ID:

dsi_21883

 Coordinate:

4:974619-974768 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [4_974133_974618_+]; CDS [4_974133_974618_+]; intron [4_974619_975712_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGAAATTGTCCCTTCTAACTCTTGTTACAACGATAAGGCTTTTCTCGAGGTAAGATTTTCTTAAACTTGAATAAATGAAAAGCCCAAACAGACAATTGAAAGTGCGACATCAGCTGATGCATTATATACCGTAATGCGTTTTACAATACTTATGCTTATTTATCTAATTGAAACAGGCGTTATTCAAGTTTTTTTTTAAATAAATTTCAATCGTACCTTATTATAACCGTTACTCGTAGAGTAAAAGGT
**************************************************......((.......((((((((.((((.......(((..(((.((.(((..(((...........((((((((((.....))))))))))..........)))..))).)).)))..))).......))))))))))))........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
.............................AACGATAAGGCTTCT.............................................................................................................................................................................................................. 15 1 4 0.25 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTATAACCGTTACTCGTAGAGTAAA.... 25 0 10 0.20 2 1 0 0 1 0 0 0
................................GATAAGGCTGATCTCGATG....................................................................................................................................................................................................... 19 3 20 0.20 4 0 0 4 0 0 0 0
............................................CTCGAGATAAGATTT............................................................................................................................................................................................... 15 1 11 0.18 2 0 0 0 0 2 0 0
...............................................................................................ATTGAAAGTGGGACTTCA......................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................ACTCGTAGAGTAAAAGG. 17 0 20 0.10 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................TATAACCGTTACTCGTAGAGTAAAAGG. 27 0 10 0.10 1 0 0 0 1 0 0 0
.........................................TTTCTCGAGGTAAAAA................................................................................................................................................................................................. 16 2 20 0.10 2 0 2 0 0 0 0 0
.............................................................................................................................................................................................................................TTATAACCGTTACTCGTAGAG........ 21 0 12 0.08 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................ATTTCACTCGTTCCTTA............................. 17 2 20 0.05 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................TTCCAGTTTTTTTTTA................................................... 16 1 20 0.05 1 0 1 0 0 0 0 0
...........................................................TCTTAAACGTGAATAAAAAAA.......................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................CGTTACTCGTAGAGTA...... 16 0 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

GACTTTAACAGGGAAGATTGAGAACAATGTTGCTATTCCGAAAAGAGCTCCATTCTAAAAGAATTTGAACTTATTTACTTTTCGGGTTTGTCTGTTAACTTTCACGCTGTAGTCGACTACGTAATATATGGCATTACGCAAAATGTTATGAATACGAATAAATAGATTAACTTTGTCCGCAATAAGTTCAAAAAAAAATTTATTTAAAGTTAGCATGGAATAATATTGGCAATGAGCATCTCATTTTCCA
**************************************************......((.......((((((((.((((.......(((..(((.((.(((..(((...........((((((((((.....))))))))))..........)))..))).)).)))..))).......))))))))))))........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
......................AACAATGTTGCTATTCCGAAA............................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................................TTTCGGGTTTGTCTGTTAACT...................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 1
........................................................................................................................................................................................................................GGAATAATATTGGCAATGAGCATCT......... 25 0 1 1.00 1 0 0 0 0 0 1 0
....................................................................................................................................................................................................................GCATGGAATAATATTGGCAATGAGC............. 25 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................AAAATGTTATGAATACGAATAAATAGATT.................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0
................................................................TTGAACTTATTTACTTTTCGGGTTTGTCT............................................................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TAATATTGGCAATGAGCATCTCATTTT... 27 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................AGTCGACTACGTAATATATGGCAT.................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0
.....................GAACAATGTTGCTATTCCGAA................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
..............AGATTGAGAACAATGTTGCTATTCCG.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................AATATATGGCATTACGCAAAATGTT....................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................ATAATATTGGCAATGAGCATCTCATT..... 26 0 1 1.00 1 0 1 0 0 0 0 0
...........GGAAGATTGAGAACAATGTTGCTAT...................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................AGAATTTGAACTTATTTACTTTTCGGGTT.................................................................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................................................CCGCAATAAGTTCAAAAAAAAATT.................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0
.................................................................................TCGGGTTTGTCTGTTATC....................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0
...TTTAACAGGCAAGATT....................................................................................................................................................................................................................................... 16 1 6 0.17 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................GCAATGAGCATCTCATTTT... 19 0 20 0.15 3 0 0 3 0 0 0 0
