAG--AACATGCACCTT-------------------------TA------------TC------------------------------------------------------CTTCCAACACATTT-----------------------------------AGAGATTAGCT------ATTGACAAAATCAAATAGAAACTCTGAGATTTCAT---GAACCTCATTTGAA-----------------AAGT---------GAA----TCAATCATTCGAA--------------------CCAAAATGA-------------------------GCTAAACAGTCAACATGT-CG-----------AATATTTCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------
droSec2 scaffold_3:5405770-5406015 + TC--GAGAATATTGACTGCAAGGGACTGGCGGCTGGGCTCATGTCCATCGAGGTAAAAAG--AACATGCACCTT-------------------------TA------------TC------------------------------------------------------CTTCCAACACATTT-----------------------------------AGAGATTAGCT------ATTGACAAAATCAAATAGAAACCCTGAGATATCAT---GAACCTCATTTGAA-----------------AAG-----------------TGAATCAATCGAA--------------------CCAAAATGA-------------------------GCTGAACAGTCAACATGT-CG-----------AATATTTCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------
dm3 chr2L:9959062-9959302 + TC--GAGAATATTGACTGCAAGGGACTGGCGGCTGGACTCATGTCCATAGAGGTAAAAAG--AACATGCACCCT-------------------------TAGCAAATCGGCTTTC------------------------------------------------------TTTCCAACTTATTT-----------------------------------AGAGATTAGCA------ATTGACAAAATCAAATAGAAACCCTG--ATTTCAT---GAACCTCATTTG-------------------------------------------------GAA--------------------CCAAAATAA-------------------------GCTAAGCAGACAACATGT-CG-----------AATATTTCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------
droEre2 scaffold_4929:10579323-10579591 + TC--GAGAATATGGACTGCAAGGGACTGGCGGCTGGACTTATGTCCATAGAGGTAAAAAAAAAACACGCACCCT-------------------------TAGCAGACCCGCTTTC------------------------------------------------------TTTCCAACACATTTGAT--GAAGAAAGTAACCGAAAAGTAAACGGGTTCCA-------------------------TTTTAT------------------------ACATCATTTGAAAAACCCACTAATAGAAAAAG-----------------TGAATCATTCAAA--------------------CCAAAGTAA-------------------------GCTACGCAGTCAACATCT-CG-----------AATATTT-TCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTACTCAACAG------------------------------------------------------
droYak3 2L:12649761-12649949 + TC--GAGAACATAGACTGCAAGGGACTGGCGGCTGGACTTATGTCCATAGAGGTAAAAAG--AACTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGAAAACCCCACTAATGAAAAAA-----------TAA----TCAATTATTCCAA--------------------ACATAATAA-------------------------GCTAACCAGTCAACATTT-CG-----------AATATTTCTCAGT-ACTTTAATCGCATTGATGTACAATAAGCCTTACTCAACAG------------------------------------------------------
droEug1 scf7180000409554:4952939-4953211 - TC--GAGAATGTTGACTGCAAGGGCTTGGCGGCGGGACTTATGTCAATAGAGGTAAACCG--ATTTTTTT---TATATTAAATAAAACAGATTCCTTGGTA------------TT------------------------------------------------------TTTCCAAA-------------AAGG---------AA----AACTTT--TTGATCTGAGCAGTCTATGTTGTAAAAATTTTATACATTTCCTC--ATGTCATTAAGAAAA---------------------------------------TCC----TTAATCAATCAAA--------------------CCAGTTTAA-------------------------GTTAACAAACCAACATAT-TG-----------AATATTTCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATCCAACAG------------------------------------------------------
droBia1 scf7180000301468:61312-61661 + TC--GAGAATGTGGACTGCAAGGGACTGGCGGCAGGACTGATGTCAATAGAGGTAAATGG--AATTTGGT--------CAACTAAAAAAGATGTATAGGGA------------CTCCTGTACTGCTTTTTAAGAATATTATTAGTTTGGTTATAGATAGGTCAGTTCTATTATCACCAGAATTCCTCAGAAGGG----AGTGAAA----AACAGC--TCATTCTGTACAGATT-TGTCGATCAAACTTT----------------ATT-----------------ATAAACCCACTATTTAAAAAAGTGAAAATAGCTAATCCATCAAATAATCCGA--------------------CGAGAATAG-------------------------GCTGGC-AAGAAACGCTT-TG-----------AATATTTCTCGGT-ACTTTAATCGCATTCATGTACAATAAGCCTTAGTTAACAG------------------------------------------------------
droTak1 scf7180000415667:552569-552686 - AT--TAAAAAAGTGAAAACAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG----TCAGTAATTCAGA--------------------CCAGATTCG-------------------------GCTATC-AACCAATACTT-TG-----------GATATTTCACTGC-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------
droEle1 scf7180000491186:3013883-3014009 + TG--GAAATTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----TCAATCAATCAAACCACATTTTTTTTGTGACAATCAGAGTAG-------------------------TCTAAA-AAAAACCATTT-CG-----------AATATTTCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------
droRho1 scf7180000779234:233946-234067 - CACTGAAAATA--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA----TCAACCATTCC----ACATTTAACT-GTGACGACCAGAATAG-------------------------GCTAAA----AACCATTT-TGA----------GTTATTCCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------
droFic1 scf7180000453838:161149-161244 + AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATCAATCAAA--------------------TCAA-ATAG-------------------------GCTGTCAGGCCAACATTT-TG-----------AATATTTCTCTGT-ACTTTAATTGCATTCATGTACAATAAGCCTTATTTAACAG------------------------------------------------------
