ID:

dsi_21771

 Coordinate:

x:6566091-6566240 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTAATCTCTCTCACCTAGGCTAGTTAAATCAGGGCTCTACCAAATCGAAGGGATAGTTATATATTAAGTTATATTAAGTTTTTTTTTTCTAATTGTTCTTAGAGACGCATGATACCTTAAAATACTATTGAAACATTATACTAATAAATTTTGTTTTTTTTTTAACCTTTTCTTTACCTTCGCACCTTTTATCAATCTAGGCGAAAACTTTGCCGATTTGCTTGACGGATTGTACCGTAGGAAGTACCAT
**************************************************......................................(((((((.....((((..((..........(((........((((((..((........))..))))))..........)))...........))..))))...)))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
....................................................................................................................................................................................................................................ATTGTACCGTAGGAAGTAC... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAAACTTTGCCGATTTGCTTGACGGATT................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................AACTTTGCCGATTTGCTTGACGGAT.................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................GAAAACTTTGCCGATTTGCTTGACGG...................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GCTTGACGGATTGTACC.............. 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................GATTTGCTTGACGGATTGTACCGT............ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................TAAATCAGGGCTCTACCAAATC............................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................TAGCGAAAACTTTGCCGATT................................ 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0
...........................................ATCGAAGGGATATTTAT.............................................................................................................................................................................................. 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................GTCCCGTTGGAAGTACCA. 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................TGTCCCGTCGGAGGTACCA. 19 3 9 0.44 4 0 0 0 0 0 0 1 3 0
.......................................................................................................................................................................................................................................GTCCCGTCGGAGGTACCA. 18 3 20 0.25 5 0 0 0 0 0 0 5 0 0
............................................................................................................................................................................................TTATCACTCTGGGCGAAAA........................................... 19 2 9 0.11 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................TTATCACTCTGGGCGAAA............................................ 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AATTAGAGAGAGTGGATCCGATCAATTTAGTCCCGAGATGGTTTAGCTTCCCTATCAATATATAATTCAATATAATTCAAAAAAAAAAGATTAACAAGAATCTCTGCGTACTATGGAATTTTATGATAACTTTGTAATATGATTATTTAAAACAAAAAAAAAATTGGAAAAGAAATGGAAGCGTGGAAAATAGTTAGATCCGCTTTTGAAACGGCTAAACGAACTGCCTAACATGGCATCCTTCATGGTA
**************************************************......................................(((((((.....((((..((..........(((........((((((..((........))..))))))..........)))...........))..))))...)))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
.....................TCAAGTTAGTCACGAGATGG................................................................................................................................................................................................................. 20 2 1 2.00 2 2 0 0 0 0 0 0 0
..................GGATCAAGTTAGTCGCGAGAT................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................................................AATCTCTGCGTCCCACGGAAT................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0
.....................TCAAGTTAGTCACGAGATG.................................................................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0
.....................TCAAGTTAGTCACGAGAT................................................................................................................................................................................................................... 18 2 5 1.00 5 2 0 0 3 0 0 0 0
......AGAGGGTGGATCCGA..................................................................................................................................................................................................................................... 15 1 3 1.00 3 0 3 0 0 0 0 0 0
......................CAAGTTAGTCACGAGATG.................................................................................................................................................................................................................. 18 2 1 1.00 1 1 0 0 0 0 0 0 0
......................CAATTTAGTCACGAGAT................................................................................................................................................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0
......AGAGGGTGGATCCGAGC................................................................................................................................................................................................................................... 17 2 2 1.00 2 0 2 0 0 0 0 0 0
.............................GTCCCGAGATGGTTGA............................................................................................................................................................................................................. 16 1 1 1.00 1 0 0 1 0 0 0 0 0
...................GATCAAGTTAGTCACGAGATGG................................................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.........................TTAGGTCCCGAGATGGTT............................................................................................................................................................................................................... 18 2 3 0.67 2 2 0 0 0 0 0 0 0