................................................................................TCCGGGTTTGTCTGTCAA........................................................................................................................................................ 18 2 11 0.09 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................ATATTGGCAATGAGCAT........... 17 0 19 0.05 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................ATGTTGGGAGTGAGCATCTCATTT.... 24 3 20 0.05 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................AAAAAAATTTATTTACTGTT....................................... 20 2 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:974569-974818 + dsi_21883 CTGAAATTGTCC----CTTCTAACTCTTGTT------ACAA--------CGATAAGGCTTTTCT------------CGAGGTAAGATTTT----------CTTAAACTTGA-----ATA-----AATG---------AA--------AAGCCC--------------------------AAACAGACAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGTGCGACATCAGCTGATGCAT----TATATACCGT--------------------------------------------------------AATGCGTTTTACAATACTTATGCTTATT---TATCTAATTGAAAC----AGGCGTTA--TTCAAGTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAATA-AATTT-CAATCGTACCTTATTATAACCGTTACT----CGTAG---AGTAAA-------------------------------------------AG---GT
droSec2 scaffold_40:238338-238493 + CTGAAATTGTCC----CTTCTAACTCTTGTT------ACAA--------CGATAAGGCTTTTCT------------CGAGGTAAGATATT----------CTTAAACTTGA-----ATA-----AATG---------AA--------A------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTATT---TATCTAATTGAAAC----AGGCGTTA--TTCAAGTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAATA-AATTT-CAATCGTACCT-------------------------------------------------------------------TATA-------T---AT
dm3 chr4:1211126-1211352 + CTGAAATTAACC----CTTCAAACTCTTATT------ACAA--------CGATAAGGCACTTCT------------CGAGGTAAGATTTT----------CTTAAACTTCA-----ATG------------------AA--------AAGCCC--------------------------AAA----------------CATTAT----------------------------------------------------------------------------------------------------------------ATTATATATATTAT--------------------------------------------------------------------------------------------------------------------------------------ATGCGTTTTATATGC-GTTTTATGCAT----TATGCTTATT---TATCTACTTGAGAC----AGGCGTTA--TGAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTAAATG-AATTT-CAATCGTACCTTATTATAACCGTTACT----CGTAG---ATTAAA-------------------------------------------AA---GT
droEre2 scaffold_4512:32590-32824 - CTGAAATTATTC----CTTCTTACTCTTGTG------ACAA--------CGATAAGGCGCTTCA------------CGAGGTAAGATTTT----------TGTAAACCTAA-----ATA-----AATT---------AA--------GCG-----------------------------------------------------------------------------------------CTAATAGTCGA--GA-----------------------------------------------------------------------------------ACTCGTCACTCTATTTGTCCCCA---------------------------TGCGAAATGAGCTGATGCCC----TATATACTGT--------------------------------------------------------AATGCGTTTTACAATACTTATGGTCATT---TATCTACTTCACAA----TGGCGATA--TGAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTAACTG-AATTT-CAATCGTACCT------------------------------------------------------------------------------A---AT
droYak3 4:1315871-1316101 + CTGAAATTGATC----CTTCTAACTCTTGTA------ACAA--------CGATAATGCGCTTCA------------CGAGGTAAGATTTT----------CTAAAACTTCA-----ATT-----AATA---------AA--------GTG-----------------------------------------------------------------------------------------CTTAAAGTCGA--GGT----------------------------------------------------------------------------------ACTTGACACTCAATTTGTCCCCATTT-------------------GAAAATGCAACATCAGCTGATACCT----TATATACTGT--------------------------------------------------------AAT-------ACAATACCTCTTCTTATT---AATCTTATTCACAC----TA-CGATAA-CTAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTTTAACTG-AATTT-CAAACGTA---------------------------------------------------------------------------------------
droEug1 scf7180000409533:234824-235081 + AACGT---------------------TTGTA------ATAAAGATGTTT---------------ATTAAGCCTTTTCG------CA----AAC-----TACTTAAACTTAA--------------------------------------TCCC--------------------------AAA----------------CATGAG-----AGCTTGAATGCATTTCGTTTTATTGTTAACTTTT---------------------G-------------------------------------------------------------------------------------TT-----------------------------------TGTTACT----------------------------TCAGCAGTAAGAAGATAATGGTTTTTC---------------------------------------TTTTATTTTTCTTTTTT---TATT----TAAAACATAAAGGA---AAATAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTT--------CGC---------CTTTTTATACCCGTTACT----CGTAG---AGTAAA--AGGGTAT-ACTAGATTCGTTGAAAAGTATGTAACA-------G---AT
droBia1 scf7180000297919:3851-4058 - AGGGTTTTTTTC---------------------------TAA------------------------------------------GACTAT----------TTAA------------GTT-----TAAG---------AT--------AAGCTC--------------------------TTA---------------CT-----CTAACC---------------------------------------------------------------------------------AATTGCAAATCTAGCATACACTTACATTATTCGCTGTGAAAATCTC----------------------------TAC-------------------------------------------------AATT--------------------------------------------------------GAAAATTTCCAGCT----------------------TATTAGA------AGACGTG-----------------------------------------------------------------------------------------------------------GTAGATTTTCGCAATTCTTA-----------------------------TA-----------------------------------------A-AAATT-CGAGGACAAATTATTATACCCGTTACT----TGTAA---AGTAAA--AGGGTAT-AC-------------------------------------T
droTak1 scf7180000410984:1083-1284 + AATTT----TTC----TTTCTATCTCTTGTA------GT--------------------TTT------------TTCA------AA----ACC-----GTCTTATATCTGA-AA--ATA-----AACA---------AG--------TAGGTA--------------------------AGA----------------------------------------------------------------------------------------------CG-------------------------------------------------------------------GCCAATAACTTTTGATTG-------------------GAATGTGCGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAG-----------------------------CCATAATTGCTGAGTT----------TATAGGTCTCGA----------TGA---------ATTTTTATACCCTT---------GT---------AG--AGGGTAT-TATAATTTCAGTCAGATGTTTGCAACGCAGTGAAGGAGAC