droKik1 scf7180000302677:164903-165045 - TC--GAGAATGTGGACTGCAAGGGACTGGCAGCAGGACTAATGTCCATAGAGGTAAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--------------------------------------------------TA----ATATATAATA-ATAATAATCA------------------------------------------CATTCTA-TG-----------AATATTTTTCTGT-ACTTTAATTGCATTTCTGTACAATAAGCCTTACTCAACAG------------------------------------------------------
droAna3 scaffold_12916:13798390-13798591 + TT--GAGAACGTTGACTGCAAGGGCCTGGCTGCAGGACTAATGTCGATAGAGGTATAAAT--TT---TAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----TCAATCATTTC----AAATTATCAT-GTT--------AGTATTCTCGACGTACTTTTCACCAGGAATGCCAA--AAACACCTTTTTTCATATATATTTGTATATTTTTTTGTCACTTTAATTATATTCATGTACAAT-AGCCTTATTTAACAG------------------------------------------------------
droBip1 scf7180000396535:762389-762537 + TT--GAGAACGTTGACTGCAAGGGCCTGGCTGCAGGACTAATGTCAATAGAGGTATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCAAA--------------------TCAG-CAAT-------------------------GCTAA--AACCACCATTT-TCATA--TATCTGTATAATT--TTTT-ACTTTAATTATATTCATGTACAAT-AGCCTTATTTAACAG------------------------------------------------------
dp5 4_group3:211103-211250 - TT--GAAAATGTGGACTGCAAGGGCTTGGCCGCGGGACTCATGTCCATAGAGGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTTTC-----------------AAG-------------------------------------------------------------------------------------------------------TG-----------TATATTTTTCTGT-ACTTTAATCATATTCATGTACAAAAAGCCTTATTTAACACAGAATATATAT--------GTGTATATGCA--------TATAG-----------
droPer2 scaffold_1:1685897-1686044 - TT--GAAAATGTGGACTGCAAGGGCTTGGCCGCGGGACTCATGTCCATAGAGGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTTTC-----------------AAG-------------------------------------------------------------------------------------------------------TG-----------TATATTTTTCTGT-ACTTTAATCATATTCATGTACAAAAAGCCTTATTTAACACAGAATATATAT--------GTGTATATGCA--------TATAG-----------
droWil2 scf2_1100000001505:799-851 + TT--GAGAATGTTGATTGCAAGGGTCTAGCTGCTGGACTCATGTCCATTGAGGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12723:3986624-3986677 - TC--GAGAATGTAGACTGCAAGGGCATTGCGGCGGGCCTTATGTCCATTGAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:14740904-14740958 + TT--GAGAATGTAGACTGCAAGGGCATTGCGGCAGGTCTTAGGTCCATTGAGGTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:3671265-3671443 + TC--GAGAATGTAGACTGCAAGGGCATCGCTGCGAGCCTCATGTCCATTGAGGTATAAAA--CTCATTCAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTTA--ATAT-TG-----------TATATTTCTTGCT-ATATTTA-------TATGTGCAATAAGCCTTAGTCAACATAGTATATATATACTTTAATGTGG-----TATAAAAATTCATAGACATATCCCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TC--GAGAATATTGACTGCAAGGGACTGGCGGCTGGACTCATGTCCATAGAGGTAAAAAG--AACATGCACCTT-------------------------TA------------TC------------------------------------------------------CTTCCAACACATTT-----------------------------------AGAGATTAGCT------ATTGACAAAATCAAATAGAAACTCTGAGATTTCAT---GAACCTCATTTGAA-----------------AAGT---------GAA----TCAATCATTCGAA--------------------CCAAAATGA-------------------------GCTAAACAGTCAACATGT-CG-----------AATATTTCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................GCAAGGGACTGGCGGCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000000000002000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-ACTTTAATCGCATTCATG............................................................................2112.00202000000000000000
.............GACTGCAAGGGACTGGCGGCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000000000002000
...........TTGACTGCAAGGGACTGGCGGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000000020000
................TGCAAGGGACTGGCGGCTGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
......GAATATTGACTGCAAGGGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00202000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTCTGT-ACTTTAATCG....................................................................................2111.00110000000000000000
.....AGAATATTGACTGCAAGGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................TGT-CG-----------AATATTTCTCTGT-ACT...........................................................................................2111.00100010000000000000
..............ACTGCAAGGGACTGGCGGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................ATGT-CG-----------AATATTTCTCTGT-ACT...........................................................................................2211.00110000000000000000
.......................................................................................................................................................................................................................................................AAATAGAAACTCTGAGATTTC.......................................................................................................................................................................................................................................................................2111.00101000000000000000
.......AATATTGACTGCAAGGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................ATCATTCGAA--------------------CCAAAATGA-------------------------GC..........................................................................................................................................2111.00100010000000000000
................TGCAAGGGACTGGCGGCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
....................................................................................................................................................................................................................................................ATCAAATAGAAACTCTGAGATT.........................................................................................................................................................................................................................................................................2211.00110000000000000000
...........TTGACTGCAAGGGACTGGCGGCTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
.............GACTGCAAGGGACTGGCGGCTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
.............GACTGCAAGGGACTGGCGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................A----TCAATCATTCGAA--------------------CCAAAA........................................................................................................................................................................2011.00100000100000000000
..............ACTGCAAGGGACTGGCGGCTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
.C--GAGAATATTGACTGCAAGGGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
...................AAGGGACTGGCGGCTGGACTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
................................................AGAGGTAAAAAG--AACATGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
droSec2
TC--GAGAATATTGACTGCAAGGGACTGGCGGCTGGGCTCATGTCCATCGAGGTAAAAAG--AACATGCACCTT-------------------------TA------------TC------------------------------------------------------CTTCCAACACATTT-----------------------------------AGAGATTAGCT------ATTGACAAAATCAAATAGAAACCCTGAGATATCAT---GAACCTCATTTGAA-----------------AAG-----------------TGAATCAATCGAA--------------------CCAAAATGA-------------------------GCTGAACAGTCAACATGT-CG-----------AATATTTCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................GCAAGGGACTGGCGGCTGGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ACTTTAATCGCATTCATGTA..........................................................................2111.0010001
....GAGAATATTGACTGCAAGGGACTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
.............GACTGCAAGGGACTGGCGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.......................GACTGGCGGCTGGGCTCATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
TC--GAGAATATTGACTGCAAGGGACTGGCGGCTGGACTCATGTCCATAGAGGTAAAAAG--AACATGCACCCT-------------------------TAGCAAATCGGCTTTC------------------------------------------------------TTTCCAACTTATTT-----------------------------------AGAGATTAGCA------ATTGACAAAATCAAATAGAAACCCTG--ATTTCAT---GAACCTCATTTG-------------------------------------------------GAA--------------------CCAAAATAA-------------------------GCTAAGCAGACAACATGT-CG-----------AATATTTCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................AATAGAAACCCTG--ATC.........................................................................................................................................................................................................................................................................1624.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTAATCGCATTCATGTAC.........................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................CGGCTGGACTCATGTCCATAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CTGGACTCATGTCCATAGAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GCAAGGGACTGGCGGCTGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GAATATTGACTGCAAGGGACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010
..............ACTGCAAGGGACTGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................A-------------------------GCTAAGCAGACAACATGT-CG-----------............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................GGCTGGACTCATGTCCATAGAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AACTTATTT-----------------------------------AGAGATTAGCA------A.......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATATTGACTGCAAGGGACTGGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...............................GCTGGACTCATGTCCATAGAGGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TTGACTGCAAGGGACTGGCGGCTGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................GGCGGCTGGACTCATGTCCATAGAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TATTGACTGCAAGGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TGACTGCAAGGGACTGGCGGCTATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TCAAATAGAAACCCTG--ATTT........