..............................TCCCGAGATGGTTGA............................................................................................................................................................................................................. 15 1 5 0.60 3 0 1 2 0 0 0 0 0
...................GATCAAGTTAGTCACGAGA.................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
..........................TAGGTCCCGAGATGGTT............................................................................................................................................................................................................... 17 2 8 0.38 3 3 0 0 0 0 0 0 0
...............................CCCGAGATGGTATAG............................................................................................................................................................................................................ 15 1 3 0.33 1 0 0 1 0 0 0 0 0
......................CAAGTTAGTCACGAGATGGA................................................................................................................................................................................................................ 20 3 3 0.33 1 1 0 0 0 0 0 0 0
.....................TCAAGTTAGTCACGAGA.................................................................................................................................................................................................................... 17 2 19 0.26 5 4 0 0 1 0 0 0 0
.....................TCAATTTAGTCACGAG..................................................................................................................................................................................................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................................................TAAAATGATTGTTTAAAAGAAAAA............................................................................................ 24 3 5 0.20 1 0 0 0 1 0 0 0 0
........................................................................................................................................................AAAAAAAAAAATTGGATTAGAAAT.......................................................................... 24 3 6 0.17 1 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................AAACGGCTCAAGGAATTGCC...................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0
............................GGTCCCGAGATGGTTGA............................................................................................................................................................................................................. 17 2 20 0.15 3 0 1 1 0 0 0 1 0
.........................TTAGGTCCCGAGATGGTTG.............................................................................................................................................................................................................. 19 3 20 0.15 3 0 0 3 0 0 0 0 0
.............................GTCCCGAGATGGTTGAC............................................................................................................................................................................................................ 17 2 14 0.14 2 0 0 2 0 0 0 0 0
......................CAAGTTAGTCACGAGAT................................................................................................................................................................................................................... 17 2 15 0.13 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................TGGAAGCTTGGACAATA.......................................................... 17 2 8 0.13 1 0 0 0 1 0 0 0 0
...................GATCAATTTAGTCAC........................................................................................................................................................................................................................ 15 1 9 0.11 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GAAACGGCTCAAGGAATTGC....................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0
......AGAGGGTGGATCCGAG.................................................................................................................................................................................................................................... 16 2 19 0.11 2 0 2 0 0 0 0 0 0
............................GGTCCCGAGATGGTTG.............................................................................................................................................................................................................. 16 2 20 0.10 2 0 0 0 0 0 0 2 0
.....................................................................................................TGCTGCGTACTATGGCA.................................................................................................................................... 17 3 20 0.10 2 0 1 0 0 0 0 1 0
..............................TCCCGAGATGGTTAA............................................................................................................................................................................................................. 15 1 10 0.10 1 0 0 1 0 0 0 0 0
........................AGTTAGTCACGAGATG.................................................................................................................................................................................................................. 16 2 20 0.10 2 0 0 0 2 0 0 0 0
..........................TCAGTTCCGAGATGGTTGA............................................................................................................................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 2 0 0
...................................AGATGGTTTGGCTTC........................................................................................................................................................................................................ 15 1 11 0.09 1 0 0 0 0 0 0 1 0
...............................CCCGAGATTGATTAGCATC........................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 0 0 1 0 0