droEle1 scf7180000490709:15243-15537 + ATTAC-----CC----CATTTCATTCTTGTT------ACC--------------------TTC------------------TAAAATATT----------CTTAGTTATAT-----ATA-----TTCA---------GA--------AAGCCGAAACTTAAAAACACTTGCAGCTATTGCAA----------------CAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACGCTATGATGATTTTCC---------------------------------------GCT------------------------------------------------------------------GA---GT------------TTTTTGATCATTCCAATGGCAGCCATAAGATATCGTTGTCCGAATTTAGCAAAATTAAAA------------CCGTAGTTCTTA--------AATAAAAACGATTAGTTTGTGTAGAAGT----ATATT----------CAAATCC-ATTTTT--------AGT---------ATTTTTATATCCGTTACA----CGTAG---AGTAAA--AAAGTAG-A--------------CATTATGTAACA-------G---GT
droRho1 scf7180000767661:10352-10604 - AAA---TCGACC----TTTATAATTTTTGAA------ACAA--------CTGTAAGGGTATTTT------------CTATGTTTGC----------------------------------TTCTTGTTTTACTTGGTAATATTTTATGAATTGAAAATTAAAATTGCTTATGCTGAATCAAA----------------CATTAA-----AGC-----------------------------------TGA--AA--------------------------------------------AA----------------------------------------------------------------------------------------------------------------------------------------------AT--------TCATTTAACTGTTTCGAAAGTA-----------------------------------------------A----AGGCA---------------------------------------------------------------------ACAT---------------------------------------------------------------T-------------------------------------ATTATTACTT-----------TGCAACA-AATTG-----------TATTTATACCCGTTACT----CGTAG---AGTAAA--AGGGTAT-ATTGTATTCGTGCAAAAGTATGTAACA-------G---CT
droFic1 scf7180000454040:680430-680523 - TTGTCC----------------------AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA----AAACGTTA--TTAAAGTTTTTGTTCCACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACGGGACT----TGTAG---AGTAAT--ACTGCAT-TT------------ATAGAGTGTAATAAGCTGAAG---AA
droKik1 scf7180000298947:13773-13940 + AAACAGTCAATT---------------------------AAAAATAATT---------------ATA-------------------------------------------------AAA----------------------------------------------------------------TATAAATTAATA---CATTAA--T--AACTTA--------------AAAT-------------------GATTGCCAAAATTGTTGTTGT---TAATCATTATTAACAAACAACAATTTTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AATCATTT--TAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTAA----------------------------------------------------------------TGT-ATTAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGG--AG
droAna3 scaffold_9842:2988-3223 + CCGAAGTTAGCT----TTCCTT--TCTTGTTAAAATTT--------------------TTTT------------TTCA------AA----GTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCTAAAAATATATGGGAACATACAGTAAC---------GAAATAATAAAAGCACCACTACATCACATTTCGATTTTTATTAAAATAAAATGTTATTGGTATTGCTATTTTATG-----------------------------TAGTAATTACAAAACT----------CAAATTCTTGTTTT----------A---------ATATTTATACCCTA---------GC---------AG--AGGGTAT-TATAATTTTGGTCAAAAGTGTGTAACG------------C
droBip1 scf7180000395238:1494-1712 + AGACTTTTGTTAAG----TT-----TCGAT-----------------------------CCT------------TTCG------AT----ATCAGGCCTAAGAAAACTAAA-----AAA----------------------------------------------------------------CAAAAATTCAA----TGTTGG----------------------------------------------------------------------------------------------------------------ATAGTTCAGCTTATGATTTTC------------------------------------------------------------------------------TGGAAT--------------------------------------------------------GAAGATTTCTAAGTTGTATTTAGCTGCT---TATTT-TTTGAAAC----AATAACTT--TGAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GTATT--GTT-AATCT-T----------AATTATACCCTT---------GC---------AG--AGGGTAT-TATAGTTTTGTCCAAAAGTGTGCAACG------------C
dp5 Unknown_group_7:132269-132467 - AAACAAGAATAAAA----C---------------------------------------------------------------------------------------------TGGAA-------------------------------AGCTT--------------------------AAA-GGTCAATCAACCCAAC-----TTT----------------------TTCTGATAGATC---------TG------------G---GGCTT---TAATTTTTTTTACTGAACTATGATTT-------------------------------------------------------------TTTTCATATGGTGGATTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAAAA-TTTTT-AGACTG-TTATTTTTATACTCGATAAT----CATAA---TGAGTA--AGGGTGAAAATG----------GATGTGTGTAACGTCTAGAAG---GT
droPer2 scaffold_79:126314-126506 + AATGTAAAGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--------GCAAGCCACA-----CTTGCAATTTGGATG-------------------------------TC------------A---CG--------------------------------------------------------------------------------------------------------------------------------------CAT----TAAA---------------------------------------------------------------------------------------------------------GAGCATATCG-C-AATTTTATT-------TCTGCGCCGA---G---------------------------------------------------------TTTTATTTAATTGAAATA--ATTAGTCGGCCGATTGGGGATAAAAACC-------------------------------------ATTATCTCCACAAAG--CT----------ATTTGT-------A-TTTATTATACCCGATACT----CAAAA---TGAGTATTGGGGTAT-AT-------------------------------------T
droWil2 scf2_1100000004943:10863970-10864252 + ATGCAATTGCCAAATCCTTCTGTCTCTTTTT------AATA--------AGTG-----AATT--ATTAAGA--------------ATTTT----------CGTTAAAATAGTTGAAA-------------------------------AACTA--------------------------AGA----------------------------------------------------------------------GATTATTGAAACGAGT---TCAAATA-------------------------------------------------------------------GCCATTATTGATAGAACC-----------------------------CAATGGCTGAATCCTGTTTTATTTTCTGAATTGGTATAACTAAGCTAATTGACATTATTTTGATTTAGTTATATACATATAA-----------------------------------------------G----AAGCA---------------------------------------------------------------------GTTT---------------------------------------------------------------T-------------------------------------CTTCTAAATT-----------TTGAATAAAGTTA-----------TGTA-----------------------------------TATAT-ATTAATTTTGGTCAGAAGTGTGCAACGCATGGAAG---GA
droVir3 scaffold_12875:3762182-3762353 - ATTAACTTAAAC---------------------------AGAGAATAAT---------------TTAA------------------------------------------------AGA----------------------------------------------------------------ATT-----------AA-----ATTACAATTTAAATG-------------------------------CA------------A-------------------------------------------------------------------------------------------------------------------------------------TATATTTAT----TATATATTAT--------------------------------------------------------TATTCATTTTTAAATAATAATGTTTATATTTAACA----TAAAGCGCATAGCA-C-AAATAAATA-------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTG-A---------------------------AAAGT----TGC---------------------------AAAATCCAAATTAATGTAACA-------G---GC