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................ACCCT-------------------------TAGCAAATCGGCTTTT------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................CTGGCGGCTGGACTCATGTCCATAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CTGCAAGGGACTGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........ATATTGACTGCAAGGGACTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCATTCATGTACAATAAGCCTTAT.............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TGGCGGCTGGACTCATGTCCATAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................TGTCCATAGAGGTAAAAAG--AACATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TATTGACTGCAAGGGACTGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACTGGCGGCTGGACTCATGTCCATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ATTGACTGCAAGGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................ATAGAAACCCTG--ATTTCAT---GA................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TATTGACTGCAAGGGACTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
............TGACTGCAAGGGACTGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AA--------------------CCAAAATAA-------------------------GCTAAGCA....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCTCTGT-ACTTTAATCG....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........ATTGACTGCAAGGGACTGGCGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GAATATTGACTGCAAGGGACTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GACTGCAAGGGACTGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACTGGCGGCTGGACTCATGTCCATAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TC--GAGAATATTGACTGCAAGGGACTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................AAGGGACTGGCGGCTGGACTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ACTTTAATCGCATTCATGTA..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................TGGCGGCTGGACTCATGTCCATAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GACTCATGTCCATAGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......AATATTGACTGCAAGGGACTGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......GAATATTGACTGCAAGGGACTGGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGT-ACTTTAATCGCATT................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TGACTGCAAGGGACTGGCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......AATATTGACTGCAAGGGACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TC------------------------------------------------------TTTCCAACTTATTT-----------------------------------AGAG.....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........TTGACTGCAAGGGACTGGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AGAAACCCTG--ATTTCAT---GAACCT............................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CAACATGT-CG-----------AATATTTCTCT.................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TATTGACTGCAAGGGACTGGATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GCTGGACTCATGTCCATAGAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CTCATGTCCATAGAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................ATAGAAACCCTG--ATC.........................................................................................................................................................................................................................................................................1560.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TC--GAGAATATGGACTGCAAGGGACTGGCGGCTGGACTTATGTCCATAGAGGTAAAAAAAAAACACGCACCCT-------------------------TAGCAGACCCGCTTTC------------------------------------------------------TTTCCAACACATTTGAT--GAAGAAAGTAACCGAAAAGTAAACGGGTTCCA-------------------------TTTTAT------------------------ACATCATTTGAAAAACCCACTAATAGAAAAAG-----------------TGAATCATTCAAA--------------------CCAAAGTAA-------------------------GCTACGCAGTCAACATCT-CG-----------AATATTT-TCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTACTCAACAG------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................GCAAGGGACTGGCGGCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.............GACTGCAAGGGACTGGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..........ATGGACTGCAAGGGACTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.............GACTGCAAGGGACTGGCGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.....AGAATATGGACTGCAAGGGACTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.........TATGGACTGCAAGGGACTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
......GAATATGGACTGCAAGGGACTGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000
.....................................CTTATGTCCATAGAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000100