.........................TTAGGTCCCGAGATGGTTGA............................................................................................................................................................................................................. 20 3 13 0.08 1 0 0 1 0 0 0 0 0
............................................................................................................................................................AAAAAAATTGCAAAAGACAT.......................................................................... 20 2 14 0.07 1 1 0 0 0 0 0 0 0
...................GATCAAGTTAGTCACGA...................................................................................................................................................................................................................... 17 2 18 0.06 1 1 0 0 0 0 0 0 0
.............................ATCCCGAGATGGTTGA............................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0
........................GTTCAGTCACGAGATGGTT............................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0
..........................TAGGTCCCGAGATGGTTGA............................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0
...........................AGGTCCCGAGATGGTT............................................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................AAAAAAAAAGAGGACAAGAAAT.......................................................................... 22 3 20 0.05 1 0 0 1 0 0 0 0 0
..........................TCAGTCGCGAGATGGTTGA............................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0
......AGAGAGTGGATCAGTT.................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0
..........................TCAGTCACGAGATGGTTG.............................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:6566041-6566290 - dsi_21771 TTAATCTCTC-------TCACCT--AGGCTA--GTTAAAT---CAGGGCTC-------------TACCAAATCGAA------------------GG-------GA-TAGT-------------------------------------TA-------TATATTAAGTTA-------------------------------------------------------------------------------------TATTAAGTT---------TTTTT--TTTCTA------------AT---------------TGT-----------------------TCTTAGAGA-----CGCATGAT-----ACCTTAAA-ATA-C--T-ATTG-----AAA-------CA-----------------------------------------------------------------------------TT-ATACTAATAAATT----------------TTG-TTT---TTTTTTTAACCTTTT-----CT-TTA--CCT-------------------TCGCAC-C----TTTTATCAA---TCTAGGCGAAAACTTTGCCGATTTGCTTGACGGATTGTACCGTAGGAAGTACCAT
droSec2 scaffold_24:193470-193726 - TTAATCTCTC-------TCACCT--AGGCTA--GTTAAAT---CAGGGCTC-------------TACCCAAACGAA------------------GG-------GA-TAGT-------------------------------------TA-------TATATTAAGTTATATTAA-------------------------------------------------------------------------------GTTTAAGTT---------TTTT---TTTCTA------------AT---------------TGT-----------------------TCTTAGAGA-----CGCATGAT-----ACCTTAAA-ATA-C--T-ATTG-----AAA-------CA-----------------------------------------------------------------------------TT-ATACTAATAAATT----------------TTG-TTTTT-TTTTTTAAACCTTTT-----CT-TTA--CCT-------------------TCGCAC-C----TTTTATCAA---TCTAGGCGAAAACTTTGCCGATTTGCTTGACGGATTGTACCGTAGGAAGTACCAT
dm3 chrX:6973351-6973593 - TTAATCTCTC-------TCACCT--AGGCTA--GTTAAAT---CAGGGCTC-------------TACCAGAATGAA------------------GG-------GA-TAGT-------------------------------------TA-------TAT-----------------------------------------------------------------------------------------------ATTAGGTT---------TTTTTTTTTTCTAATATA-------CT---------------TGT-----------------------TTTTATAGA-----CGCATGAT-----AGCTTAAA-ACA-C--T-ATTG-----AAA-------CA-----------------------------------------------------------------------------TT-ATACTAATAAATT----------------T------------TTTTAACCTTTTTTTT-TT-TTG--TTT-------------------TCGCAC-C----TTTTATCAA---TCTAGGCGAAAACTTTGCCGATTTGCTTGACGGATTGTACCGTAGGAAGTACCAT
droEre2 scaffold_4690:15883876-15884128 - TTAATCTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TACCAGAATGAA------------------GG-------GA-TA----------AGT--------------------------TA-------TAT-----------------------------------------------------------------------------------------------ATTAAGTT---------TTTTT--TTTCTAATGTA-------TT---------------CGT-----------------------TTATATAGAGATAGAGCATGAT-----ACCTTAAA-ACA-C--T-ATTG-----AAA-------CA-----------------------------------------------------------------------------AT-ATACTAATAAATT----------------TTG-TTTGT-TTTTTTTAACCTTTT-----CT-TCG--CTT-------------------TCGCAC-C----TTTTATCAA---TCTAGGCGATAACTTTGCCGATTTGCTTGACGGATTGTACCGCAGGAAGTACCAT
droYak3 X:14381292-14381539 + TTAATCTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TACCAGAATGAA------------------GG-------GA-TA----------AGT--------------------------TA-------TAT-----------------------------------------------------------------------------------------------ATTAAGTT---------TTTTT-TTTTTTAATGTA-------CT---------------TAT-----------------------TTATATAGA------GCATGAT-----ACCTTAAA-ACA-C--T-ATTG-----AAA-------CA-----------------------------------------------------------------------------TT-ATACTAATAATTT----------------TTG-TTTCT-TTTTTTTAACCTTTT-----CT-TCG--CTT-------------------TTGCAC-C----TTTTATCAA---TCTAGGCGATAACTTTGCCGATTTGCTTGACGGATTGTACCGCAGGAAGTACCAT
droEug1 scf7180000409095:314071-314328 - TTAATTTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TACCAGAGATCA------------------GG-------GT-TACT-------------------------------------TTTAACTTAGAA-----------------------------------------------------------------------------------------------AATAAGTTTTTTTTATTTT-TT--TTTTAA------------AT---------------TAT-----------------------TTATATAGA-----AGCATGAT-----GACTTGCG-GCAAT--T-TTTG-----ATA-------TA-----------------------------------------------------------------------------TT-TTACTAATTGATT----------------TTTGTTT---TCTTCTTAACCTTTC-----CTTTTG--CTC-------------------TCGCAC-C----TTGAACCAA---TCTAGGCGACAACTTTGCCGATTTGCTTGACGGACTGTACCGCAGGAAGTACCAT