droMoj3 scaffold_6498:746985-747211 - CCTGAATCGTTT----TCTC----GCTTTAT------GGCA--------TGATAAAGCTTTTCT-------------GATACGTGT------------------------------TT---------------------------------------------------------------------------------------------------------------TTTTGTTGCGTTCT---------------------GAGC---TTAAATA------------------------------------------------------------ACCGTTG------------------------------------------------GTTAGTCGGTGAAT----TATGTTCTTC--------------------------------------------------------TTC-------GC---------------------------------------------------------------------------------------------------------------------------AATT----------------------------------------CAAG-----------------------------CTTTAATAACAGTTTTAT-------TCAAAA--CT----------ATTTGT---------GTTTTTATACCCTGAGCCCAATTTCAATGGGAAATC--AGGGTAT-AATGGTTTTGTTGAAATGTATGTAACA-------G---GC
droGri2 scaffold_15203:5457017-5457175 + TGATATATAATAAA----TT-----GTTATG------GTAT--------CTACAAGTATACT-------------------------------------ACTCATAGATT--------GCATTTATTTTTAATATTTAT--------TAGTCC--------------------------ATG----------------CATTAA----------------------------------------------------------------------------------------------------------------TTAATTT----AAT--------------ATTCTT-------------TTTTCACACAACTGATCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACT-------------------------TA-----------------------------------AATAT-TCTATTTTTGATCTTAAATAAAA----------AA---CT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTGAAATTGTCC----CTTCTAACTCTTGTT------ACAA--------CGATAAGGCTTTTCT------------CGAGGTAAGATTTT----------CTTAAACTTGA-----ATA-----AATG---------AA--------AAGCCC--------------------------AAACAGACAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAGTGCGACATCAGCTGATGCAT----TATATACCGT--------------------------------------------------------AATGCGTTTTACAATACTTATGCTTATT---TATCTAATTGAAAC----AGGCGTTA--TTCAAGTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAATA-AATTT-CAATCGTACCTTATTATAACCGTTACT----CGTAG---AGTAAA-------------------------------------------AG---GTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAACCGTTACT----CGTAG---AGTAAA-------------------------------------------.......25100.20200000010001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT----CGTAG---AGTAAA-------------------------------------------AG---G.17200.10200000000002000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAACCGTTACT----CGTAG---AGTAAA-------------------------------------------AG---G.27100.10100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAACCGTTACT----CGTAG---AG......................................................21120.08100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTACT----CGTAG---AGTA....................................................16200.05100000000001000000
droSec2
CTGAAATTGTCC----CTTCTAACTCTTGTT------ACAA--------CGATAAGGCTTTTCT------------CGAGGTAAGATATT----------CTTAAACTTGA-----ATA-----AATG---------AA--------A------------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTATT---TATCTAATTGAAAC----AGGCGTTA--TTCAAGTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAATA-AATTT-CAATCGTACCT-------------------------------------------------------------------TATA-------T---ATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT---TATCTAATTGAAAC----AGGC.................................................................................................................................................................................................................................................................................................................2111.0010001
...................CTAACTCTTGTT------ACAA--------CGATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
CTGAAATTAACC----CTTCAAACTCTTATT------ACAA--------CGATAAGGCACTTCT------------CGAGGTAAGATTTT----------CTTAAACTTCA-----ATG------------------AA--------AAGCCC--------------------------AAA----------------CATTAT----------------------------------------------------------------------------------------------------------------ATTATATATATTAT--------------------------------------------------------------------------------------------------------------------------------------ATGCGTTTTATATGC-GTTTTATGCAT----TATGCTTATT---TATCTACTTGAGAC----AGGCGTTA--TGAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTAAATG-AATTT-CAATCGTACCTTATTATAACCGTTACT----CGTAG---ATTAAA-------------------------------------------AA---GTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................A--------CGATAAGGCACTTCT------------CG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTATT---TATCTACTTGAG...........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.TGAAATTAACC----CTTCAAACTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGAC----AGGCGTTA--TGAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-T...............................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTTATT------ACAA--------CGATAAGGCACTTCT------------CG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTACCTTATTATAAGT..........................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTGAAATTATTC----CTTCTTACTCTTGTG------ACAA--------CGATAAGGCGCTTCA------------CGAGGTAAGATTTT----------TGTAAACCTAA-----ATA-----AATT---------AA--------GCG-----------------------------------------------------------------------------------------CTAATAGTCGA--GA-----------------------------------------------------------------------------------ACTCGTCACTCTATTTGTCCCCA---------------------------TGCGAAATGAGCTGATGCCC----TATATACTGT--------------------------------------------------------AATGCGTTTTACAATACTTATGGTCATT---TATCTACTTCACAA----TGGCGATA--TGAACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTAACTG-AATTT-CAATCGTACCT------------------------------------------------------------------------------A---ATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................CGTCACTCTATTTGTCCCCA---------------------------TGCGAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
......................................CAA--------CGATAAGGCGCTTCA------------CGAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