droYak3
TC--GAGAACATAGACTGCAAGGGACTGGCGGCTGGACTTATGTCCATAGAGGTAAAAAG--AACTTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGAAAACCCCACTAATGAAAAAA-----------TAA----TCAATTATTCCAA--------------------ACATAATAA-------------------------GCTAACCAGTCAACATTT-CG-----------AATATTTCTCAGT-ACTTTAATCGCATTGATGTACAATAAGCCTTACTCAACAG------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................TGCAAGGGACTGGCGGCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00202000000000
...............CTGCAAGGGACTGGCGGCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200100010000
.............GACTGCAAGGGACTGGCGGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................GACTTATGTCCATAGAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..................CAAGGGACTGGCGGCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.............GACTGCAAGGGACTGGCGGCTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....................................CTTATGTCCATAGAGGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33100000010000
droEug1
TC--GAGAATGTTGACTGCAAGGGCTTGGCGGCGGGACTTATGTCAATAGAGGTAAACCG--ATTTTTTT---TATATTAAATAAAACAGATTCCTTGGTA------------TT------------------------------------------------------TTTCCAAA-------------AAGG---------AA----AACTTT--TTGATCTGAGCAGTCTATGTTGTAAAAATTTTATACATTTCCTC--ATGTCATTAAGAAAA---------------------------------------TCC----TTAATCAATCAAA--------------------CCAGTTTAA-------------------------GTTAACAAACCAACATAT-TG-----------AATATTTCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATCCAACAG------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TC--GAGAATGTGGACTGCAAGGGACTGGCGGCAGGACTGATGTCAATAGAGGTAAATGG--AATTTGGT--------CAACTAAAAAAGATGTATAGGGA------------CTCCTGTACTGCTTTTTAAGAATATTATTAGTTTGGTTATAGATAGGTCAGTTCTATTATCACCAGAATTCCTCAGAAGGG----AGTGAAA----AACAGC--TCATTCTGTACAGATT-TGTCGATCAAACTTT----------------ATT-----------------ATAAACCCACTATTTAAAAAAGTGAAAATAGCTAATCCATCAAATAATCCGA--------------------CGAGAATAG-------------------------GCTGGC-AAGAAACGCTT-TG-----------AATATTTCTCGGT-ACTTTAATCGCATTCATGTACAATAAGCCTTAGTTAACAG------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AT--TAAAAAAGTGAAAACAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG----TCAGTAATTCAGA--------------------CCAGATTCG-------------------------GCTATC-AACCAATACTT-TG-----------GATATTTCACTGC-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TG--GAAATTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA----TCAATCAATCAAACCACATTTTTTTTGTGACAATCAGAGTAG-------------------------TCTAAA-AAAAACCATTT-CG-----------AATATTTCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CACTGAAAATA--A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA----TCAACCATTCC----ACATTTAACT-GTGACGACCAGAATAG-------------------------GCTAAA----AACCATTT-TGA----------GTTATTCCTCTGT-ACTTTAATCGCATTCATGTACAATAAGCCTTATTCAACAG------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATCAATCAAA--------------------TCAA-ATAG-------------------------GCTGTCAGGCCAACATTT-TG-----------AATATTTCTCTGT-ACTTTAATTGCATTCATGTACAATAAGCCTTATTTAACAG------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TC--GAGAATGTGGACTGCAAGGGACTGGCAGCAGGACTAATGTCCATAGAGGTAAGCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC--------------------------------------------------TA----ATATATAATA-ATAATAATCA------------------------------------------CATTCTA-TG-----------AATATTTTTCTGT-ACTTTAATTGCATTTCTGTACAATAAGCCTTACTCAACAG------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TT--GAGAACGTTGACTGCAAGGGCCTGGCTGCAGGACTAATGTCGATAGAGGTATAAAT--TT---TAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----TCAATCATTTC----AAATTATCAT-GTT--------AGTATTCTCGACGTACTTTTCACCAGGAATGCCAA--AAACACCTTTTTTCATATATATTTGTATATTTTTTTGTCACTTTAATTATATTCATGTACAAT-AGCCTTATTTAACAG------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........ACGTTGACTGCAAGGGCCTGGCTGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000002
..............ACTGCAAGGGCCTGGCTGCAGGACTAAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...............CTGCAAGGGCCTGGCTGCAGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........ACGTTGACTGCAAGGGCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................CTGGCTGCAGGACTAATGTCGATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
................................................................................................................................................................................................................................................................................................................................................................................................CAGGAATGCCAA--AAACACCT.............................................................................................................................2011.001100000
........................CCTGGCTGCAGGACTAATGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
................TGCAAGGGCCTGGCTGCAGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..............ACTGCAAGGGCCTGGCTGCAGGACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..............ACTGCAAGGGCCTGGCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..................................GGACTAATGTCGATAGAGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.....AGAACGTTGACTGCAAGGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...........................GGCTGCAGGACTAATGTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.........CGTTGACTGCAAGGGCCTGGCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...............CTGCAAGGGCCTGGCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..........GTTGACTGCAAGGGCCTGGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...............CTGCAAGGGCCTGGCTGCAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droBip1
TT--GAGAACGTTGACTGCAAGGGCCTGGCTGCAGGACTAATGTCAATAGAGGTATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCAAA--------------------TCAG-CAAT-------------------------GCTAA--AACCACCATTT-TCATA--TATCTGTATAATT--TTTT-ACTTTAATTATATTCATGTACAAT-AGCCTTATTTAACAG------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TT--GAAAATGTGGACTGCAAGGGCTTGGCCGCGGGACTCATGTCCATAGAGGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTTTC-----------------AAG-------------------------------------------------------------------------------------------------------TG-----------TATATTTTTCTGT-ACTTTAATCATATTCATGTACAAAAAGCCTTATTTAACACAGAATATATAT--------GTGTATATGCA--------TATAG-----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........GTGGACTGCAAGGGCTTGGCCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000002
.............GACTGCAAGGGCTTGGCCGCGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..........GTGGACTGCAAGGGCTTGGCCGCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATAT--------GTGTATATGCA--------T...............2011.0010100000000
.....AAAATGTGGACTGCAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAAAGCCTTATTTAACA.......................................................2111.0010100000000
.........................TTGGCCGCGGGACTCATGTCCATAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAACACAGAATATATG............................................1811.0010000100000
droPer2
TT--GAAAATGTGGACTGCAAGGGCTTGGCCGCGGGACTCATGTCCATAGAGGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTTTC-----------------AAG-------------------------------------------------------------------------------------------------------TG-----------TATATTTTTCTGT-ACTTTAATCATATTCATGTACAAAAAGCCTTATTTAACACAGAATATATAT--------GTGTATATGCA--------TATAG-----------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TT--GAGAATGTTGATTGCAAGGGTCTAGCTGCTGGACTCATGTCCATTGAGGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TC--GAGAATGTAGACTGCAAGGGCATTGCGGCGGGCCTTATGTCCATTGAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............CTGCAAGGGCATTGCGGCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
......GAATGTAGACTGCAAGGGCATTGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
......GAATGTAGACTGCAAGGGCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
............AGACTGCAAGGGCATTGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
............AGACTGCAAGGGCATTGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
..........GTAGACTGCAAGGGCATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000010000000000000000000000000000000000
..............ACTGCAAGGGCATTGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
.......................GCATTGCGGCGGGCCTTATGTCCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
droMoj3
TT--GAGAATGTAGACTGCAAGGGCATTGCGGCAGGTCTTAGGTCCATTGAGGTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........GTAGACTGCAAGGGCATTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
..............ACTGCAAGGGCATTGCGGCAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..................................GGTCTTAGGTCCATTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
........................CATTGCGGCAGGTCTTAGGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................GCAAGGGCATTGCGGCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
droGri2
TC--GAGAATGTAGACTGCAAGGGCATCGCTGCGAGCCTCATGTCCATTGAGGTATAAAA--CTCATTCAATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTGTTA--ATAT-TG-----------TATATTTCTTGCT-ATATTTA-------TATGTGCAATAAGCCTTAGTCAACATAGTATATATATACTTTAATGTGG-----TATAAAAATTCATAGACATATCCCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......AATGTAGACTGCAAGGGCATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
........................CATCGCTGCGAGCCTCATGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101
................TGCAAGGGCATCGCTGCGAGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110

Generated: 05/18/2015 at 12:52 PM