droBia1 scf7180000301760:1613128-1613354 + TTAATGTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TACCAGCATTCAGCTTA--------------------------AT---------------------------------------T-------TAG-----------------------------------------------------------------------------------------------AATAAGTT---------TTTT-------TAATATA---------------------------------------------------TATATAGG-----TGCATGAT-----GACTTAAA-ACA-T--T-ATTG-----GAA-------TA-----------------------------------------------------------------------------TT-TTACTAATTAATT----------------TT--------TTCTTCTAACCTCTA-----CT-TTG--CT--------------------TTGCAC-C----TTAAATCAA---TCTAGGTGATAACTTTGCCGATTTGCTTGACGGATTGTACCGCCGGAAGTACCAT
droTak1 scf7180000415873:618559-618806 - TTAATCTCTC-------TCACCT--AGGCTA--GTTAAGT-GTCAGGGCTC-------------TACCA-----CA------------------GG-------GA-TATTTA-----TAGT--------------------------TA-------TAT-----------------------------------------------------------------------------------------------GATAAGTT---------TTTTT---TGTCAATTTA-------CT---------------TGT-----------------------TAATATAGA-----CGCATGAT-----TACTTTAA-ACA-T--T-ATTG-----ATA-------TA-----------------------------------------------------------------------------TT-TTACTAATTAATT----------------TCT-T-C---TTTTTTTAACCCTTT-----CC-TTGCTCTT-------------------TTGCAC-C----TTGAATCCA---TCTAGGCGACAACTTTGCCGATTTGCTTGACGGACTGTACCGCAGGAAGTACCAT
droEle1 scf7180000491023:843415-843647 + TTAATATCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TAACAG----CA------------------GG-------GA-AATTTA-----TAGT--------------------------T--------CAA-----------------------------------------------------------------------------------------------AATAAGTT---------TTTTT----CTC-----A-------TT---------------TTT-----------------------TTATATAAT-----TGCATGAA-----GACATTAA-GCA-C-----TTG-----ATA-------TA-----------------------------------------------------------------------------TT-TTACTAATACATT----------------TT----C---TTTTTCTAACCTT------TTT-TTA--CTC-------------------TCGCAC-C----TTGATTTAC---TCTAGGCGATAATTTTGCCGATTTGCTTGACGGACTGTACCGCAGGAAGTACCAT
droRho1 scf7180000779514:338636-338882 + TTAATCTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TAGCAGCATTCA------------------GG-------GA-TATTTA-----TAGT--------------------------TA-------CAA-----------------------------------------------------------------------------------------------AATAAGTG---------TTTTT--TTGTCAATTTA-------TT---------------TGT-----------------------TAATATAGA-----CGCATGAC-----GACTTTAA-ACA-C--T-ATTG-----ATA-------TA-----------------------------------------------------------------------------TT-TTACTAATTTATT----------------TT----C---TTTTTCTAACCTT------TTT-TTA--CTC-------------------TCGCAC-C----TTGATGTAC---TCTAGGCGATAATTTTGCCGATTTGCTTGACGGACTGTACCGCAGGAAGTACCAC
droFic1 scf7180000453927:1031842-1032085 + TTAATCTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TAGCAACGTTCA------------------GG-------GA-TATA-------------------------------------TA-------TATAATTA------C--T-------------------------------------------------------------------------------CAATAAGTT---------TTTTT----TTAAATGTA-------TC---------------TGT-----------------------TAATATAT------GGCATGAT-----AACTTTAAAA------T-GTTT-----CTA-------TA-----------------------------------------------------------------------------TT-TTACTAATAAGTT----------------TT----A---TTTTTCTAACTTT------TCT-TCG--CTC-------------------TCGCAC-C----TTAAATTAA---TCTAGGCGATAACTTTGCCGATTTGCTTGATGGACTGTACCGTAGGAAGTACCAT
droKik1 scf7180000302230:50122-50390 + TTAGT--CTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------AAGCAGCATTCA------------------GGGCCAAAGGA-TATTTA-----GAGA--------------------------TT-------TAG-----------------------------------------------------------------------------------------------AATACGTT---------TTTTT--TTTTAA------------AT---------------TAT----------ATATATAACTTTTTTTTTTAGA-----GGCATGACTAAGTAACTAAAA-AGA-TATAAATTG-----ATA-------AA------------------------------------------------------------------------------C-TTACTAATTAAAT----------------AT----A---TTTTCTTAACCGT------CTT-TGT--CTC-------------------TCCCTC-C-----TGAATTGCTCCCATAGGTGAAAACTTTGCCGAGTTGCTTGACGGACTGTACCGCAGGAAGTACCAT
droAna3 scaffold_13117:2320268-2320510 - TTAAT--CTC-------TCACCT--AGGCTAGAGTTGAGC-GACAGGGCTG-------------C---AGTT-------TAATAT----AGTTAGG-------GC-C---------------------------------------------------------------------------------------------------------------------------------------------------ACTAAGTCTTGATACT-TTTT---TTTT---------------T---------------TAT-----------------------TAGCTTAGA-----AGCATGAC--------TAAGA-ATA-C--G-AAGG----------------------------------------------------------------------------------ACTTACCGAACACAATTACTAATGAATT----------------T-G-TTT---CTTTTTTAACCTT------CCT------CTC-------------------TCGCCCCC----TTGAACCCG---TTTAGGTGACAACTTTGCCGACTTGCTCGACGGCCTGTACCGCCGGAAGTACCAC
droBip1 scf7180000396696:801245-801506 + ATGTTATCTC-------TCACCTAGAGGCTAGAGTTCAGTTGACAGGGCT---------------GCCAGTTCTT--------------AATTAGG-------GC-CAATTA------AGT-----------------------------------CAG----A------C--T-------------------------------------------------------------------------------TAGTATGTT---------TTTTT-TTTTTTGA-GAT-------TT---------------TAT-----------------------TAGCCTAGA-----AGCATGAC--------TAAGA-GTA-TGTG-AATG-----AAA------GCC-----------------------------------------------------------------------------TT-TTACTAATGAATT----------------TCT-T-------TCTCTTTTCTT------TT---------AATCCATTCTGTA-------TCGCCC-A----TTGACTTAA---TTTAGGTGACAACTTTGCCGACTTGCTCGACGGCTTGTACCGCCGGAAGTACCAC
dp5 XL_group1a:6384199-6384518 - TGAT-CTTCA-------TC-CAT--AAGGTA--GTTAAGT---CAGGGCAC-------------T---------CA------------------GG-------GA-AG------------------------------------------------------------------GTCTAGAAAAGAACACAGATCTGAAATGAGGAGCGGAAGTAACGATAGAATTGATACGAATTGAAGTTTCTAGAAATGCAAATATGTT---------T-------TTTCAATCAA-------CT---------------TTT-----------------------TCAAATAGA-----CGCATGAT-----T----TAAG-AA-C-----TCT-----CTA-------CA-----------------------------------------------------------------------------TCAATGCTAATGAATCATACTAATGCATGTTTTTT-TTTGTCTTCTTCTAACTTT------TATTTGT--CTC-------------------CCGAAT-CGTGATTGAAACAC---TATAGGTGACAACTTTGCCGATTTGCTTGACGGACTGTACCGTAGGAAGTACCAT