CTGAAATTGATC----CTTCTAACTCTTGTA------ACAA--------CGATAATGCGCTTCA------------CGAGGTAAGATTTT----------CTAAAACTTCA-----ATT-----AATA---------AA--------GTG-----------------------------------------------------------------------------------------CTTAAAGTCGA--GGT----------------------------------------------------------------------------------ACTTGACACTCAATTTGTCCCCATTT-------------------GAAAATGCAACATCAGCTGATACCT----TATATACTGT--------------------------------------------------------AAT-------ACAATACCTCTTCTTATT---AATCTTATTCACAC----TA-CGATAA-CTAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTTTTAACTG-AATTT-CAAACGTA---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AACGT---------------------TTGTA------ATAAAGATGTTT---------------ATTAAGCCTTTTCG------CA----AAC-----TACTTAAACTTAA--------------------------------------TCCC--------------------------AAA----------------CATGAG-----AGCTTGAATGCATTTCGTTTTATTGTTAACTTTT---------------------G-------------------------------------------------------------------------------------TT-----------------------------------TGTTACT----------------------------TCAGCAGTAAGAAGATAATGGTTTTTC---------------------------------------TTTTATTTTTCTTTTTT---TATT----TAAAACATAAAGGA---AAATAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTTTTT--------CGC---------CTTTTTATACCCGTTACT----CGTAG---AGTAAA--AGGGTAT-ACTAGATTCGTTGAAAAGTATGTAACA-------G---ATSizeHit CountTotal NormTotal
No Reads
droBia1
AGGGTTTTTTTC---------------------------TAA------------------------------------------GACTAT----------TTAA------------GTT-----TAAG---------AT--------AAGCTC--------------------------TTA---------------CT-----CTAACC---------------------------------------------------------------------------------AATTGCAAATCTAGCATACACTTACATTATTCGCTGTGAAAATCTC----------------------------TAC-------------------------------------------------AATT--------------------------------------------------------GAAAATTTCCAGCT----------------------TATTAGA------AGACGTG-----------------------------------------------------------------------------------------------------------GTAGATTTTCGCAATTCTTA-----------------------------TA-----------------------------------------A-AAATT-CGAGGACAAATTATTATACCCGTTACT----TGTAA---AGTAAA--AGGGTAT-AC-------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
AATTT----TTC----TTTCTATCTCTTGTA------GT--------------------TTT------------TTCA------AA----ACC-----GTCTTATATCTGA-AA--ATA-----AACA---------AG--------TAGGTA--------------------------AGA----------------------------------------------------------------------------------------------CG-------------------------------------------------------------------GCCAATAACTTTTGATTG-------------------GAATGTGCGATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAG-----------------------------CCATAATTGCTGAGTT----------TATAGGTCTCGA----------TGA---------ATTTTTATACCCTT---------GT---------AG--AGGGTAT-TATAATTTCAGTCAGATGTTTGCAACGCAGTGAAGGAGACSizeHit CountTotal NormTotal
No Reads
droEle1
ATTAC-----CC----CATTTCATTCTTGTT------ACC--------------------TTC------------------TAAAATATT----------CTTAGTTATAT-----ATA-----TTCA---------GA--------AAGCCGAAACTTAAAAACACTTGCAGCTATTGCAA----------------CAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACGCTATGATGATTTTCC---------------------------------------GCT------------------------------------------------------------------GA---GT------------TTTTTGATCATTCCAATGGCAGCCATAAGATATCGTTGTCCGAATTTAGCAAAATTAAAA------------CCGTAGTTCTTA--------AATAAAAACGATTAGTTTGTGTAGAAGT----ATATT----------CAAATCC-ATTTTT--------AGT---------ATTTTTATATCCGTTACA----CGTAG---AGTAAA--AAAGTAG-A--------------CATTATGTAACA-------G---GTSizeHit CountTotal NormTotal
No Reads
droRho1
AAA---TCGACC----TTTATAATTTTTGAA------ACAA--------CTGTAAGGGTATTTT------------CTATGTTTGC----------------------------------TTCTTGTTTTACTTGGTAATATTTTATGAATTGAAAATTAAAATTGCTTATGCTGAATCAAA----------------CATTAA-----AGC-----------------------------------TGA--AA--------------------------------------------AA----------------------------------------------------------------------------------------------------------------------------------------------AT--------TCATTTAACTGTTTCGAAAGTA-----------------------------------------------A----AGGCA---------------------------------------------------------------------ACAT---------------------------------------------------------------T-------------------------------------ATTATTACTT-----------TGCAACA-AATTG-----------TATTTATACCCGTTACT----CGTAG---AGTAAA--AGGGTAT-ATTGTATTCGTGCAAAAGTATGTAACA-------G---CTSizeHit CountTotal NormTotal
No Reads
droFic1
TTGTCC----------------------AAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA----AAACGTTA--TTAAAGTTTTTGTTCCACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACGGGACT----TGTAG---AGTAAT--ACTGCAT-TT------------ATAGAGTGTAATAAGCTGAAG---AASizeHit CountTotal NormTotal
No Reads
droKik1
AAACAGTCAATT---------------------------AAAAATAATT---------------ATA-------------------------------------------------AAA----------------------------------------------------------------TATAAATTAATA---CATTAA--T--AACTTA--------------AAAT-------------------GATTGCCAAAATTGTTGTTGT---TAATCATTATTAACAAACAACAATTTTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----AATCATTT--TAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TTAA----------------------------------------------------------------TGT-ATTAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGG--AGSizeHit CountTotal NormTotal
No Reads
droAna3
CCGAAGTTAGCT----TTCCTT--TCTTGTTAAAATTT--------------------TTTT------------TTCA------AA----GTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCTAAAAATATATGGGAACATACAGTAAC---------GAAATAATAAAAGCACCACTACATCACATTTCGATTTTTATTAAAATAAAATGTTATTGGTATTGCTATTTTATG-----------------------------TAGTAATTACAAAACT----------CAAATTCTTGTTTT----------A---------ATATTTATACCCTA---------GC---------AG--AGGGTAT-TATAATTTTGGTCAAAAGTGTGTAACG------------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTA---------GC---------AG--AGGGTAT-TATAATTT................................22110.182000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-TATAATTTTGGTCAAAAGTGTGT.................26200.153020001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAT-TATAATTTTGGTCAAAAGTGTGT.................28200.102020000
