ID:

dsi_21775

 Coordinate:

2r:4805526-4805675 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_4805676_4806115_+]; five_prime_UTR [2r_4805676_4805810_+]; intron [2r_4802684_4805675_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATTTATGTTAAAAAGCAGAATCTTCGGATATATATCACATTAATCCCAAACCATGAAAATAAACCACCCACACAAACTGAAGCAACGAATACATTTTATTTTGGAAGATTTATGCCGCCAAACACTTTGATAATGTGGCAACTTGTTTATTTACCACTCTGCACTGGCGATTCGGTAAACTAATCGTGGATATTTTCAGCGATAGGTAGCCGGAAATCCTTTCAGACGTCATCGATGCGAGTGCCGGAC
**************************************************....((((((((..((((.....((((.(((((...........))))).)))).........((((((((((...)))).....))))))....(((..((((((....(((....)))....))))))..))).)))).)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...................................................................................................................................TAATGTGGCAACTTTTTTATC.................................................................................................. 21 2 1 1.00 1 0 0 1 0 0
..........................................................................................................................................................................................................ATAGGTAGCCGGAAATCCTTTCAGA....................... 25 0 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................................................................................................TCATCGATGCGAGAGCCGA.. 19 2 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................GACGTCATCGCTGCGA......... 16 1 5 0.20 1 0 0 0 1 0
.....................................................................CACACAAAGTGAAGCGAC................................................................................................................................................................... 18 2 12 0.17 2 0 2 0 0 0
.....................................................................................................................................................................................................................CAAATCCTTTCAGACTTC................... 18 2 8 0.13 1 0 0 0 0 1
...................................................................................................................................................................ACTGGCGATTCGGGA........................................................................ 15 1 11 0.09 1 0 1 0 0 0
.................................................................................................................................................................................................................GCCAGAAATCCTTGCAGA....................... 18 2 11 0.09 1 0 0 0 1 0
....................................................................................................................................TATGTGGTAACTTGTTTATGT................................................................................................. 21 3 11 0.09 1 1 0 0 0 0
.......................................................................................................................................................TTACCACTCTGGACT.................................................................................... 15 1 13 0.08 1 1 0 0 0 0
....................................................................................................................................................................................................................GTAAATCCTTTCAGA....................... 15 1 16 0.06 1 1 0 0 0 0
...................................................................................................TTGTAGAAGAATTATGCCG.................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 1
......................................................................................................................................................................................................CGCGATCGGTAGCCGGA................................... 17 2 20 0.05 1 0 0 0 0 1
.................................................................................................................................................................GAACTGGCGATTCGGGA........................................................................ 17 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TTAAATACAATTTTTCGTCTTAGAAGCCTATATATAGTGTAATTAGGGTTTGGTACTTTTATTTGGTGGGTGTGTTTGACTTCGTTGCTTATGTAAAATAAAACCTTCTAAATACGGCGGTTTGTGAAACTATTACACCGTTGAACAAATAAATGGTGAGACGTGACCGCTAAGCCATTTGATTAGCACCTATAAAAGTCGCTATCCATCGGCCTTTAGGAAAGTCTGCAGTAGCTACGCTCACGGCCTG
**************************************************....((((((((..((((.....((((.(((((...........))))).)))).........((((((((((...)))).....))))))....(((..((((((....(((....)))....))))))..))).)))).)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M023
head
 SRR1275487
Male larvae
.....................................................................................................................................................................................................................................AGTAGCTACGCTCTCGG.... 17 1 2 16.00 32 22 4 6 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGTAGCTACGCTCTCG..... 16 1 3 10.00 30 19 3 3 5 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGTAGCTACGCTCTCGGC... 18 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................AAGTAGCTACGCTCTCGGC... 19 2 2 4.50 9 5 4 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAGTCGTTATCCATCGGC..................................... 18 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTAGCTACGCTCTCGG.... 16 1 3 2.67 8 5 1 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GAAGTAGCTACGCTCTCGGC... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................GAAGTAGCTACGCTCTCGGCT.. 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................GTAGCTACGCTCTCGGC... 17 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGTAGCTACGCTCTCGGCT.. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GAAGTAGCTACGCTCTCGG.... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................ACATCGTTGTTCATGTAAAATAAA.................................................................................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTAGCTACGCTCTCG..... 15 1 7 0.43 3 0 0 1 2 0 0 0 0 0 0
.................................................................................TCGTTGTTCATGTAAAATAAAAA.................................................................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AAACGGCCTTTAGGAAAGTAT....................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................TTAGCACCTTTAAAAGT................................................... 17 1 6 0.33 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GAAGTAGCTACGCTC........ 15 1 13 0.31 4 0 2 0 0 0 0 0 1 0 1
.......................................................................................................................................................................................................................................TAGCTACGCTCTCGG.... 15 1 11 0.27 3 1 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................TAGCACCTTTAAAAGT................................................... 16 1 9 0.22 2 0 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTAGCTACGCTCTCGGCT.. 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
...........................................................TATTTGGACGGTGTGCTTGA........................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................ACCGGTCTTTAGGAACGTCTG...................... 21 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AGTAGCTACGCTCTCGGCTC. 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................GGCCTTTAGGAACGTCTGGT.................... 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................ACGGCGGTTTGTGAAGAT....................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................AGTAGCTACGTTCTCGG.... 17 2 19 0.11 2 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTAAGAAGTAGCTACGCTC........ 19 3 20 0.10 2 0 0 0 0 0 0 0 0 2 0
..................................................................................................................................................................................................................................TGCAGTAGCTAGGCT......... 15 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0
............................................................ATTTGGTGGCTGTGT............................................................................................................................................................................... 15 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................CCTATAGAAGTCGCT............................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................GCGGTTTGTGAAGCCACTA................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................ACGGCGGTTTGTGAAGA........................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Generated: 04/23/2015 at 05:12 AM