droPer2 scaffold_25:938408-938723 + TGAT-CTTCA-------TC-CAT--AAGGTA--GTTAAGT---CAGGGCAC-------------T---------CA------------------GG-------GA-AG------------------------------------------------------------------GTCTAGAAAAGAACACAGATCAGAAATGAGGAGCGGAAGTAACGATAGAATTGATACGAATTGAAGTTTCTAGAAATGCAAATATGTT---------T-------TTTCAATCAA-------CT---------------TTT-----------------------TCAAATAGA-----CGCATGAT-----T----TAAG-AA-C-----TCT-----CTA-------CA-----------------------------------------------------------------------------TCAATGCTAATGAATCATACTAATGCATG---TTT-TTTTT-GTCTTCTAACTTT------TATTTGT--CTC-------------------CCGAAT-CGTGATTGAATCAC---TATAGGTGACAACTTTGCCGATTTGCTTGACGGACTGTACCGTAGGAAGTACCAT
droWil2 scf2_1100000004590:2992157-2992299 + TGAAAT-TTC-------TTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATA-------TT---------------TAT-----------------------ATATAT-------------------------------------------------------------------------------------TTTTCTTTTCATTTTTCTTAAATCCCCAAAAAAACAAACAAACAA-------AC-AAACACAA----------------------------------------------------------------------------------------------------AA---AAAAGGTGACAACTTTGCCGATTTGCTTGACGGATTGTACCGCCGGAAGTATCAT
droVir3 scaffold_12928:52336-52523 - TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAATAGA-----CGCTTAAT-----AATATT-AA-TA-T-----TCT-----ATGCACAAAGTCATTTACTAATATACAATTT-TCTCTT---------------------------------------------------------------ATTT----------------TT---------GTTTTTATTCTT------TTT-TTA--TTT----TTTTTGCTAAAAAAAAAAAAA-AA---TTAATACAA-CTTTTAGGCGACAACTTTGCCGATTTGCTTGACGGACTGTACCGCCGGAAGTACCAT
droMoj3 scaffold_6359:1372635-1372935 - TAAG--------------CATTA--AGTTAA--GTTAAGT---TAGGTTTTCTTTATTTTTGTCTAGCAGCACTTA------------------AG-------TAATT----------AGT-------------------------------------------------------TTAATTTTAAATTTAAATTTGATATAAAGACAA------------------ATTCGTAGCTTAATTTTAAAAAACTCGA-------------------------------------------------------------------------ATGCAACTTTTTCAAATAGA-----CGCTTCAA-----TATTTC----AT-T-----TCCATAAAATGCAAGAA-CA-TTAACTAATATACATTTTTTCTCTTTTT---------TATTTTATTTTATTTAA------------------------------------------------------------------------------------------------------------------AAAAAA-AATC-ATTAAACTA---TTTAGGCGACAACTTTGCCGATTTGCTTGATGGACTGTACCGCAGGAAGTATCAT
droGri2 scaffold_14853:6685427-6685795 - TTAACTTTCAACACACACCGCCT--AAGTTA--TTTAAGT---AAGGGCTT------TTTGGTCTAGCAGCACTTT----AAAACTTTAAAACAAA-------GC-AATTTAAATTAAAATTACAAATAAATTAATTTTACGTCTAA---------------------------ATCTTGAAACACACACAAAT-----------------------------------T--TAGCTTAAATT---------------------------------------TAATATATTTACAATTGTACTTTTAAATCTTAATTAATTAATATGAATGCAACTTTTTCAAATAGA-----CGCTAAAG---------------CA-T-----ATT-----TTA--CACAACTATTTACTAATATACATTTTTTGTATTTTT-------------------------------------------------------------------------------------------TTTTTTATTTTT---------------TTCACCTATTTTG---------ATGCAT-T----TAAAAAAAT---TGTAGGCGACAACTTTGCCGATTTGCTCGATGGTCTGTACCGCAGGAAGTACCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTAATCTCTC-------TCACCT--AGGCTA--GTTAAAT---CAGGGCTC-------------TACCAAATCGAA------------------GG-------GA-TAGT-------------------------------------TA-------TATATTAAGTTA-------------------------------------------------------------------------------------TATTAAGTT---------TTTTT--TTTCTA------------AT---------------TGT-----------------------TCTTAGAGA-----CGCATGAT-----ACCTTAAA-ATA-C--T-ATTG-----AAA-------CA-----------------------------------------------------------------------------TT-ATACTAATAAATT----------------TTG-TTT---TTTTTTTAACCTTTT-----CT-TTA--CCT-------------------TCGCAC-C----TTTTATCAA---TCTAGGCGAAAACTTTGCCGATTTGCTTGACGGATTGTACCGTAGGAAGTACCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTACCGTAGGAAGTAC...1912.00220000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTTGCCGATTTGCTTGACGGATT...................2811.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGCCGATTTGCTTGACGGAT....................2511.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACTTTGCCGATTTGCTTGACGG......................2611.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGACGGATTGTACC..............1711.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTTGACGGATTGTACCGT............2411.00100100000000000000
...................................TAAAT---CAGGGCTC-------------TACCAAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
droSec2
TTAATCTCTC-------TCACCT--AGGCTA--GTTAAAT---CAGGGCTC-------------TACCCAAACGAA------------------GG-------GA-TAGT-------------------------------------TA-------TATATTAAGTTATATTAA-------------------------------------------------------------------------------GTTTAAGTT---------TTTT---TTTCTA------------AT---------------TGT-----------------------TCTTAGAGA-----CGCATGAT-----ACCTTAAA-ATA-C--T-ATTG-----AAA-------CA-----------------------------------------------------------------------------TT-ATACTAATAAATT----------------TTG-TTTTT-TTTTTTAAACCTTTT-----CT-TTA--CCT-------------------TCGCAC-C----TTTTATCAA---TCTAGGCGAAAACTTTGCCGATTTGCTTGACGGATTGTACCGTAGGAAGTACCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTTGCCGATTTGCTTGACGG......................2511.0010100
dm3
TTAATCTCTC-------TCACCT--AGGCTA--GTTAAAT---CAGGGCTC-------------TACCAGAATGAA------------------GG-------GA-TAGT-------------------------------------TA-------TAT-----------------------------------------------------------------------------------------------ATTAGGTT---------TTTTTTTTTTCTAATATA-------CT---------------TGT-----------------------TTTTATAGA-----CGCATGAT-----AGCTTAAA-ACA-C--T-ATTG-----AAA-------CA-----------------------------------------------------------------------------TT-ATACTAATAAATT----------------T------------TTTTAACCTTTTTTTT-TT-TTG--TTT-------------------TCGCAC-C----TTTTATCAA---TCTAGGCGAAAACTTTGCCGATTTGCTTGACGGATTGTACCGTAGGAAGTACCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGGATTGTACCGTAGGAAGTACCAT2818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000200000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGACGGATTGTACCGTAGGAAG......2616.0060000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000010000000001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTGTACCGTAGGAAGTACCAT2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGGATTGTACCGTAGGAAGTACCAT2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTTGACGGATTGTACCGTAGGAAG......2813.0030000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTGACGGATTGTACCGT............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTGACGGATTGTACCGTAGGAAG......2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGATTTGCTTGACG.......................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTTGCCGATTTGCTTGAC........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGATTGTACCGTAGGAAG......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTTGACGGATTGTAC...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTTGACGGATTGTACCGTAGGAAG......2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGACGGATTGTACCGT............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTTGACGGATTGTACC..............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTGACGGATTGTACCGTAGG.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCGATTTGCTTGACGGATTGT.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GAATGAA------------------GG-------GA-TAGT-------------------------------------TA-------TAT-----------------------------------------------------------------------------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGATTTGCTTGACGGATT...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGATTGTACCGTAGGAAGTACCAT2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGGATTGTACCGTAGGAAGTACCA.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTTGACGGATTGTACCG.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTTGACGGATTGTACCGTAGGA........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTACCGTAGGAAGTA....1911.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTTGACGGATTGTACCGT............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTGTACCGTAGGAAGTAC...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGGATTGTACCGTAGGAAGTACCA.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTTGCTTGACGGATTGTACCGTAG..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATTTGCTTGACGGATTGTACCGT............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTTGACGGATTGTACC..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTTGCTTGACGGATTGTAC...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTGTACCGTAGGAAGTACC..2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGCCGATTTGCTTGACGGA.....................2411.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACTTTGCCGATTTGCTTGACG.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGGATTGTACCGTAGGAA.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGACGGATTGTACCGTAGGAAGT.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGATTTGCTTGACGGATTGTAT...............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATTGTACCGTAGGAAGTACC..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTTTGCCGATTTGCT............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGCCGATTTGCTTGACGG......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTTGCTTGACGGATTGTACCA.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGATTTGCTTGACGGATTGTACCG.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................ACCAGAATGAA------------------GG-------GA-TAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGACGGATTGTACCGTAGGAAG......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................TAAAT---CAGGGCTC-------------TACCAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTTGCCGATTTGCTTGACGGA.....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAATAAATT----------------T------------TTTTT.........................................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGACGGATTGTAATC.............19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTAATCTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TACCAGAATGAA------------------GG-------GA-TA----------AGT--------------------------TA-------TAT-----------------------------------------------------------------------------------------------ATTAAGTT---------TTTTT--TTTCTAATGTA-------TT---------------CGT-----------------------TTATATAGAGATAGAGCATGAT-----ACCTTAAA-ACA-C--T-ATTG-----AAA-------CA-----------------------------------------------------------------------------AT-ATACTAATAAATT----------------TTG-TTTGT-TTTTTTTAACCTTTT-----CT-TCG--CTT-------------------TCGCAC-C----TTTTATCAA---TCTAGGCGATAACTTTGCCGATTTGCTTGACGGATTGTACCGCAGGAAGTACCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTTTGCCGATTTGCT............................1912.0020000020
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACTTTGCCGATTTGCTTGACGGAT....................2611.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTTGACGGATTGTACC..............2011.0010000100
droYak3
TTAATCTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TACCAGAATGAA------------------GG-------GA-TA----------AGT--------------------------TA-------TAT-----------------------------------------------------------------------------------------------ATTAAGTT---------TTTTT-TTTTTTAATGTA-------CT---------------TAT-----------------------TTATATAGA------GCATGAT-----ACCTTAAA-ACA-C--T-ATTG-----AAA-------CA-----------------------------------------------------------------------------TT-ATACTAATAATTT----------------TTG-TTTCT-TTTTTTTAACCTTTT-----CT-TCG--CTT-------------------TTGCAC-C----TTTTATCAA---TCTAGGCGATAACTTTGCCGATTTGCTTGACGGATTGTACCGCAGGAAGTACCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTTGACGGATTGTACCGCA...........2511.00101000000000
................................................CTC-------------TACCAGAATGAA------------------GG-------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGCCGATTTGCTTGACGGA.....................2311.00100001000000
droEug1
TTAATTTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TACCAGAGATCA------------------GG-------GT-TACT-------------------------------------TTTAACTTAGAA-----------------------------------------------------------------------------------------------AATAAGTTTTTTTTATTTT-TT--TTTTAA------------AT---------------TAT-----------------------TTATATAGA-----AGCATGAT-----GACTTGCG-GCAAT--T-TTTG-----ATA-------TA-----------------------------------------------------------------------------TT-TTACTAATTGATT----------------TTTGTTT---TCTTCTTAACCTTTC-----CTTTTG--CTC-------------------TCGCAC-C----TTGAACCAA---TCTAGGCGACAACTTTGCCGATTTGCTTGACGGACTGTACCGCAGGAAGTACCATSizeHit CountTotal NormTotal
No Reads
droBia1
TTAATGTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TACCAGCATTCAGCTTA--------------------------AT---------------------------------------T-------TAG-----------------------------------------------------------------------------------------------AATAAGTT---------TTTT-------TAATATA---------------------------------------------------TATATAGG-----TGCATGAT-----GACTTAAA-ACA-T--T-ATTG-----GAA-------TA-----------------------------------------------------------------------------TT-TTACTAATTAATT----------------TT--------TTCTTCTAACCTCTA-----CT-TTG--CT--------------------TTGCAC-C----TTAAATCAA---TCTAGGTGATAACTTTGCCGATTTGCTTGACGGATTGTACCGCCGGAAGTACCATSizeHit CountTotal NormTotal
No Reads
droTak1
TTAATCTCTC-------TCACCT--AGGCTA--GTTAAGT-GTCAGGGCTC-------------TACCA-----CA------------------GG-------GA-TATTTA-----TAGT--------------------------TA-------TAT-----------------------------------------------------------------------------------------------GATAAGTT---------TTTTT---TGTCAATTTA-------CT---------------TGT-----------------------TAATATAGA-----CGCATGAT-----TACTTTAA-ACA-T--T-ATTG-----ATA-------TA-----------------------------------------------------------------------------TT-TTACTAATTAATT----------------TCT-T-C---TTTTTTTAACCCTTT-----CC-TTGCTCTT-------------------TTGCAC-C----TTGAATCCA---TCTAGGCGACAACTTTGCCGATTTGCTTGACGGACTGTACCGCAGGAAGTACCATSizeHit CountTotal NormTotal
No Reads
droEle1
TTAATATCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TAACAG----CA------------------GG-------GA-AATTTA-----TAGT--------------------------T--------CAA-----------------------------------------------------------------------------------------------AATAAGTT---------TTTTT----CTC-----A-------TT---------------TTT-----------------------TTATATAAT-----TGCATGAA-----GACATTAA-GCA-C-----TTG-----ATA-------TA-----------------------------------------------------------------------------TT-TTACTAATACATT----------------TT----C---TTTTTCTAACCTT------TTT-TTA--CTC-------------------TCGCAC-C----TTGATTTAC---TCTAGGCGATAATTTTGCCGATTTGCTTGACGGACTGTACCGCAGGAAGTACCATSizeHit CountTotal NormTotal
No Reads
droRho1
TTAATCTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TAGCAGCATTCA------------------GG-------GA-TATTTA-----TAGT--------------------------TA-------CAA-----------------------------------------------------------------------------------------------AATAAGTG---------TTTTT--TTGTCAATTTA-------TT---------------TGT-----------------------TAATATAGA-----CGCATGAC-----GACTTTAA-ACA-C--T-ATTG-----ATA-------TA-----------------------------------------------------------------------------TT-TTACTAATTTATT----------------TT----C---TTTTTCTAACCTT------TTT-TTA--CTC-------------------TCGCAC-C----TTGATGTAC---TCTAGGCGATAATTTTGCCGATTTGCTTGACGGACTGTACCGCAGGAAGTACCACSizeHit CountTotal NormTotal
No Reads
droFic1
TTAATCTCTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------TAGCAACGTTCA------------------GG-------GA-TATA-------------------------------------TA-------TATAATTA------C--T-------------------------------------------------------------------------------CAATAAGTT---------TTTTT----TTAAATGTA-------TC---------------TGT-----------------------TAATATAT------GGCATGAT-----AACTTTAAAA------T-GTTT-----CTA-------TA-----------------------------------------------------------------------------TT-TTACTAATAAGTT----------------TT----A---TTTTTCTAACTTT------TCT-TCG--CTC-------------------TCGCAC-C----TTAAATTAA---TCTAGGCGATAACTTTGCCGATTTGCTTGATGGACTGTACCGTAGGAAGTACCATSizeHit CountTotal NormTotal
No Reads
droKik1
TTAGT--CTC-------TCACCT--AGGCTA--GTTAAGT---CAGGGCTC-------------AAGCAGCATTCA------------------GGGCCAAAGGA-TATTTA-----GAGA--------------------------TT-------TAG-----------------------------------------------------------------------------------------------AATACGTT---------TTTTT--TTTTAA------------AT---------------TAT----------ATATATAACTTTTTTTTTTAGA-----GGCATGACTAAGTAACTAAAA-AGA-TATAAATTG-----ATA-------AA------------------------------------------------------------------------------C-TTACTAATTAAAT----------------AT----A---TTTTCTTAACCGT------CTT-TGT--CTC-------------------TCCCTC-C-----TGAATTGCTCCCATAGGTGAAAACTTTGCCGAGTTGCTTGACGGACTGTACCGCAGGAAGTACCATSizeHit CountTotal NormTotal
No Reads
droAna3
TTAAT--CTC-------TCACCT--AGGCTAGAGTTGAGC-GACAGGGCTG-------------C---AGTT-------TAATAT----AGTTAGG-------GC-C---------------------------------------------------------------------------------------------------------------------------------------------------ACTAAGTCTTGATACT-TTTT---TTTT---------------T---------------TAT-----------------------TAGCTTAGA-----AGCATGAC--------TAAGA-ATA-C--G-AAGG----------------------------------------------------------------------------------ACTTACCGAACACAATTACTAATGAATT----------------T-G-TTT---CTTTTTTAACCTT------CCT------CTC-------------------TCGCCCCC----TTGAACCCG---TTTAGGTGACAACTTTGCCGACTTGCTCGACGGCCTGTACCGCCGGAAGTACCACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGCCGACTTGCTCGACG.......................2112.002000002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGACTTGCTCGACGGCCT...................2211.001100000
..........................................................................................................................................................................................................................................................................................................................................................GA-----AGCATGAC--------TAAGA-ATA-C--G-AAGG----------------------------------------------------------------------------------.......................................................................................................................................................................................2411.001000001
...................................TGAGC-GACAGGGCTG-------------C---AGTT-------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACTTTGCCGACTTGCTCGACGGC.....................2711.001100000
droBip1