.CGAAGTTAGCT----TTCCTT--TCTTGTTAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TATAATTTTGGTCAAAAGTGTGTAACT------------.28200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGTCAAAAGTGTGTAA...............21200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGGTCAAAAGTGTGT.................21200.051001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTCAAAAGTGTGTA................19200.051001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTCAAAAGTGTGTA................21200.051000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTCAAAAGTGTGTAACG------------C25200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTCAAAAGTGTGTAACG------------.21200.051000010
.CGAAGTTAGCT----TTCCTT--TCTTGTTAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTCAAAAGTGTGTAACG------------C21200.051000010
droBip1
AGACTTTTGTTAAG----TT-----TCGAT-----------------------------CCT------------TTCG------AT----ATCAGGCCTAAGAAAACTAAA-----AAA----------------------------------------------------------------CAAAAATTCAA----TGTTGG----------------------------------------------------------------------------------------------------------------ATAGTTCAGCTTATGATTTTC------------------------------------------------------------------------------TGGAAT--------------------------------------------------------GAAGATTTCTAAGTTGTATTTAGCTGCT---TATTT-TTTGAAAC----AATAACTT--TGAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GTATT--GTT-AATCT-T----------AATTATACCCTT---------GC---------AG--AGGGTAT-TATAGTTTTGTCCAAAAGTGTGCAACG------------CSizeHit CountTotal NormTotal
No Reads
dp5
AAACAAGAATAAAA----C---------------------------------------------------------------------------------------------TGGAA-------------------------------AGCTT--------------------------AAA-GGTCAATCAACCCAAC-----TTT----------------------TTCTGATAGATC---------TG------------G---GGCTT---TAATTTTTTTTACTGAACTATGATTT-------------------------------------------------------------TTTTCATATGGTGGATTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAAAAA-TTTTT-AGACTG-TTATTTTTATACTCGATAAT----CATAA---TGAGTA--AGGGTGAAAATG----------GATGTGTGTAACGTCTAGAAG---GTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCTAGAAG---GT2220.5010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGTCTAGAAG---G.20190.4280500003000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCTAGAAG---G.21190.2140400000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGAAAATG----------GATGTGTGTA................2150.2010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGTCTAGAAG---G.19200.1020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGAAAATG----------GATGTGTT..................19170.0610000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCTAGAAG---..20200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCTAGAA......19200.0510000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------GATGTGTGTAACGTCTAG........19200.0510100000000
droPer2
AATGTAAAGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--------GCAAGCCACA-----CTTGCAATTTGGATG-------------------------------TC------------A---CG--------------------------------------------------------------------------------------------------------------------------------------CAT----TAAA---------------------------------------------------------------------------------------------------------GAGCATATCG-C-AATTTTATT-------TCTGCGCCGA---G---------------------------------------------------------TTTTATTTAATTGAAATA--ATTAGTCGGCCGATTGGGGATAAAAACC-------------------------------------ATTATCTCCACAAAG--CT----------ATTTGT-------A-TTTATTATACCCGATACT----CAAAA---TGAGTATTGGGGTAT-AT-------------------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--ATTAGTCGGCCGATTGGGGAT..............................................................................................................................................................................23201.753502100014
..............................................................................................................................................................................................CAAGCCACA-----CTTGCAATTTGGATG-------------------------------TC------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102020000
..........................................................................................................................................................................................................................................................TC------------A---CG--------------------------------------------------------------------------------------------------------------------------------------CAT----TAAA---------------------------------------------------------------------------------------------------------GAGCATATCG-C-AA............................................................................................................................................................................................................................................................................................................25120.081010000
..........................................................................................................................................................................................................................................................TC------------A---CG--------------------------------------------------------------------------------------------------------------------------------------CAT----TAAA---------------------------------------------------------------------------------------------------------GAGCATATCG-C-A.............................................................................................................................................................................................................................................................................................................24120.081010000
