ID:

dsi_21874

 Coordinate:

3l:7985600-7985749 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.0 -4.5 -4.2

Flybase annnotation

three_prime_UTR [3l_7985545_7986157_+]; exon [3l_7985044_7986157_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
ATTGGGTCTAGCTCTAATTGGTGATGATGGAACGTCTCTAGTCTGCAAATGTAAATATGACCATCGTTAGCACTAATTGTAAGCCCTTAGGACCGCAGAATACCTTTGTCATGGTTCATTTTTTGCGATATATCAGCCTATGCACGGATTAGGGAATAGTGATGTATAAATGCGATCAAATGCAGTGAAACCTAGAAAACTAATTTGAATTTGAAAGAATACAGAAGTTAGGGAGTATGGAAACATCAGA
*****************************************************..((((((....((.........((((...((....))...))))...))....)))))).**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR902009
testis
 GSM343915
embryo
.....................................................AATATGACCATCGTTAGCACT................................................................................................................................................................................ 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0
......................................................ATGTGACCATCGTTGGCACT................................................................................................................................................................................ 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................TTGTAAGCCCTTAGGACCGC.......................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................AATATGACCATCGTTAGCACC................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................CGCAGAATACCTTTGTCATGG........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................................AAATGTAAATATGACCATCGT....................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................GAAAACTAATTTGAATTTGAAAGA................................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................TTAGGGAATAGTGATGTATAAATGCGA........................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAGAAGTTAGGGAGTATGGAAG....... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................ATACAGAAGTTAGGGAGTATG........... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................TAATTGTAAGCCCTTAGGACC............................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..TGGGTCTAGCTCTAATTGGTGATGA............................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................GGCCTATGCACGGATTGGGGAAT............................................................................................. 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................AGCCTATGTACGGATTAGGGA............................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.........................................................TGACCATCGTTAGCACTAATT............................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............TAGTTGGTGATGATGGAACGT....................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAGGGAATAGTGATGTATAAATGCGA........................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................AATTGTAAGCCCTTACGACCG........................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CTATGCACGGATTAGGGAAT............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTTAGGGAGTATGGAAGCATA... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................TATCAGCCTATGCACGGATTAGGGA............................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................TATATCAGCCTATGCACGGATTAGGG................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................ACAGATGTTAGGGAGTATAGAG........ 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1
...............................................AATGTATATTTGAGCATCGTT...................................................................................................................................................................................... 21 3 8 0.50 4 0 0 0 0 0 0 0 4 0 0 0
..................................................................................CCCCTTAGGACTGCAGAA...................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................ACAGAAGGTCGGGAGT.............. 16 2 20 0.20 4 0 0 0 0 0 4 0 0 0 0 0
................................................................................AGGCCCTTCGGACCGCA......................................................................................................................................................... 17 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TGTATTTGGAAGAATACA........................... 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
.................TTGGTGATGATGGCA.......................................................................................................................................................................................................................... 15 1 20 0.15 3 0 2 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................AAACTGACTTGAATATGAAAG................................. 21 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................CCCTTAGGATAGCAGA....................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................GAAGTCGGGGAGTATG........... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................ATTTTTCGCGATATA...................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TAACCCAGATCGAGATTAACCACTACTACCTTGCAGAGATCAGACGTTTACATTTATACTGGTAGCAATCGTGATTAACATTCGGGAATCCTGGCGTCTTATGGAAACAGTACCAAGTAAAAAACGCTATATAGTCGGATACGTGCCTAATCCCTTATCACTACATATTTACGCTAGTTTACGTCACTTTGGATCTTTTGATTAAACTTAAACTTTCTTATGTCTTCAATCCCTCATACCTTTGTAGTCT
****************************************************************************************************************************************..((((((....((.........((((...((....))...))))...))....)))))).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 O002
Head
 SRR902008
ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
............................CCTTGCAGAGATCAGACGTTTACA...................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CTTATGTCTTCAATCCCTCA.............. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................TGGCGTCTTATGGAAACAGTA.......................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................TACCTTGCAGAGATCAGACGT........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................TTGCAGAGATCAGACGTTTAC....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................CGGGAATCCTGGCGTCTTATG................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................CCTGGCGTCTTATGGAAA............................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................CCTTGCAGAGATCAGACGTTT......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................CCGGGAATCCTGGCGTCTTA..................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................CAGGGATCAGACGTCTACATATAT................................................................................................................................................................................................. 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................CGTGATTAACATTCGGGAATC................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TAGTCGGGTACGTGCCTAAT................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................CTATATAGTCGGTTGCGTG......................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGGTCTTCAATGCCTCAT............. 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................AGGTCTTCAATGCCTCA.............. 17 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
.....CAGATCGAGATTGAC...................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................GGTCTTCAATGCCTCA.............. 16 2 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
...............................................................................ATTCGGGAATCCAGGATTC........................................................................................................................................................ 19 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0
................................................................GCAATCGTTATTGACA.......................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:34 AM