ATGTTATCTC-------TCACCTAGAGGCTAGAGTTCAGTTGACAGGGCT---------------GCCAGTTCTT--------------AATTAGG-------GC-CAATTA------AGT-----------------------------------CAG----A------C--T-------------------------------------------------------------------------------TAGTATGTT---------TTTTT-TTTTTTGA-GAT-------TT---------------TAT-----------------------TAGCCTAGA-----AGCATGAC--------TAAGA-GTA-TGTG-AATG-----AAA------GCC-----------------------------------------------------------------------------TT-TTACTAATGAATT----------------TCT-T-------TCTCTTTTCTT------TT---------AATCCATTCTGTA-------TCGCCC-A----TTGACTTAA---TTTAGGTGACAACTTTGCCGACTTGCTCGACGGCTTGTACCGCCGGAAGTACCACSizeHit CountTotal NormTotal
No Reads
dp5
TGAT-CTTCA-------TC-CAT--AAGGTA--GTTAAGT---CAGGGCAC-------------T---------CA------------------GG-------GA-AG------------------------------------------------------------------GTCTAGAAAAGAACACAGATCTGAAATGAGGAGCGGAAGTAACGATAGAATTGATACGAATTGAAGTTTCTAGAAATGCAAATATGTT---------T-------TTTCAATCAA-------CT---------------TTT-----------------------TCAAATAGA-----CGCATGAT-----T----TAAG-AA-C-----TCT-----CTA-------CA-----------------------------------------------------------------------------TCAATGCTAATGAATCATACTAATGCATGTTTTTT-TTTGTCTTCTTCTAACTTT------TATTTGT--CTC-------------------CCGAAT-CGTGATTGAAACAC---TATAGGTGACAACTTTGCCGATTTGCTTGACGGACTGTACCGTAGGAAGTACCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTTGACGGACTGTACCGTAGGA........2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGATTTGCTTGACGGACT...................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCCGATTTGCTTGACGGACTGTAC...............2811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGACTGTACCGTAGG.........1811.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTTGACGGACTGTACC..............2211.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTTTGCCGATTTGCTT...........................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACTTTGCCGATTTGCTTGAC........................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTGACGGACTGTACC..............1911.0010000000001
droPer2
TGAT-CTTCA-------TC-CAT--AAGGTA--GTTAAGT---CAGGGCAC-------------T---------CA------------------GG-------GA-AG------------------------------------------------------------------GTCTAGAAAAGAACACAGATCAGAAATGAGGAGCGGAAGTAACGATAGAATTGATACGAATTGAAGTTTCTAGAAATGCAAATATGTT---------T-------TTTCAATCAA-------CT---------------TTT-----------------------TCAAATAGA-----CGCATGAT-----T----TAAG-AA-C-----TCT-----CTA-------CA-----------------------------------------------------------------------------TCAATGCTAATGAATCATACTAATGCATG---TTT-TTTTT-GTCTTCTAACTTT------TATTTGT--CTC-------------------CCGAAT-CGTGATTGAATCAC---TATAGGTGACAACTTTGCCGATTTGCTTGACGGACTGTACCGTAGGAAGTACCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTTGACGGACTGTACCGTAG..........2612.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAACTTTGCCGATTTGCTTGACGGACT...................2911.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTTGACGGACTGTACC..............2111.001100000
droWil2
TGAAAT-TTC-------TTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATA-------TT---------------TAT-----------------------ATATAT-------------------------------------------------------------------------------------TTTTCTTTTCATTTTTCTTAAATCCCCAAAAAAACAAACAAACAA-------AC-AAACACAA----------------------------------------------------------------------------------------------------AA---AAAAGGTGACAACTTTGCCGATTTGCTTGACGGATTGTACCGCCGGAAGTATCATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTTGACGGATTGTACCGCC...........2511.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA-------AC-AAACACAA----------------------------------------------------------------------------------------------------AA---AAA....................................................1960.17100010
droVir3
TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAATAGA-----CGCTTAAT-----AATATT-AA-TA-T-----TCT-----ATGCACAAAGTCATTTACTAATATACAATTT-TCTCTT---------------------------------------------------------------ATTT----------------TT---------GTTTTTATTCTT------TTT-TTA--TTT----TTTTTGCTAAAAAAAAAAAAA-AA---TTAATACAA-CTTTTAGGCGACAACTTTGCCGATTTGCTTGACGGACTGTACCGCCGGAAGTACCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGATTTGCTTGACGGACTGT.................2311.001000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTGACGGACTGTACCGCCGGAAG......2611.001000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAA-CTTTTAGGCGACAACTTTGCCGAT.................................2911.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGCCGGAAGTACCAT1911.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTACCGCCGGAAGTACC..1911.001000000000000000000000000100000000000000000000000000000000000000
droMoj3
TAAG--------------CATTA--AGTTAA--GTTAAGT---TAGGTTTTCTTTATTTTTGTCTAGCAGCACTTA------------------AG-------TAATT----------AGT-------------------------------------------------------TTAATTTTAAATTTAAATTTGATATAAAGACAA------------------ATTCGTAGCTTAATTTTAAAAAACTCGA-------------------------------------------------------------------------ATGCAACTTTTTCAAATAGA-----CGCTTCAA-----TATTTC----AT-T-----TCCATAAAATGCAAGAA-CA-TTAACTAATATACATTTTTTCTCTTTTT---------TATTTTATTTTATTTAA------------------------------------------------------------------------------------------------------------------AAAAAA-AATC-ATTAAACTA---TTTAGGCGACAACTTTGCCGATTTGCTTGATGGACTGTACCGCAGGAAGTATCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTGCCGATTTGCTTGATGGA.....................2411.001100000
droGri2
TTAACTTTCAACACACACCGCCT--AAGTTA--TTTAAGT---AAGGGCTT------TTTGGTCTAGCAGCACTTT----AAAACTTTAAAACAAA-------GC-AATTTAAATTAAAATTACAAATAAATTAATTTTACGTCTAA---------------------------ATCTTGAAACACACACAAAT-----------------------------------T--TAGCTTAAATT---------------------------------------TAATATATTTACAATTGTACTTTTAAATCTTAATTAATTAATATGAATGCAACTTTTTCAAATAGA-----CGCTAAAG---------------CA-T-----ATT-----TTA--CACAACTATTTACTAATATACATTTTTTGTATTTTT-------------------------------------------------------------------------------------------TTTTTTATTTTT---------------TTCACCTATTTTG---------ATGCAT-T----TAAAAAAAT---TGTAGGCGACAACTTTGCCGATTTGCTCGATGGTCTGTACCGCAGGAAGTACCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTGCCGATTTGCTCGATG.......................2111.00101
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATTTGCTCGATGGTCTG..................2011.00110
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGATGGTCTGTACCGCAGGA........2211.00101

Generated: 05/19/2015 at 04:03 AM