ID:

dsi_21873

 Coordinate:

2r:5604210-5604262 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.1 -3.7 -3.4

Flybase annnotation

CDS [2r_5603907_5604209_+]; exon [2r_5603836_5604209_+]; CDS [2r_5604263_5604792_+]; exon [2r_5604263_5604792_+]; intron [2r_5604210_5604262_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------##################################################
TGGGAACGTACAAGGGCTCAGTGGTTATATACTCATTGGCCGAGGGAAAGGTGAGTCGGTCAAAGAACCTTAAAGGCGAATAAACCACTATCAATCCTTGCAGATTTCTCGAACACTCAGTGGTGACAGCCATGATGGACCAGTGACCTCAAT
**************************************************...(((.(((.......(((...))).......))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
.................................................................................................................................CCATGATGGACCAGTGACC..... 19 0 1 1.00 1 0 0 0 0 0 1 0
..................................................................................................GAAAGATTTCTCGAACACTCAGT................................ 23 3 1 1.00 1 0 0 0 0 1 0 0
..................................................GTGAGTCGGTCAAAGAAC..................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................TCGAACACTCAGTGGTGACAGCCATGA.................. 27 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................GACAGCCATGATGGACCAGTGACCTC... 26 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................CAGCCATGATGGACCAGTGACCT.... 23 0 1 1.00 1 0 0 0 1 0 0 0
.........................TATATACTCATTGGCCGAGGGAAAGA...................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................TCTCGAACACTCAGTGGTGACAGCCA..................... 26 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................ATGGACCAGTGACCT.... 15 0 1 1.00 1 0 0 0 0 0 0 1
.......................................................................................................................CTAGTGACAGCCATGAT................. 17 2 9 0.11 1 0 0 1 0 0 0 0
.......................................CCGGGGGAAAGGTGA................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0 0
...........................................................................................................................GGACAGCCATGATGGAAGAG.......... 20 3 10 0.10 1 0 0 0 1 0 0 0
..........................................................................................................................GAGACGGTCATGATGGAC............. 18 3 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

ACCCTTGCATGTTCCCGAGTCACCAATATATGAGTAACCGGCTCCCTTTCCACTCAGCCAGTTTCTTGGAATTTCCGCTTATTTGGTGATAGTTAGGAACGTCTAAAGAGCTTGTGAGTCACCACTGTCGGTACTACCTGGTCACTGGAGTTA
**************************************************...(((.(((.......(((...))).......))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
............TCCCGAGTCACCAATATATGA........................................................................................................................ 21 0 1 2.00 2 2 0 0 0
..............................................................................................................................GTCGGTACTACCTGGTCAC........ 19 0 1 1.00 1 1 0 0 0
......................................................................................................................TCCCCACTGTCAGCACTAC................ 19 3 6 0.17 1 0 0 1 0
............ACCCGAGTCACCAATCT............................................................................................................................ 17 2 10 0.10 1 0 1 0 0
.............CCCGAGTCACCAATC............................................................................................................................. 15 1 10 0.10 1 0 1 0 0
.......................................................................................AATAGTTAGGAACGT................................................... 15 1 15 0.07 1 0 0 0 1

Generated: 04/23/2015 at 06:35 PM