..........................................................................................................................................................................................................................................................TC------------A---CG--------------------------------------------------------------------------------------------------------------------------------------CAT----TAAA---------------------------------------------------------------------------------------------------------GAGCATATCG-C-..............................................................................................................................................................................................................................................................................................................23120.081010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGTCGGCCGATTGGGGA...............................................................................................................................................................................20200.051000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATA--ATTAGTCGGCC........................................................................................................................................................................................18200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--ATTAGTCGGCCGATTGGGGA...............................................................................................................................................................................22200.051001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCCGA---G---------------------------------------------------------TTTTATTTAATTGA.........................................................................................................................................................................................................23200.051000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA--ATTAGTCGGCCGATTGGGGATA.............................................................................................................................................................................26200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCGGCCGATTGGGGATAAAAACC-------------------------------------AT................................................................................................................................28200.051000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATA--ATTAGTCGGCCGATTGGGG................................................................................................................................................................................26200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--ATTAGTCGGCCGATTGGGGATAAAA..........................................................................................................................................................................27200.051000001
...............................................................................................................................................................................................AAGCCACA-----CTTGCAATTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCCGATTGGGGATAAAAACC-------------------------------------AT................................................................................................................................25200.051010000
droWil2
ATGCAATTGCCAAATCCTTCTGTCTCTTTTT------AATA--------AGTG-----AATT--ATTAAGA--------------ATTTT----------CGTTAAAATAGTTGAAA-------------------------------AACTA--------------------------AGA----------------------------------------------------------------------GATTATTGAAACGAGT---TCAAATA-------------------------------------------------------------------GCCATTATTGATAGAACC-----------------------------CAATGGCTGAATCCTGTTTTATTTTCTGAATTGGTATAACTAAGCTAATTGACATTATTTTGATTTAGTTATATACATATAA-----------------------------------------------G----AAGCA---------------------------------------------------------------------GTTT---------------------------------------------------------------T-------------------------------------CTTCTAAATT-----------TTGAATAAAGTTA-----------TGTA-----------------------------------TATAT-ATTAATTTTGGTCAGAAGTGTGCAACGCATGGAAG---GASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................TA-------------------------------------------------------------------GCCATTATTGATAGAACC-----------------------------CAATGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00303000
.TGCAATTGCCAAATCCTTCTGTCTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000
...............................................................................................................................................................................................................................................................................TCAAATA-------------------------------------------------------------------GCCATTATTGATAGAACC-----------------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..............TCCTTCTGTCTCTTTTT------AATA--------AGTG-----AAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATACATATAA-----------------------------------------------G----AAGCA---------------------------------------------------------------------GTTT---------------------------------------------------------------T-------------------------------------C.................................................................................................................................2411.00101000
.................................................................................................................................................................................................................................................................................................................................................................TGATAGAACC-----------------------------CAATGGCTGAATCCTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
........GCCAAATCCTTCTGTCTCTTTTT------AAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
ATGCAATTGCCAAATCCTTCTGTCTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
....................................................................................................................................................................................................................................................................................TA-------------------------------------------------------------------GCCATTATTGATAGAACC-----------------------------CAATGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
.TGCAATTGCCAAATCCTTCTGTCTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
..............................................................................................................................................................................................................................................................................................................................................................TATTGATAGAACC-----------------------------CAATGGCTGAATCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
....................................................................................................................................................................................................................................................................................................................................................................TAGAACC-----------------------------CAATGGCTGAATCCTGTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTTTTATTTTCTGAATTGGTATAAC...................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTCTGAATTGGTATAACTAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
.......................................................................................................................................................TA--------------------------AGA----------------------------------------------------------------------GATTATTGAAACGAGT---TCAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.......................................................................................................................................................................................................................................................................................................................................................................AACC-----------------------------CAATGGCTGAATCCTGTTTTATT....................................................................................................................................................................................................................................................................................................................................................................................................................................2760.17101000
.............................................................T--ATTAAGA--------------ATTTT----------CGTTAAAATAGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.15202000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTCAGAAGTGTGCAACGCATG.........25130.15201010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTCAGAAGTGTGCAACG.............24200.10200200
..................................................................TAAGA--------------ATTTT----------CGTTAAAATAGTTGAAA-------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.08101000
..................................................................TAAGA--------------ATTTT----------CGTTAAAATAGTTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26130.08101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTGCAACGCATGGAAG---G.21190.05100010
........................................................................................TT----------CGTTAAAATAGTTGAAA-------------------------------AACTA--------------------------AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTCAGAAGTGTGCAAC..............21200.05100010
droVir3
ATTAACTTAAAC---------------------------AGAGAATAAT---------------TTAA------------------------------------------------AGA----------------------------------------------------------------ATT-----------AA-----ATTACAATTTAAATG-------------------------------CA------------A-------------------------------------------------------------------------------------------------------------------------------------TATATTTAT----TATATATTAT--------------------------------------------------------TATTCATTTTTAAATAATAATGTTTATATTTAACA----TAAAGCGCATAGCA-C-AAATAAATA-------TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTG-A---------------------------AAAGT----TGC---------------------------AAAATCCAAATTAATGTAACA-------G---GCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
CCTGAATCGTTT----TCTC----GCTTTAT------GGCA--------TGATAAAGCTTTTCT-------------GATACGTGT------------------------------TT---------------------------------------------------------------------------------------------------------------TTTTGTTGCGTTCT---------------------GAGC---TTAAATA------------------------------------------------------------ACCGTTG------------------------------------------------GTTAGTCGGTGAAT----TATGTTCTTC--------------------------------------------------------TTC-------GC---------------------------------------------------------------------------------------------------------------------------AATT----------------------------------------CAAG-----------------------------CTTTAATAACAGTTTTAT-------TCAAAA--CT----------ATTTGT---------GTTTTTATACCCTGAGCCCAATTTCAATGGGAAATC--AGGGTAT-AATGGTTTTGTTGAAATGTATGTAACA-------G---GCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................CGTGT------------------------------TT---------------------------------------------------------------------------------------------------------------TTTTGTTGCGTTCT---------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
....................................................................................................................TT---------------------------------------------------------------------------------------------------------------TTTTGTTGCGTTCT---------------------GAGC---TTAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............................................................T-------------GATACGTGT------------------------------TT---------------------------------------------------------------------------------------------------------------TTTTGTTGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAAATGTATGTAACA-------G---GC22200.255500000
....................................................TAAAGCTTTTCT-------------GATACGTGT------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.111000010
droGri2
TGATATATAATAAA----TT-----GTTATG------GTAT--------CTACAAGTATACT-------------------------------------ACTCATAGATT--------GCATTTATTTTTAATATTTAT--------TAGTCC--------------------------ATG----------------CATTAA----------------------------------------------------------------------------------------------------------------TTAATTT----AAT--------------ATTCTT-------------TTTTCACACAACTGATCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACT-------------------------TA-----------------------------------AATAT-TCTATTTTTGATCTTAAATAAAA----------AA---CTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:34 PM